Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 8.4e-131 470.7 302 100.0
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 8.2e-118 427.6 303 85.8
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 6.7e-112 407.9 285 89.1
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 2.8e-110 402.5 214 99.1
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 1.3e-107 393.7 302 79.5
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 1.1e-103 380.6 304 82.2
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 3.3e-103 379.0 304 84.9
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 9.7e-103 377.5 291 78.7
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.3e-102 377.1 292 80.1
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 1.3e-102 377.1 304 78.6
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 7.0e-101 371.3 286 80.4
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 5.9e-100 368.2 301 77.1
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.0e-99 367.5 301 77.4
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 2.2e-99 366.3 308 76.9
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 8.5e-99 364.4 223 86.5
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 8.5e-99 364.4 223 86.5
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.9e-98 363.2 308 76.6
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 3.2e-98 362.5 219 85.8
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 5.5e-98 361.7 221 85.1
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 7.2e-98 361.3 287 76.3
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 1.2e-97 360.5 223 84.3
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 1.2e-97 360.5 224 84.8
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 1.6e-97 360.1 290 80.0
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 2.7e-97 359.4 219 87.2
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 3.6e-97 359.0 269 84.0
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 3.6e-97 359.0 269 84.0
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 3.6e-97 359.0 288 81.6
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 3.6e-97 359.0 224 85.7
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 3.6e-97 359.0 224 85.7
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 4.7e-97 358.6 295 77.3
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 1.8e-96 356.7 317 77.3
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 3.0e-96 355.9 288 72.9
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 3.0e-96 355.9 218 86.2
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 3.0e-96 355.9 287 77.0
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 5.2e-96 355.1 221 82.8
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 6.8e-96 354.8 196 87.8
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 1.5e-95 353.6 214 86.4
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 3.4e-95 352.4 195 88.2
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 4.4e-95 352.1 221 85.1
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 9.8e-95 350.9 271 79.3
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 1.3e-94 350.5 287 76.7
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.7e-94 350.1 304 77.0
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 1.7e-94 350.1 214 83.2
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 2.8e-94 349.4 189 90.5
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 3.7e-94 349.0 198 85.9
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 1.4e-93 347.1 289 72.0
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 2.4e-93 346.3 285 81.1
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 2.4e-93 346.3 193 87.0
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 3.1e-93 345.9 197 87.8
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 3.1e-93 345.9 198 85.9
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 3.1e-93 345.9 195 85.6
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 3.1e-93 345.9 305 79.7
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 5.4e-93 345.1 189 89.4
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 9.1e-93 344.4 191 88.0
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 2.0e-92 343.2 354 65.8
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 2.7e-92 342.8 302 74.5
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 2.7e-92 342.8 302 74.5
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 2.7e-92 342.8 285 79.6
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 3.5e-92 342.4 285 78.9
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 4.5e-92 342.0 197 86.8
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 4.5e-92 342.0 301 73.4
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 1.3e-91 340.5 187 88.2
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 2.2e-91 339.7 302 74.2
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 2.9e-91 339.3 301 72.1
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 5.0e-91 338.6 302 72.5
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 6.5e-91 338.2 196 84.7
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 2.5e-90 336.3 289 76.8
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 3.2e-90 335.9 286 75.2
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 7.2e-90 334.7 294 78.2
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 9.4e-90 334.3 176 92.0
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 9.4e-90 334.3 199 84.4
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 9.4e-90 334.3 199 84.4
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 2.1e-89 333.2 177 91.0
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 2.1e-89 333.2 184 87.0
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 3.6e-89 332.4 286 75.5
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 3.6e-89 332.4 176 89.8
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 3.6e-89 332.4 176 89.8
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 8.0e-89 331.3 176 89.2
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 1.8e-88 330.1 176 90.3
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 6.8e-88 328.2 286 72.4
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 1.2e-87 327.4 185 85.4
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 1.5e-87 327.0 178 88.2
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 2.0e-87 326.6 187 84.0
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 1.7e-86 323.6 185 84.3
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 4.9e-86 322.0 185 82.7
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 4.9e-86 322.0 185 82.7
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 6.3e-86 321.6 185 82.7
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 6.3e-86 321.6 185 82.7
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 6.3e-86 321.6 305 75.1
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 8.3e-86 321.2 185 83.8
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 8.3e-86 321.2 185 83.8
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 4.1e-85 318.9 286 72.0
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 5.4e-85 318.5 185 82.2
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 7.0e-85 318.2 188 84.0
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 7.7e-84 314.7 380 57.6
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 3.8e-83 312.4 197 77.2
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 5.0e-83 312.0 192 80.2
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 8.6e-83 311.2 176 86.4
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 4.7e-81 305.4 192 79.2
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 5.7e-79 298.5 196 75.0
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 9.8e-79 297.7 197 75.1
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 1.3e-78 297.4 180 77.2
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 6.4e-78 295.0 198 74.7
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 2.4e-77 293.1 194 75.3
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 7.0e-77 291.6 164 87.2
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 4.3e-74 282.3 196 74.0
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 4.7e-73 278.9 169 79.3
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 2.3e-72 276.6 211 75.4
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 2.4e-69 266.5 150 87.3
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 1.6e-65 253.8 195 64.1
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.8e-64 250.4 218 84.4
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 3.1e-64 249.6 162 77.2
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 3.4e-63 246.1 187 64.2
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 4.4e-63 245.7 148 82.4
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 5.8e-63 245.4 137 86.1
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 3.7e-62 242.7 224 78.6
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 4.1e-61 239.2 225 79.1
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 7.8e-60 235.0 139 82.0
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 6.6e-59 231.9 184 66.3
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 1.1e-56 224.6 196 62.2
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 1.1e-56 224.6 145 75.2
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 1.2e-55 221.1 176 60.2
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 2.1e-52 210.3 134 77.6
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 1.0e-51 208.0 108 89.8
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 1.3e-51 207.6 240 64.2
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 3.9e-51 206.1 203 58.6
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 8.1e-49 198.4 156 72.4
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 1.8e-48 197.2 102 91.2
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 3.3e-42 176.4 109 80.7
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 1.4e-40 171.0 91 87.9
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.3e-38 164.5 130 66.2
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 1.1e-37 161.4 88 87.5
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 8.7e-35 151.8 184 65.8
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 1.4e-32 144.4 83 81.9
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 2.6e-31 140.2 71 93.0
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 2.6e-31 140.2 71 93.0
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 3.0e-27 126.7 62 96.8
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 3.0e-27 126.7 62 96.8
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 4.3e-26 122.9 63 93.7
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 5.6e-26 122.5 64 90.6
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 4.0e-24 116.3 60 90.0
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 2.0e-23 114.0 91 69.2
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 5.5e-21 105.9 58 86.2
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 1.0e-19 101.7 51 92.2
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 3.9e-19 99.8 51 90.2
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 5.1e-19 99.4 48 95.8
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 2.5e-18 97.1 128 51.6
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 4.1e-16 89.7 167 54.5
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 7.4e-10 68.9 50 74.0
Haze_05345 Corylus avellana HOM05D004689 ORTHO05D023802 3.1e-08 63.5 130 64.6
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 4.5e-07 59.7 132 55.3
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 2.9e-06 57.0 152 58.6


User provided reference genes

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