Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 0.0e+00 1411.0 717 100.0
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 0.0e+00 1367.4 717 96.5
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 0.0e+00 1328.2 677 99.3
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 0.0e+00 1318.5 687 97.1
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 0.0e+00 1142.5 708 83.2
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 0.0e+00 1113.6 701 82.9
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 0.0e+00 1112.1 740 78.1
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 0.0e+00 1110.1 696 80.9
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 0.0e+00 1096.3 697 79.9
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 0.0e+00 1089.3 706 78.9
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 0.0e+00 1088.2 709 79.3
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.3e-296 1021.9 682 76.4
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 1.2e-281 973.0 704 70.7
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 8.7e-243 844.0 758 60.0
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 2.1e-241 839.3 759 60.3
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 4.0e-240 835.1 733 60.0
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 6.9e-240 834.3 716 60.9
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 6.9e-240 834.3 757 57.6
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 8.4e-238 827.4 751 58.9
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 8.4e-238 827.4 752 59.3
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 1.9e-237 826.2 737 58.8
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 1.2e-236 823.5 759 58.9
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 1.6e-236 823.2 754 58.1
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 1.6e-236 823.2 721 60.2
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 1.8e-235 819.7 745 59.2
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 3.0e-235 818.9 752 58.8
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 3.9e-235 818.5 716 60.3
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 6.7e-235 817.8 703 60.3
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 6.7e-235 817.8 732 58.6
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 1.9e-234 816.2 757 57.9
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 7.4e-234 814.3 713 60.2
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 9.7e-234 813.9 762 57.7
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 2.8e-233 812.4 754 58.1
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 3.7e-233 812.0 704 60.9
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 4.8e-233 811.6 762 57.6
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 6.3e-233 811.2 703 60.0
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.4e-232 810.1 721 58.7
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 1.8e-232 809.7 758 56.6
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 6.9e-232 807.7 683 60.6
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 1.2e-231 807.0 695 60.6
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 1.2e-231 807.0 750 57.5
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.5e-231 806.6 729 58.8
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 2.0e-231 806.2 742 58.0
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 3.4e-231 805.4 741 57.9
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 5.9e-231 804.7 715 59.2
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 5.9e-231 804.7 704 59.5
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 1.0e-230 803.9 755 57.5
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 1.0e-230 803.9 722 58.7
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 5.0e-230 801.6 715 58.9
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 1.1e-229 800.4 728 58.5
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 1.4e-229 800.0 690 60.6
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 4.2e-229 798.5 759 57.2
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 7.2e-229 797.7 747 57.2
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 9.4e-229 797.3 739 58.1
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 9.4e-229 797.3 751 57.4
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 1.2e-228 797.0 806 54.3
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 1.2e-228 797.0 708 58.3
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 1.6e-228 796.6 719 58.1
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 1.6e-228 796.6 743 56.8
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.7e-228 795.8 765 56.9
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 2.7e-228 795.8 742 56.7
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 7.9e-228 794.3 723 58.9
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 1.4e-227 793.5 723 58.8
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 1.8e-227 793.1 746 57.1
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 6.7e-227 791.2 764 56.5
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.9e-226 789.6 746 56.8
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.9e-226 789.6 746 56.8
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 3.3e-226 788.9 750 56.0
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 3.3e-226 788.9 739 57.2
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 7.4e-226 787.7 755 57.1
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 1.7e-225 786.6 784 54.6
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 2.8e-225 785.8 738 56.5
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 1.1e-224 783.9 747 56.1
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 2.4e-224 782.7 751 56.6
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 3.1e-224 782.3 760 55.0
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 5.3e-224 781.6 760 56.6
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 4.2e-221 771.9 772 54.8
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 2.7e-220 769.2 771 54.1
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 5.1e-219 765.0 681 57.9
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.8e-216 756.5 679 58.5
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 3.1e-216 755.7 679 58.2
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 1.5e-215 753.4 713 56.0
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 1.4e-211 740.3 751 55.4
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 4.8e-209 731.9 702 54.0
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 8.2e-209 731.1 727 55.4
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 5.9e-207 724.9 984 44.0
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 8.5e-206 721.1 707 55.4
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 1.5e-202 710.3 936 45.2
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 2.1e-196 689.9 862 46.4
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 2.2e-193 679.9 638 57.7
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 1.8e-192 676.8 676 53.3
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 7.0e-192 674.9 654 56.1
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 4.2e-189 665.6 724 53.6
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 4.7e-188 662.1 603 57.0
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 1.5e-178 630.6 762 48.2
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 1.6e-172 610.5 682 48.4
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 2.3e-166 590.1 562 57.5
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 2.1e-159 567.0 518 58.3
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 8.6e-158 561.6 784 43.4
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 3.3e-157 559.7 486 61.5
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 2.4e-155 553.5 736 44.6
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 6.6e-150 535.4 602 51.5
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 4.8e-140 502.7 723 41.6
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.6e-135 487.6 450 58.0
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.1e-123 446.8 490 52.7
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 9.0e-123 445.3 388 59.5
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.9e-121 439.5 518 50.4
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 1.6e-116 424.5 384 57.3
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 5.5e-104 382.9 447 47.2
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 4.4e-85 320.1 296 57.4
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 9.8e-85 318.9 667 35.1
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.9e-81 307.4 327 55.0
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 9.4e-80 302.4 163 89.6
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 7.7e-74 282.7 296 55.7
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.5e-72 278.5 195 72.8
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 5.7e-69 266.5 1012 24.8
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.6e-64 250.0 265 50.2
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 1.6e-63 248.4 189 62.4
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 7.0e-59 233.0 261 50.2
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 1.7e-57 228.4 664 30.0
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 8.3e-52 209.5 160 59.4
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 2.5e-48 198.0 234 49.6
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 5.2e-46 190.3 351 38.7
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 1.3e-44 185.7 157 57.3
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 3.4e-37 161.0 124 61.3
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 6.4e-28 130.2 97 67.0
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 2.4e-27 128.3 215 38.1
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 3.5e-26 124.4 255 38.4
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.3e-25 121.7 128 54.7
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 8.7e-25 119.8 125 55.2
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 3.8e-20 104.4 189 33.3
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 2.7e-18 98.2 95 58.9
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.5e-18 97.8 88 62.5
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 1.8e-14 85.5 64 67.2
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 1.5e-13 82.4 63 65.1
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 1.6e-10 72.4 170 27.1
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 4.6e-10 70.9 158 25.9
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 6.0e-10 70.5 118 31.4
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 3.0e-09 68.2 168 31.0
Aa31sc1955G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 1.3e-07 62.8 43 67.4
Aa31sc2119G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 1.3e-07 62.8 43 67.4
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.6e-07 62.4 196 29.1
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 1.8e-06 58.9 52 55.8


User provided reference genes

Program Settings