Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1019.3 Capsicum annuum HOM05D003738 ORTHO05D005143 6.8e-90 334.0 166 100.0
CAN.G625.63 Capsicum annuum HOM05D003738 ORTHO05D005143 1.0e-61 240.4 183 69.9
Sopen02g035750 Solanum pennellii HOM05D003738 ORTHO05D005143 8.6e-61 237.3 183 68.9
Solyc02g091100.3 Solanum lycopersicum HOM05D003738 ORTHO05D005143 1.5e-60 236.5 183 68.3
PGSC0003DMG400030633 Solanum tuberosum HOM05D003738 ORTHO05D005143 1.5e-60 236.5 183 68.3
Nitab4.5_0002456g0020 Nicotiana tabacum HOM05D003738 ORTHO05D005143 2.8e-59 232.3 183 67.8
Nitab4.5_0007290g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 1.4e-58 229.9 183 67.2
Nitab4.5_0011323g0010 Nicotiana tabacum HOM05D003738 ORTHO05D005143 1.4e-58 229.9 183 67.2
Atru.chr1.1579 Acer truncatum HOM05D003738 ORTHO05D005143 5.2e-58 228.0 183 64.5
Rhsim10G0076800 Rhododendron simsii HOM05D003738 ORTHO05D005143 5.2e-58 228.0 184 64.7
Lj2A438T57 Lonicera japonica HOM05D003738 ORTHO05D005143 8.9e-58 227.3 183 64.5
TWI74G0253 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 8.9e-58 227.3 183 65.0
Peaxi162Scf00129g00317 Petunia axillaris HOM05D003738 ORTHO05D005143 1.5e-57 226.5 183 65.0
Peaxi162Scf00458g00011 Petunia axillaris HOM05D003738 ORTHO05D005143 1.5e-57 226.5 183 65.0
CSS0050020 Camellia sinensis var. sinensis HOM05D003738 ORTHO05D005143 2.6e-57 225.7 167 68.9
Cc07_g08440 Coffea canephora HOM05D003738 ORTHO05D005143 3.4e-57 225.3 183 63.4
DCAR_025892 Daucus carota HOM05D003738 ORTHO05D005143 5.8e-57 224.6 184 63.0
CANSAT78G1141 Cannabis sativa HOM05D003738 ORTHO05D005143 7.6e-57 224.2 183 63.4
Aqoxy3G00165 Aquilegia oxysepala HOM05D003738 ORTHO05D005143 1.3e-56 223.4 183 63.9
Eucgr.F02797 Eucalyptus grandis HOM05D003738 ORTHO05D005143 1.3e-56 223.4 183 62.8
TWI77G0590 Tripterygium wilfordii HOM05D003738 ORTHO05D005143 1.3e-56 223.4 183 63.4
vmacro05488 Vaccinium macrocarpon HOM05D003738 ORTHO05D005143 1.3e-56 223.4 183 63.4
arahy.Tifrunner.gnm1.ann1.KYQ4XK Arachis hypogaea HOM05D003738 ORTHO05D005143 1.7e-56 223.0 183 63.4
MELO3C010381.2 Cucumis melo HOM05D003738 ORTHO05D005143 1.7e-56 223.0 183 61.7
Potri.004G094600 Populus trichocarpa HOM05D003738 ORTHO05D005143 2.2e-56 222.6 183 62.8
arahy.Tifrunner.gnm1.ann1.UI9B1P Arachis hypogaea HOM05D003738 ORTHO05D005143 2.9e-56 222.2 183 62.3
Gorai.007G185300 Gossypium raimondii HOM05D003738 ORTHO05D005143 2.9e-56 222.2 183 63.9
Actinidia36345 Actinidia chinensis HOM05D003738 ORTHO05D005143 3.8e-56 221.9 183 63.4
EL10Ac2g04518 Beta vulgaris HOM05D003738 ORTHO05D005143 3.8e-56 221.9 192 59.9
Cpa.g.sc170.16 Carica papaya HOM05D003738 ORTHO05D005143 3.8e-56 221.9 183 63.9
MD09G1258100 Malus domestica HOM05D003738 ORTHO05D005143 3.8e-56 221.9 183 62.8
CsaV3_4G010390 Cucumis sativus L. HOM05D003738 ORTHO05D005143 4.9e-56 221.5 183 61.2
Prupe.3G150000 Prunus persica HOM05D003738 ORTHO05D005143 4.9e-56 221.5 183 62.8
FvH4_1g28990 Fragaria vesca HOM05D003738 ORTHO05D005143 6.4e-56 221.1 183 62.3
FAN19G0768 Fragaria x ananassa HOM05D003738 ORTHO05D005143 6.4e-56 221.1 183 62.3
FAN23G1334 Fragaria x ananassa HOM05D003738 ORTHO05D005143 6.4e-56 221.1 183 62.3
FAN26G1505 Fragaria x ananassa HOM05D003738 ORTHO05D005143 6.4e-56 221.1 183 62.3
Glyma.14G207700 Glycine max HOM05D003738 ORTHO05D005143 6.4e-56 221.1 183 62.3
Gohir.A11G166650 Gossypium hirsutum HOM05D003738 ORTHO05D005143 6.4e-56 221.1 183 63.4
Oeu061823.1 Olea europaea HOM05D003738 ORTHO05D005143 6.4e-56 221.1 183 62.8
Ciclev10011616m.g Citrus clementina HOM05D003738 ORTHO05D005143 8.4e-56 220.7 193 61.1
MD00G1054500 Malus domestica HOM05D003738 ORTHO05D005143 8.4e-56 220.7 183 62.8
Manes.01G113700 Manihot esculenta HOM05D003738 ORTHO05D005143 8.4e-56 220.7 183 61.7
Nn4g24034 Nelumbo nucifera HOM05D003738 ORTHO05D005143 8.4e-56 220.7 183 62.3
PSO017G1959 Papaver somniferum HOM05D003738 ORTHO05D005143 8.4e-56 220.7 183 61.7
Rhsim10G0075800 Rhododendron simsii HOM05D003738 ORTHO05D005143 8.4e-56 220.7 178 64.6
Sabra04G0063900 Salix brachista HOM05D003738 ORTHO05D005143 1.1e-55 220.3 183 62.8
Lj2g0012793 Lotus japonicus HOM05D003738 ORTHO05D005143 1.4e-55 219.9 183 62.8
Phvul.008G243200 Phaseolus vulgaris HOM05D003738 ORTHO05D005143 1.4e-55 219.9 183 61.7
ClCG07G016430 Citrullus lanatus HOM05D003738 ORTHO05D005143 1.9e-55 219.5 183 60.7
HanXRQChr07g0193781 Helianthus annuus HOM05D003738 ORTHO05D005143 1.9e-55 219.5 183 61.7
PSO455G0115 Papaver somniferum HOM05D003738 ORTHO05D005143 1.9e-55 219.5 183 61.7
RcHm_v2.0_Chr3g0494041 Rosa chinensis HOM05D003738 ORTHO05D005143 1.9e-55 219.5 183 62.3
Sc10g0001020 Simmondsia chinensis HOM05D003738 ORTHO05D005143 2.4e-55 219.2 183 62.3
TAR374G1203 Trochodendron aralioides HOM05D003738 ORTHO05D005143 2.4e-55 219.2 183 61.7
VMungo0647G1516 Vigna mungo HOM05D003738 ORTHO05D005143 2.4e-55 219.2 183 61.2
Thecc.04G126300 Theobroma cacao HOM05D003738 ORTHO05D005143 3.2e-55 218.8 184 62.5
Gohir.D11G173000 Gossypium hirsutum HOM05D003738 ORTHO05D005143 4.2e-55 218.4 183 62.3
TPR.G25203 Trifolium pratense HOM05D003738 ORTHO05D005143 4.2e-55 218.4 184 64.1
Zm00001eb336870 Zea mays HOM05D003738 ORTHO05D005143 4.2e-55 218.4 183 62.8
AUR62023216 Chenopodium quinoa HOM05D003738 ORTHO05D005143 5.4e-55 218.0 183 61.7
COL.COLO4_12270 Corchorus olitorius HOM05D003738 ORTHO05D005143 5.4e-55 218.0 184 62.5
MBI16_g21165_MAGBIO Magnolia biondii HOM05D003738 ORTHO05D005143 5.4e-55 218.0 183 62.3
MSTRG.15310 Avicennia marina HOM05D003738 ORTHO05D005143 7.1e-55 217.6 183 61.7
Os01g0505400 Oryza sativa ssp. japonica HOM05D003738 ORTHO05D005143 7.1e-55 217.6 184 61.4
Sed0022193 Sechium edule HOM05D003738 ORTHO05D005143 7.1e-55 217.6 183 61.2
THA.LOC104820853 Tarenaya hassleriana HOM05D003738 ORTHO05D005143 7.1e-55 217.6 183 63.9
ECA238G0020 Erigeron canadensis HOM05D003738 ORTHO05D005143 1.2e-54 216.9 183 60.7
PSO170G1643 Papaver somniferum HOM05D003738 ORTHO05D005143 1.2e-54 216.9 183 61.2
AUR62023263 Chenopodium quinoa HOM05D003738 ORTHO05D005143 2.1e-54 216.1 183 61.2
Duzib133G1513 Durio zibethinus HOM05D003738 ORTHO05D005143 2.1e-54 216.1 183 61.7
Glyma.02G238800 Glycine max HOM05D003738 ORTHO05D005143 2.1e-54 216.1 183 60.1
Ciclev10011371m.g Citrus clementina HOM05D003738 ORTHO05D005143 2.7e-54 215.7 183 62.3
Hund13699 Selenicereus undatus HOM05D003738 ORTHO05D005143 2.7e-54 215.7 183 61.2
COL.COLO4_27155 Corchorus olitorius HOM05D003738 ORTHO05D005143 3.5e-54 215.3 183 61.7
Ah.16g101450 Amaranthus hybridus HOM05D003738 ORTHO05D005143 4.6e-54 214.9 183 61.2
Lalb_Chr02g0160571 Lupinus albus HOM05D003738 ORTHO05D005143 4.6e-54 214.9 183 60.1
AL6G28450 Arabidopsis lyrata HOM05D003738 ORTHO05D005143 6.0e-54 214.5 197 58.9
Duzib138G1092 Durio zibethinus HOM05D003738 ORTHO05D005143 6.0e-54 214.5 183 62.3
Lsat_1_v5_gn_2_80860 Lactuca sativa HOM05D003738 ORTHO05D005143 1.0e-53 213.8 183 60.1
HPP92_003826 Vanilla planifolia HOM05D003738 ORTHO05D005143 1.3e-53 213.4 183 62.3
Haze_14195 Corylus avellana HOM05D003738 ORTHO05D005143 2.3e-53 212.6 184 59.8
AT5G17380 Arabidopsis thaliana HOM05D003738 ORTHO05D005143 3.9e-53 211.8 183 61.2
A10p22030 Brassica napus HOM05D003738 ORTHO05D005143 5.1e-53 211.5 197 57.9
BraA10t44260Z Brassica rapa HOM05D003738 ORTHO05D005143 5.1e-53 211.5 197 57.9
Carub.0006s1559 Capsella rubella HOM05D003738 ORTHO05D005143 5.1e-53 211.5 197 57.9
Migut.L00189 Erythranthe guttata HOM05D003738 ORTHO05D005143 5.1e-53 211.5 183 60.1
CARHR195830 Cardamine hirsuta HOM05D003738 ORTHO05D005143 6.6e-53 211.1 197 57.9
Cfa007882 Carpinus fangiana HOM05D003738 ORTHO05D005143 6.6e-53 211.1 183 59.6
Lalb_Chr06g0176761 Lupinus albus HOM05D003738 ORTHO05D005143 6.6e-53 211.1 183 59.0
Sp6g26840 Schrenkiella parvula HOM05D003738 ORTHO05D005143 6.6e-53 211.1 183 60.1
Ca_04135_v3 Cicer arietinum L. HOM05D003738 ORTHO05D005143 8.7e-53 210.7 184 60.9
C09p59780 Brassica napus HOM05D003738 ORTHO05D005143 1.5e-52 209.9 183 60.1
BolC9t58818H Brassica oleracea HOM05D003738 ORTHO05D005143 2.5e-52 209.1 183 60.1
CDE06G1483 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 2.5e-52 209.1 183 59.0
Thhalv10013104m.g Eutrema salsugineum HOM05D003738 ORTHO05D005143 3.3e-52 208.8 183 59.6
SEGI_09825 Sequoiadendron giganteum HOM05D003738 ORTHO05D005143 4.3e-52 208.4 183 58.5
SGA_v2.0_scaffold329G48870 Striga asiatica HOM05D003738 ORTHO05D005143 4.3e-52 208.4 183 59.6
BcaB08g36776 Brassica carinata HOM05D003738 ORTHO05D005143 5.6e-52 208.0 183 59.6
BcaC04g18797 Brassica carinata HOM05D003738 ORTHO05D005143 5.6e-52 208.0 183 59.6
CiPaw.03G065800 Carya illinoinensis HOM05D003738 ORTHO05D005143 5.6e-52 208.0 183 58.5
Psat1g052800 Pisum sativum HOM05D003738 ORTHO05D005143 9.6e-52 207.2 184 59.8
Aa31LG11G12270 Aethionema arabicum HOM05D003738 ORTHO05D005143 1.3e-51 206.8 183 60.1
Medtr6g004200 Medicago truncatula HOM05D003738 ORTHO05D005143 2.8e-51 205.7 184 60.3
QL02p049823 Quercus lobata HOM05D003738 ORTHO05D005143 4.8e-51 204.9 187 59.4
ATR0057G018 Amborella trichopoda HOM05D003738 ORTHO05D005143 6.9e-50 201.1 183 55.2
SHI25638 Sapria himalayana HOM05D003738 ORTHO05D005143 6.9e-50 201.1 183 57.9
AagrBONN_evm.TU.Sc2ySwM_369.580 Anthoceros agrestis HOM05D003738 ORTHO05D005143 7.6e-49 197.6 183 56.8
Pp3c3_25360 Physcomitrium patens HOM05D003738 ORTHO05D005143 2.9e-48 195.7 183 55.2
Mapoly0099s0049 Marchantia polymorpha HOM05D003738 ORTHO05D005143 4.6e-46 188.3 183 52.5
SMO196G0015 Selaginella moellendorffii HOM05D003738 ORTHO05D005143 5.6e-44 181.4 183 50.3
Rhsim10G0076600 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.2e-41 173.7 174 55.7
CBR_g39223 Chara braunii HOM05D003738 ORTHO05D005143 4.2e-39 165.2 188 43.1
Rhsim05G0052500 Rhododendron simsii HOM05D003738 ORTHO05D005143 1.6e-38 163.3 124 67.7
SalBow4G0814 Salvia bowleyana HOM05D003738 ORTHO05D005143 6.0e-38 161.4 148 58.1
Dinv14852 Davidia involucrata HOM05D003738 ORTHO05D005143 3.9e-37 158.7 103 75.7
MD16G1277100 Malus domestica HOM05D003738 ORTHO05D005234 1.4e-34 150.2 142 57.7
Zm00001eb155100 Zea mays HOM05D003738 ORTHO05D005143 3.1e-34 149.1 138 56.5
Rhsim10G0074000 Rhododendron simsii HOM05D003738 ORTHO05D005143 8.4e-32 141.0 91 75.8
arahy.Tifrunner.gnm1.ann1.95JV46 Arachis hypogaea HOM05D003738 ORTHO05D005143 2.1e-30 136.3 145 53.8
arahy.Tifrunner.gnm1.ann1.RD77R5 Arachis hypogaea HOM05D003738 ORTHO05D021496 1.8e-29 133.3 94 70.2
arahy.Tifrunner.gnm1.ann1.SAWF7B Arachis hypogaea HOM05D003738 ORTHO05D021496 3.3e-28 129.0 104 64.4
Rhsim10G0075200 Rhododendron simsii HOM05D003738 ORTHO05D005143 7.4e-28 127.9 89 70.8
TAR629G2166 Trochodendron aralioides HOM05D003738 ORTHO05D005143 6.2e-27 124.8 183 42.1
arahy.Tifrunner.gnm1.ann1.P0BYU6 Arachis hypogaea HOM05D003738 ORTHO05D005143 1.6e-22 110.2 127 50.4
Lsat_1_v5_gn_5_125600 Lactuca sativa HOM05D003738 ORTHO05D021496 1.3e-21 107.1 69 75.4
Lsat_1_v5_gn_3_101660 Lactuca sativa HOM05D003738 ORTHO05D021496 1.5e-20 103.6 70 71.4
arahy.Tifrunner.gnm1.ann1.PVN2ZV Arachis hypogaea HOM05D003738 ORTHO05D021496 9.7e-20 100.9 74 66.2
PRCOL_00004783 Prasinoderma coloniale HOM05D003738 ORTHO05D005143 3.4e-17 92.4 95 47.4
Zm00001eb381790 Zea mays HOM05D003738 ORTHO05D021496 7.7e-17 91.3 60 71.7
Lsat_1_v5_gn_1_20020 Lactuca sativa HOM05D003738 ORTHO05D005143 5.1e-13 78.6 45 82.2
Rhsim10G0074200 Rhododendron simsii HOM05D003738 ORTHO05D005143 5.1e-13 78.6 94 46.8
arahy.Tifrunner.gnm1.ann1.86RIW1 Arachis hypogaea HOM05D003738 ORTHO05D005143 1.5e-12 77.0 79 57.0
arahy.Tifrunner.gnm1.ann1.996DKV Arachis hypogaea HOM05D003738 ORTHO05D005143 3.1e-10 69.3 45 73.3
arahy.Tifrunner.gnm1.ann1.S5LGPQ Arachis hypogaea HOM05D003738 ORTHO05D005143 1.5e-09 67.0 61 60.7
CDE07G0683 Ceratophyllum demersum HOM05D003738 ORTHO05D005143 2.0e-09 66.6 44 65.9
Rhsim10G0074800 Rhododendron simsii HOM05D003738 ORTHO05D005143 2.9e-08 62.8 60 51.7
arahy.Tifrunner.gnm1.ann1.J2B3IW Arachis hypogaea HOM05D003738 ORTHO05D005143 5.0e-08 62.0 67 49.3
arahy.Tifrunner.gnm1.ann1.8AFI1C Arachis hypogaea HOM05D003738 ORTHO05D005143 6.5e-08 61.6 113 36.3
RhsimUnG0202300 Rhododendron simsii HOM05D003738 ORTHO05D005143 4.2e-07 58.9 36 72.2
arahy.Tifrunner.gnm1.ann1.XG2Q3Z Arachis hypogaea HOM05D003738 ORTHO05D005143 1.6e-06 57.0 70 51.4
HanXRQChr09g0267561 Helianthus annuus HOM05D003738 ORTHO05D005143 2.1e-06 56.6 36 72.2


User provided reference genes

Program Settings