Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1001.10 Capsicum annuum HOM05D003658 ORTHO05D004457 5.8e-253 877.1 449 100.0
Sopen06g031760 Solanum pennellii HOM05D003658 ORTHO05D004457 3.6e-226 788.1 450 91.8
Solyc06g075340.4 Solanum lycopersicum HOM05D003658 ORTHO05D004457 1.0e-225 786.6 450 91.6
PGSC0003DMG400007504 Solanum tuberosum HOM05D003658 ORTHO05D004457 6.7e-225 783.9 452 92.0
Nitab4.5_0000106g0020 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.5e-221 772.7 455 90.3
Peaxi162Scf00072g00510 Petunia axillaris HOM05D003658 ORTHO05D004457 1.7e-220 769.2 440 91.1
Nitab4.5_0010960g0010 Nicotiana tabacum HOM05D003658 ORTHO05D004457 6.7e-217 757.3 445 89.7
Cc10_g16400 Coffea canephora HOM05D003658 ORTHO05D004457 8.8e-201 703.7 461 82.0
Lj4A607T48 Lonicera japonica HOM05D003658 ORTHO05D004457 7.5e-200 700.7 456 81.6
Actinidia03749 Actinidia chinensis HOM05D003658 ORTHO05D004457 9.7e-200 700.3 455 82.2
CSS0031195 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.7e-199 699.5 463 80.6
CSS0048503 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.7e-199 699.5 462 80.7
CSS0000103 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 6.3e-199 697.6 449 81.1
CSS0002392 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 6.3e-199 697.6 449 81.1
Oeu046772.1 Olea europaea HOM05D003658 ORTHO05D004457 1.7e-196 689.5 450 80.7
TAR623G0185 Trochodendron aralioides HOM05D003658 ORTHO05D004457 7.2e-195 684.1 450 79.8
Atru.chr3.3712 Acer truncatum HOM05D003658 ORTHO05D004457 1.6e-194 682.9 465 77.4
SGA_v2.0_scaffold19G08651 Striga asiatica HOM05D003658 ORTHO05D004457 2.1e-194 682.6 420 85.5
EL10Ac1g00972 Beta vulgaris HOM05D003658 ORTHO05D004457 2.7e-194 682.2 448 79.9
Haze_23933 Corylus avellana HOM05D003658 ORTHO05D004457 4.7e-194 681.4 451 78.9
MSTRG.22380 Avicennia marina HOM05D003658 ORTHO05D004457 6.1e-194 681.0 442 80.1
PGR031G3879 Punica granatum HOM05D003658 ORTHO05D004457 1.0e-193 680.2 448 79.5
Sc12g0008310 Simmondsia chinensis HOM05D003658 ORTHO05D004457 1.0e-193 680.2 446 79.6
DCAR_016522 Daucus carota HOM05D003658 ORTHO05D004457 1.4e-193 679.9 441 81.2
THA.LOC104800615 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 1.4e-193 679.9 360 94.4
TAR369G0890 Trochodendron aralioides HOM05D003658 ORTHO05D004457 1.4e-193 679.9 457 79.0
Ciclev10027703m.g Citrus clementina HOM05D003658 ORTHO05D004457 1.8e-193 679.5 447 80.1
THA.LOC104826356 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 1.8e-193 679.5 447 80.1
unitig_8.g4304 Utricularia gibba HOM05D003658 ORTHO05D004457 2.3e-193 679.1 362 94.2
Prupe.6G093800 Prunus persica HOM05D003658 ORTHO05D004457 4.0e-193 678.3 453 78.8
Aqoxy7G00983 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 1.2e-192 676.8 453 78.6
COL.COLO4_32786 Corchorus olitorius HOM05D003658 ORTHO05D004457 2.0e-192 676.0 444 80.0
CsaV3_7G021350 Cucumis sativus L. HOM05D003658 ORTHO05D004457 2.0e-192 676.0 450 78.4
Aa31LG4G17270 Aethionema arabicum HOM05D003658 ORTHO05D004457 3.4e-192 675.2 360 93.6
vmacro14471 Vaccinium macrocarpon HOM05D003658 ORTHO05D004457 3.4e-192 675.2 452 79.6
Carub.0001s2812 Capsella rubella HOM05D003658 ORTHO05D004457 5.7e-192 674.5 444 79.7
Gohir.D01G046800 Gossypium hirsutum HOM05D003658 ORTHO05D004457 1.7e-191 672.9 447 80.1
Gorai.002G066300 Gossypium raimondii HOM05D003658 ORTHO05D004457 1.7e-191 672.9 447 80.1
Sed0019661 Sechium edule HOM05D003658 ORTHO05D004457 1.7e-191 672.9 371 90.3
QL01p036935 Quercus lobata HOM05D003658 ORTHO05D004457 2.2e-191 672.5 452 79.6
MSTRG.24196 Avicennia marina HOM05D003658 ORTHO05D004457 2.8e-191 672.2 442 78.3
CDE08G0949 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 2.8e-191 672.2 455 78.2
MD11G1125100 Malus domestica HOM05D003658 ORTHO05D004457 2.8e-191 672.2 457 79.0
RcHm_v2.0_Chr2g0124141 Rosa chinensis HOM05D003658 ORTHO05D004457 2.8e-191 672.2 457 78.3
RcHm_v2.0_Chr7g0219181 Rosa chinensis HOM05D003658 ORTHO05D004457 2.8e-191 672.2 445 80.0
Thecc.07G099900 Theobroma cacao HOM05D003658 ORTHO05D004457 2.8e-191 672.2 448 79.9
MELO3C013218.2 Cucumis melo HOM05D003658 ORTHO05D004457 3.7e-191 671.8 450 78.4
HanXRQChr09g0251621 Helianthus annuus HOM05D003658 ORTHO05D004457 3.7e-191 671.8 441 78.2
CANSAT35G1266 Cannabis sativa HOM05D003658 ORTHO05D004457 4.8e-191 671.4 459 78.2
Gohir.A01G060300 Gossypium hirsutum HOM05D003658 ORTHO05D004457 4.8e-191 671.4 408 85.5
TWI75G0848 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 4.8e-191 671.4 445 80.4
Nn2g13001 Nelumbo nucifera HOM05D003658 ORTHO05D004457 8.3e-191 670.6 455 78.9
TWI31G0613 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 8.3e-191 670.6 440 80.9
AL1G43750 Arabidopsis lyrata HOM05D003658 ORTHO05D004457 1.1e-190 670.2 444 79.3
CARHR029540 Cardamine hirsuta HOM05D003658 ORTHO05D004457 1.1e-190 670.2 379 88.9
arahy.Tifrunner.gnm1.ann1.Z66RMF Arachis hypogaea HOM05D003658 ORTHO05D004457 1.4e-190 669.8 447 79.6
Cfa011371 Carpinus fangiana HOM05D003658 ORTHO05D004457 1.4e-190 669.8 450 77.8
Migut.N03234 Erythranthe guttata HOM05D003658 ORTHO05D004457 1.4e-190 669.8 449 77.5
Duzib170G0243 Durio zibethinus HOM05D003658 ORTHO05D004457 1.8e-190 669.5 405 85.4
Duzib213G0488 Durio zibethinus HOM05D003658 ORTHO05D004457 1.8e-190 669.5 446 79.1
Manes.04G025400 Manihot esculenta HOM05D003658 ORTHO05D004457 1.8e-190 669.5 448 78.8
ClCG09G021680 Citrullus lanatus HOM05D003658 ORTHO05D004457 2.4e-190 669.1 449 78.8
Nn3g19734 Nelumbo nucifera HOM05D003658 ORTHO05D004457 4.1e-190 668.3 451 78.0
CiPaw.13G106400 Carya illinoinensis HOM05D003658 ORTHO05D004457 7.0e-190 667.5 381 89.0
Thhalv10006598m.g Eutrema salsugineum HOM05D003658 ORTHO05D004457 7.0e-190 667.5 448 79.9
Sed0011385 Sechium edule HOM05D003658 ORTHO05D004457 7.0e-190 667.5 443 79.5
AUR62033373 Chenopodium quinoa HOM05D003658 ORTHO05D004457 9.1e-190 667.2 444 79.3
Sp1g25780 Schrenkiella parvula HOM05D003658 ORTHO05D004457 9.1e-190 667.2 451 77.4
Hund30148 Selenicereus undatus HOM05D003658 ORTHO05D004457 9.1e-190 667.2 444 80.2
Hund30149 Selenicereus undatus HOM05D003658 ORTHO05D004457 9.1e-190 667.2 444 80.2
ECA234G0865 Erigeron canadensis HOM05D003658 ORTHO05D004457 1.2e-189 666.8 438 79.0
PSO782G2702 Papaver somniferum HOM05D003658 ORTHO05D004457 1.2e-189 666.8 452 79.2
Rhsim01G0220800 Rhododendron simsii HOM05D003658 ORTHO05D004457 1.2e-189 666.8 443 80.4
Cfa011369 Carpinus fangiana HOM05D003658 ORTHO05D004457 2.0e-189 666.0 453 77.7
Lj3g0017853 Lotus japonicus HOM05D003658 ORTHO05D004457 3.5e-189 665.2 359 92.2
AT1G29900 Arabidopsis thaliana HOM05D003658 ORTHO05D004457 4.5e-189 664.8 448 78.6
arahy.Tifrunner.gnm1.ann1.1XIG7Z Arachis hypogaea HOM05D003658 ORTHO05D004457 4.5e-189 664.8 359 92.2
BcaC05g27003 Brassica carinata HOM05D003658 ORTHO05D004457 5.9e-189 664.5 441 78.9
BolC5t31587H Brassica oleracea HOM05D003658 ORTHO05D004457 5.9e-189 664.5 441 78.9
MBI17_g43655_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 5.9e-189 664.5 357 93.0
CDE02G3705 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 7.7e-189 664.1 455 77.6
BraA09t39180Z Brassica rapa HOM05D003658 ORTHO05D004457 1.0e-188 663.7 437 79.6
Lsat_1_v5_gn_9_7920 Lactuca sativa HOM05D003658 ORTHO05D004457 1.7e-188 662.9 448 77.2
C05p28660 Brassica napus HOM05D003658 ORTHO05D004457 2.3e-188 662.5 441 78.7
AUR62004284 Chenopodium quinoa HOM05D003658 ORTHO05D004457 2.3e-188 662.5 444 78.6
arahy.Tifrunner.gnm1.ann1.HT4L1Y Arachis hypogaea HOM05D003658 ORTHO05D004457 2.9e-188 662.1 450 78.9
A09p36600 Brassica napus HOM05D003658 ORTHO05D004457 2.9e-188 662.1 443 77.9
HanXRQChr15g0493841 Helianthus annuus HOM05D003658 ORTHO05D004457 3.8e-188 661.8 441 78.5
Lalb_Chr24g0394441 Lupinus albus HOM05D003658 ORTHO05D004457 3.8e-188 661.8 359 91.6
arahy.Tifrunner.gnm1.ann1.F0P9EH Arachis hypogaea HOM05D003658 ORTHO05D004457 5.0e-188 661.4 426 81.5
BcaB07g32573 Brassica carinata HOM05D003658 ORTHO05D004457 5.0e-188 661.4 428 79.7
VMungo1080G1458 Vigna mungo HOM05D003658 ORTHO05D004457 5.0e-188 661.4 359 91.9
FAN26G3193 Fragaria x ananassa HOM05D003658 ORTHO05D004457 8.6e-188 660.6 448 78.1
Lalb_Chr14g0374811 Lupinus albus HOM05D003658 ORTHO05D004457 1.1e-187 660.2 359 91.9
FvH4_1g25660 Fragaria vesca HOM05D003658 ORTHO05D004457 3.3e-187 658.7 449 77.7
Phvul.005G137400 Phaseolus vulgaris HOM05D003658 ORTHO05D004457 3.3e-187 658.7 358 91.6
ATR0561G124 Amborella trichopoda HOM05D003658 ORTHO05D004457 4.2e-187 658.3 447 78.1
arahy.Tifrunner.gnm1.ann1.SY27G3 Arachis hypogaea HOM05D003658 ORTHO05D004457 5.5e-187 657.9 447 78.5
Glyma.13G328600 Glycine max HOM05D003658 ORTHO05D004457 5.5e-187 657.9 359 91.4
FAN28G2851 Fragaria x ananassa HOM05D003658 ORTHO05D004457 7.2e-187 657.5 449 77.7
Glyma.15G045100 Glycine max HOM05D003658 ORTHO05D004457 9.5e-187 657.1 359 91.1
MD03G1111400 Malus domestica HOM05D003658 ORTHO05D004457 2.8e-186 655.6 450 78.2
Medtr2g093280 Medicago truncatula HOM05D003658 ORTHO05D004457 3.6e-186 655.2 357 92.4
Nn2g10669 Nelumbo nucifera HOM05D003658 ORTHO05D004457 4.7e-186 654.8 453 75.7
Lalb_Chr22g0350161 Lupinus albus HOM05D003658 ORTHO05D004457 6.1e-186 654.4 444 77.5
Potri.010G023100 Populus trichocarpa HOM05D003658 ORTHO05D004457 6.1e-186 654.4 445 78.0
Ca_01436_v3 Cicer arietinum L. HOM05D003658 ORTHO05D004457 2.3e-185 652.5 359 91.4
Dinv32798 Davidia involucrata HOM05D003658 ORTHO05D004457 1.5e-184 649.8 447 78.5
Sabra10G0015500 Salix brachista HOM05D003658 ORTHO05D004457 1.5e-184 649.8 405 82.5
Psat5g277200 Pisum sativum HOM05D003658 ORTHO05D004457 2.6e-184 649.0 359 91.1
DCAR_026092 Daucus carota HOM05D003658 ORTHO05D004457 3.4e-184 648.7 348 93.1
Eucgr.F04457 Eucalyptus grandis HOM05D003658 ORTHO05D004457 4.4e-184 648.3 348 93.4
Ah.05g175890 Amaranthus hybridus HOM05D003658 ORTHO05D004457 9.8e-184 647.1 424 79.5
SMO116G0226 Selaginella moellendorffii HOM05D003658 ORTHO05D004457 2.8e-183 645.6 394 83.2
Mapoly0126s0034 Marchantia polymorpha HOM05D003658 ORTHO05D004457 3.7e-183 645.2 359 89.7
Pp3c1_18250 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.1e-182 643.7 364 89.0
HPP92_005503 Vanilla planifolia HOM05D003658 ORTHO05D004457 2.7e-181 639.0 357 88.5
AagrBONN_evm.TU.Sc2ySwM_228.578 Anthoceros agrestis HOM05D003658 ORTHO05D004457 1.5e-179 633.3 357 89.1
Pp3c2_19430 Physcomitrium patens HOM05D003658 ORTHO05D004457 2.5e-179 632.5 357 87.7
SHI06033 Sapria himalayana HOM05D003658 ORTHO05D004457 4.4e-176 621.7 371 83.3
CBR_g16075 Chara braunii HOM05D003658 ORTHO05D004457 9.8e-176 620.5 356 86.0
arahy.Tifrunner.gnm1.ann1.YNZQ4S Arachis hypogaea HOM05D003658 ORTHO05D004457 1.7e-175 619.8 359 87.7
Zm00001eb356970 Zea mays HOM05D003658 ORTHO05D004457 5.4e-174 614.8 359 84.7
Zm00001eb160030 Zea mays HOM05D003658 ORTHO05D004457 7.0e-174 614.4 359 85.0
PRCOL_00001523 Prasinoderma coloniale HOM05D003658 ORTHO05D004457 2.4e-166 589.3 358 81.3
MCO07G210 Micromonas commoda HOM05D003658 ORTHO05D004457 2.5e-163 579.3 348 81.6
Nitab4.5_0000816g0110 Nicotiana tabacum HOM05D003658 ORTHO05D004457 5.2e-161 571.6 443 71.8
Cre08.g358580 Chlamydomonas reinhardtii HOM05D003658 ORTHO05D004457 1.6e-157 560.1 359 76.9
TPR.G11612 Trifolium pratense HOM05D003658 ORTHO05D004457 3.4e-152 542.3 428 70.3
Actinidia07110 Actinidia chinensis HOM05D003658 ORTHO05D004457 3.8e-151 538.9 290 94.1
Oeu047812.2 Olea europaea HOM05D003658 ORTHO05D004457 9.2e-150 534.3 442 66.7
Nitab4.5_0010336g0040 Nicotiana tabacum HOM05D003658 ORTHO05D004457 2.3e-148 529.6 445 67.6
MBI17_g19523_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 7.3e-147 524.6 290 92.4
GSVIVG01025125001 Vitis vinifera HOM05D003658 ORTHO05D004457 2.2e-143 513.1 348 77.0
MD12G1166200 Malus domestica HOM05D003658 ORTHO05D004457 4.8e-138 495.4 293 84.6
Haze_26994 Corylus avellana HOM05D003658 ORTHO05D004457 1.1e-137 494.2 410 62.9
SalBow6G4004 Salvia bowleyana HOM05D003658 ORTHO05D004457 1.2e-136 490.7 263 93.2
Actinidia24075 Actinidia chinensis HOM05D003658 ORTHO05D004457 1.9e-134 483.4 450 61.1
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.8e-121 440.3 361 59.6
Zm00001eb440860 Zea mays HOM05D003658 ORTHO05D004457 7.7e-112 408.3 223 90.1
Cpa.g.sc81.16 Carica papaya HOM05D003658 ORTHO05D004457 7.4e-107 391.7 555 44.7
Cfa022738 Carpinus fangiana HOM05D003658 ORTHO05D004457 1.2e-96 357.8 353 51.3
Haze_26134 Corylus avellana HOM05D003658 ORTHO05D004457 8.8e-92 341.7 352 49.4
Glyma.20G148821 Glycine max HOM05D003658 ORTHO05D004457 2.1e-85 320.5 190 82.6
Peaxi162Scf00809g00417 Petunia axillaris HOM05D003658 ORTHO05D004457 6.3e-66 255.8 282 57.1
ATR0609G052 Amborella trichopoda HOM05D003658 ORTHO05D004457 2.1e-53 214.2 120 89.2
Haze_26812 Corylus avellana HOM05D003658 ORTHO05D004457 3.5e-48 196.8 333 35.4
CAN.G1001.11 Capsicum annuum HOM05D003658 ORTHO05D004457 1.9e-41 174.5 295 34.6
Dinv14502 Davidia involucrata HOM05D003658 ORTHO05D004457 3.5e-40 170.2 91 92.3
TAR633G0489 Trochodendron aralioides HOM05D003658 ORTHO05D004457 1.0e-39 168.7 107 78.5
Glyma.20G148861 Glycine max HOM05D003658 ORTHO05D004457 1.1e-38 165.2 161 60.2
Sc12g0005830 Simmondsia chinensis HOM05D003658 ORTHO05D004457 2.0e-35 154.5 187 51.9
Dinv14501 Davidia involucrata HOM05D003658 ORTHO05D004457 1.0e-31 142.1 324 29.6
Aqoxy84s009 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 6.9e-28 129.4 238 33.2
CAN.G916.7 Capsicum annuum HOM05D003658 ORTHO05D003835 1.8e-20 104.8 58 91.4
Sc12g0005810 Simmondsia chinensis HOM05D003658 ORTHO05D004457 2.9e-18 97.4 100 47.0
Lj4C607T5 Lonicera japonica HOM05D003658 ORTHO05D004457 1.1e-17 95.5 279 26.9
Lj4C607T13 Lonicera japonica HOM05D003658 ORTHO05D004457 5.6e-14 83.2 208 27.4
CAN.G185.26 Capsicum annuum HOM05D000875 ORTHO05D000684 4.8e-13 80.1 53 79.2
Os01g0570700 Oryza sativa ssp. japonica HOM05D003658 ORTHO05D004457 1.2e-11 75.5 131 33.6
Cc01_g11620 Coffea canephora HOM05D003658 ORTHO05D004457 2.2e-10 71.2 96 41.7
Aqoxy7G00992 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 2.9e-10 70.9 152 29.6
Nn3g17258 Nelumbo nucifera HOM05D003658 ORTHO05D004457 8.4e-10 69.3 50 72.0
Glyma.20G148741 Glycine max HOM05D003658 ORTHO05D004457 2.5e-09 67.8 116 32.8
SEGI_13014 Sequoiadendron giganteum HOM05D003658 ORTHO05D037587 7.1e-09 66.2 56 66.1
TAR636G1956 Trochodendron aralioides HOM05D003658 ORTHO05D415344 6.0e-08 63.2 39 79.5
TAR633G2601 Trochodendron aralioides HOM05D003658 ORTHO05D004457 5.1e-07 60.1 102 34.3
Sc12g0005800 Simmondsia chinensis HOM05D003658 ORTHO05D004457 1.5e-06 58.5 126 28.6


User provided reference genes

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