Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 7.8e-33 143.3 76 100.0
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.1e-13 79.7 77 66.2
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 1.4e-13 79.3 78 62.8
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.8e-13 79.0 52 84.6
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 3.1e-13 78.2 55 80.0
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 3.1e-13 78.2 69 69.6
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 3.1e-13 78.2 55 76.4
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 5.2e-13 77.4 52 82.7
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 6.8e-13 77.0 52 80.8
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 6.8e-13 77.0 51 82.4
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 6.8e-13 77.0 52 82.7
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 6.8e-13 77.0 52 82.7
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 8.9e-13 76.6 81 59.3
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 8.9e-13 76.6 50 84.0
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 1.2e-12 76.3 81 63.0
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 1.2e-12 76.3 52 78.8
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 1.5e-12 75.9 54 77.8
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.5e-12 75.9 55 76.4
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.0e-12 75.5 62 71.0
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 2.0e-12 75.5 62 71.0
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 2.0e-12 75.5 62 71.0
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 2.0e-12 75.5 62 71.0
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.0e-12 75.5 55 76.4
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 2.6e-12 75.1 55 81.8
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.6e-12 75.1 62 71.0
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.6e-12 75.1 62 71.0
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 2.6e-12 75.1 71 64.8
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 2.6e-12 75.1 55 74.5
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 3.4e-12 74.7 52 80.8
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 3.4e-12 74.7 54 75.9
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 3.4e-12 74.7 50 82.0
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 4.4e-12 74.3 75 60.0
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 4.4e-12 74.3 52 78.8
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 5.8e-12 73.9 55 72.7
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 7.6e-12 73.6 52 80.8
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 7.6e-12 73.6 57 75.4
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 7.6e-12 73.6 57 77.2
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 9.9e-12 73.2 52 76.9
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 9.9e-12 73.2 51 80.4
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 9.9e-12 73.2 69 65.2
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 9.9e-12 73.2 55 74.5
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 9.9e-12 73.2 52 76.9
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 1.3e-11 72.8 79 55.7
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 1.3e-11 72.8 52 73.1
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.3e-11 72.8 55 72.7
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.7e-11 72.4 52 78.8
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.7e-11 72.4 52 78.8
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.7e-11 72.4 52 78.8
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 1.7e-11 72.4 52 78.8
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 2.2e-11 72.0 84 56.0
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 2.2e-11 72.0 87 52.9
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 2.2e-11 72.0 73 57.5
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.9e-11 71.6 52 76.9
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 2.9e-11 71.6 52 75.0
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 2.9e-11 71.6 51 76.5
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.9e-11 71.6 55 72.7
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 3.8e-11 71.2 51 76.5
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 4.9e-11 70.9 52 76.9
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 4.9e-11 70.9 52 76.9
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 4.9e-11 70.9 68 63.2
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 6.4e-11 70.5 62 66.1
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 6.4e-11 70.5 52 75.0
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 6.4e-11 70.5 69 63.8
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 6.4e-11 70.5 69 63.8
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 6.4e-11 70.5 69 63.8
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 6.4e-11 70.5 51 74.5
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 8.4e-11 70.1 52 73.1
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 8.4e-11 70.1 52 73.1
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 8.4e-11 70.1 52 73.1
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 8.4e-11 70.1 82 53.7
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 8.4e-11 70.1 52 75.0
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 8.4e-11 70.1 52 71.2
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 1.1e-10 69.7 54 74.1
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 1.1e-10 69.7 83 55.4
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 1.1e-10 69.7 84 50.0
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 1.4e-10 69.3 62 66.1
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 1.4e-10 69.3 55 67.3
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 1.4e-10 69.3 79 55.7
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 1.4e-10 69.3 84 52.4
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 1.9e-10 68.9 66 63.6
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 1.9e-10 68.9 62 64.5
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 1.9e-10 68.9 80 51.2
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.9e-10 68.9 54 68.5
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 1.9e-10 68.9 62 67.7
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 2.4e-10 68.6 51 76.5
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 2.4e-10 68.6 55 69.1
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 3.2e-10 68.2 64 65.6
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 3.2e-10 68.2 78 53.8
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 3.2e-10 68.2 78 53.8
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 3.2e-10 68.2 52 73.1
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 4.1e-10 67.8 50 76.0
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 4.1e-10 67.8 52 71.2
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 4.1e-10 67.8 52 71.2
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 4.1e-10 67.8 52 71.2
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 4.1e-10 67.8 52 71.2
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 4.1e-10 67.8 52 71.2
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 4.1e-10 67.8 52 71.2
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 4.1e-10 67.8 78 57.7
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 4.1e-10 67.8 52 71.2
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 5.4e-10 67.4 52 71.2
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 5.4e-10 67.4 52 73.1
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 5.4e-10 67.4 52 73.1
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 7.1e-10 67.0 55 67.3
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 9.2e-10 66.6 74 56.8
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 9.2e-10 66.6 52 69.2
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 9.2e-10 66.6 62 61.3
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 1.2e-09 66.2 54 64.8
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 2.1e-09 65.5 53 66.0
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.1e-09 65.5 49 73.5
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.1e-09 65.5 59 66.1
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 2.7e-09 65.1 52 75.0
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 2.7e-09 65.1 74 52.7
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 3.5e-09 64.7 51 70.6
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 3.5e-09 64.7 51 70.6
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 4.6e-09 64.3 71 53.5
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 4.6e-09 64.3 52 65.4
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 4.6e-09 64.3 54 66.7
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 6.0e-09 63.9 52 67.3
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 7.8e-09 63.5 51 68.6
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 7.8e-09 63.5 65 58.5
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 3.0e-08 61.6 65 58.5
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 3.0e-08 61.6 65 58.5
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 3.0e-08 61.6 65 58.5
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 3.0e-08 61.6 52 61.5
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 3.9e-08 61.2 64 57.8
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 8.7e-08 60.1 52 59.6
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 1.1e-07 59.7 52 63.5
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 1.5e-07 59.3 51 60.8
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.3e-07 58.2 52 59.6
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.3e-07 58.2 52 59.6
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 4.3e-07 57.8 76 46.1
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 5.6e-07 57.4 60 53.3
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 7.3e-07 57.0 75 52.0


User provided reference genes

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