Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 2.6e-156 555.4 300 100.0
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 4.3e-151 538.1 300 96.3
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 9.5e-151 537.0 300 96.3
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 1.2e-150 536.6 298 96.3
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 3.4e-148 528.5 298 94.0
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 5.1e-144 514.6 300 93.3
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 7.3e-143 510.8 298 93.0
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 1.2e-142 510.0 302 89.4
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 8.9e-141 503.8 299 86.6
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 4.4e-140 501.5 300 84.7
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 3.2e-138 495.4 299 86.6
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 1.0e-136 490.3 301 85.7
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 3.0e-136 488.8 300 81.7
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 3.6e-134 481.9 301 86.4
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 2.4e-133 479.2 299 86.6
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 6.9e-133 477.6 301 84.4
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 1.5e-132 476.5 306 80.4
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 1.5e-132 476.5 300 82.3
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 2.0e-132 476.1 304 81.6
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 2.6e-132 475.7 304 80.3
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 2.6e-132 475.7 301 80.7
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 5.8e-132 474.6 301 80.4
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 5.8e-132 474.6 305 84.6
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 9.9e-132 473.8 302 80.5
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 1.3e-131 473.4 304 80.9
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 1.7e-131 473.0 301 86.0
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 1.7e-131 473.0 306 82.7
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 1.7e-131 473.0 304 82.9
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.2e-131 472.6 304 80.6
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.2e-131 472.6 304 80.6
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 2.9e-131 472.2 306 81.0
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 2.9e-131 472.2 300 84.0
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 3.8e-131 471.9 304 80.6
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 4.9e-131 471.5 304 81.6
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 1.1e-130 470.3 300 81.0
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 1.1e-130 470.3 302 80.8
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 2.4e-130 469.2 302 83.4
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 2.4e-130 469.2 302 80.1
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 4.2e-130 468.4 303 80.9
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 9.3e-130 467.2 296 83.1
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 9.3e-130 467.2 304 79.6
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 1.2e-129 466.8 304 83.9
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.6e-129 466.5 304 82.9
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 1.6e-129 466.5 301 80.4
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 1.6e-129 466.5 301 81.4
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 2.7e-129 465.7 302 79.8
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 3.5e-129 465.3 304 81.9
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.5e-129 465.3 305 83.0
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 4.6e-129 464.9 304 79.6
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 4.6e-129 464.9 301 80.1
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 6.0e-129 464.5 304 79.3
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 7.9e-129 464.2 300 82.7
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 1.0e-128 463.8 305 80.7
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 1.3e-128 463.4 303 79.9
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.3e-128 463.4 302 81.5
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.3e-128 463.4 302 81.5
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 3.9e-128 461.8 300 78.3
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 1.1e-127 460.3 304 78.3
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.5e-127 459.9 302 81.5
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 1.9e-127 459.5 300 81.3
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 3.3e-127 458.8 303 82.8
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 4.3e-127 458.4 300 80.7
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 9.6e-127 457.2 300 84.0
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 1.3e-126 456.8 301 81.1
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 3.6e-126 455.3 300 81.3
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 8.1e-126 454.1 300 78.7
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 1.8e-125 453.0 304 77.3
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 3.1e-125 452.2 302 80.1
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 3.1e-125 452.2 283 83.7
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 4.0e-125 451.8 302 78.8
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 5.3e-125 451.4 300 77.0
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 5.3e-125 451.4 305 78.7
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 6.9e-125 451.1 300 79.7
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 6.9e-125 451.1 303 77.2
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.5e-124 449.9 300 78.3
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 2.6e-124 449.1 303 76.6
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 9.9e-124 447.2 303 76.9
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 9.9e-124 447.2 303 76.9
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.3e-123 446.8 302 76.8
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.7e-123 446.4 304 75.7
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 3.8e-123 445.3 318 74.5
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 3.8e-123 445.3 318 74.5
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 3.8e-123 445.3 318 74.5
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 6.4e-123 444.5 305 78.0
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 8.4e-123 444.1 294 79.6
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.1e-122 443.7 304 75.0
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.1e-122 443.7 303 76.6
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 1.9e-122 443.0 300 77.3
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 2.4e-122 442.6 300 77.7
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 5.5e-122 441.4 300 76.7
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 7.1e-122 441.0 301 77.4
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 9.3e-122 440.7 300 79.3
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 1.2e-121 440.3 302 78.8
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 2.7e-121 439.1 301 79.1
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 6.0e-121 438.0 304 74.0
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 1.9e-119 433.0 300 74.0
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 2.5e-119 432.6 302 73.5
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 4.3e-119 431.8 301 77.7
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 9.6e-119 430.6 300 74.7
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 1.3e-118 430.3 300 76.7
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 1.3e-118 430.3 300 76.7
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 1.3e-118 430.3 300 76.7
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 1.6e-118 429.9 303 75.2
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 3.7e-118 428.7 303 75.6
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 1.8e-117 426.4 303 75.2
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.8e-117 426.4 302 76.8
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.5e-116 423.3 297 76.1
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.6e-116 422.5 302 76.8
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 7.4e-111 404.4 312 70.8
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 4.8e-110 401.7 315 69.2
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 3.4e-108 395.6 300 68.3
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 1.2e-105 387.1 303 72.6
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.1e-105 386.3 280 75.0
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 1.0e-104 384.0 299 68.2
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.8e-101 373.2 300 64.7
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 7.2e-98 361.3 288 68.4
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 3.7e-94 349.0 327 58.7
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 9.1e-93 344.4 195 86.2
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 9.1e-93 344.4 302 59.6
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.5e-87 327.0 250 68.8
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 2.1e-81 306.6 301 55.1
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 4.7e-81 305.4 296 57.1
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 8.8e-80 301.2 250 65.6
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 8.8e-80 301.2 300 57.7
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 1.1e-77 294.3 300 59.3
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 7.0e-69 265.0 134 97.0
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 9.1e-69 264.6 299 51.5
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 5.9e-68 261.9 196 75.5
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 8.8e-64 248.1 274 58.0
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 2.5e-58 229.9 189 71.4
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 4.0e-56 222.6 204 64.2
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 3.9e-51 206.1 309 44.0
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 8.6e-51 204.9 292 47.3
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.3e-50 203.0 167 72.5
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.1e-49 200.3 192 61.5
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 1.0e-48 198.0 228 57.0
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 7.5e-47 191.8 191 61.8
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 9.5e-42 174.9 199 49.7
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 4.0e-40 169.5 110 79.1
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 9.2e-37 158.3 104 73.1
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 3.5e-36 156.4 180 50.0
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 5.8e-31 139.0 219 45.2
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 2.9e-30 136.7 102 66.7
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 4.0e-24 116.3 300 36.7
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.2e-23 114.8 300 36.7
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 3.8e-22 109.8 77 71.4
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 1.4e-21 107.8 86 66.3
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 3.2e-21 106.7 150 48.0
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 2.7e-20 103.6 61 77.0
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 1.5e-18 97.8 59 76.3
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 2.8e-17 93.6 113 54.9
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 3.1e-16 90.1 114 55.3
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 1.3e-14 84.7 94 60.6
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 6.4e-14 82.4 95 55.8
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 6.0e-12 75.9 52 80.8
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 1.9e-10 70.9 128 46.1
Peaxi162Scf00134g00138 Petunia axillaris HOM05D004662 ORTHO05D306304 3.1e-08 63.5 41 85.4
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 1.3e-06 58.2 78 46.2


User provided reference genes

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