Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 0.0e+00 1588.9 813 100.0
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 0.0e+00 1558.5 839 95.9
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 0.0e+00 1548.1 814 97.9
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 0.0e+00 1428.3 813 88.2
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 0.0e+00 1427.5 813 89.3
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 0.0e+00 1410.6 813 87.6
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 0.0e+00 1409.4 813 87.7
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 0.0e+00 1400.6 813 87.3
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 0.0e+00 1375.1 814 86.2
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 0.0e+00 1320.4 812 84.2
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 0.0e+00 1306.6 778 89.1
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 0.0e+00 1193.7 626 97.6
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 0.0e+00 1186.0 813 76.0
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 0.0e+00 1164.8 813 72.9
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 5.5e-302 1040.8 814 66.0
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 4.4e-299 1031.2 550 98.2
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 3.7e-298 1028.1 817 64.6
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 1.8e-297 1025.8 817 64.6
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 5.9e-296 1020.8 817 64.5
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 7.2e-294 1013.8 814 64.4
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 1.2e-293 1013.1 815 64.5
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 1.3e-290 1003.0 816 62.5
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 1.6e-288 996.1 811 63.3
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 1.5e-286 989.6 819 61.5
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 1.9e-286 989.2 813 62.9
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 3.0e-284 981.9 836 61.4
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 4.8e-282 974.5 812 61.9
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 1.1e-281 973.4 813 62.1
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 3.5e-280 968.4 810 61.2
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 1.7e-279 966.1 813 61.1
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 8.6e-279 963.8 815 61.7
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 3.3e-278 961.8 817 61.4
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.6e-277 958.4 813 61.4
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 6.1e-277 957.6 812 61.3
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.0e-276 955.3 813 61.4
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 2.0e-275 952.6 812 60.7
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 3.4e-275 951.8 823 59.8
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 6.6e-271 937.6 813 60.5
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 1.1e-270 936.8 823 59.7
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 4.3e-270 934.9 812 61.0
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 1.2e-269 933.3 817 59.2
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 1.9e-265 919.5 806 58.9
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 7.0e-265 917.5 815 57.5
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 4.6e-264 914.8 805 58.0
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 1.3e-263 913.3 805 57.8
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 3.0e-263 912.1 814 59.2
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 3.9e-263 911.8 815 57.5
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 7.3e-262 907.5 815 57.4
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 4.7e-261 904.8 821 58.1
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 3.1e-260 902.1 826 58.4
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 8.9e-260 900.6 814 58.1
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.6e-259 899.0 817 58.6
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 3.4e-259 898.7 820 57.3
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 9.8e-259 897.1 834 56.5
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 2.2e-258 896.0 877 56.4
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 8.3e-258 894.0 809 57.6
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 1.9e-257 892.9 812 57.3
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 7.0e-257 891.0 803 56.9
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 2.1e-256 889.4 824 56.3
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 4.6e-256 888.3 816 56.5
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 6.0e-256 887.9 825 57.5
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 3.3e-254 882.1 803 57.2
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 3.3e-254 882.1 793 57.5
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.2e-253 880.2 835 57.1
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.6e-253 879.8 736 60.9
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 2.8e-253 879.0 805 57.4
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 1.4e-252 876.7 833 55.0
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 2.3e-252 875.9 803 56.8
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 4.0e-252 875.2 811 56.7
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 1.5e-251 873.2 816 56.9
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 7.5e-251 870.9 829 55.2
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 7.5e-251 870.9 800 56.5
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 2.2e-250 869.4 817 55.8
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 6.0e-248 861.3 810 55.2
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 2.3e-247 859.4 819 55.4
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.8e-244 849.7 781 56.2
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 2.4e-244 849.4 810 57.5
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 5.2e-244 848.2 789 55.8
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 1.5e-243 846.7 817 55.0
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 2.2e-242 842.8 819 54.8
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 1.9e-241 839.7 819 54.5
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 2.4e-241 839.3 814 54.5
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 4.3e-238 828.6 788 56.6
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 8.1e-237 824.3 822 53.8
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 5.6e-230 801.6 823 53.5
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.9e-222 776.5 751 54.9
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 4.0e-220 768.8 876 47.6
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.5e-219 766.9 862 51.7
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 3.8e-218 762.3 617 64.3
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 2.0e-211 740.0 824 51.1
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.4e-211 739.2 625 62.2
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.4e-211 739.2 625 62.2
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 5.9e-203 711.8 622 59.2
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.4e-201 707.2 625 60.3
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.3e-194 684.1 594 60.1
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 2.8e-181 639.8 719 48.5
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 1.1e-177 627.9 770 46.2
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 9.4e-169 598.2 729 46.0
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 3.7e-165 586.3 812 40.9
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 1.4e-159 567.8 799 42.4
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 1.5e-142 511.1 402 64.2
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 1.6e-139 501.1 458 55.7
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 4.4e-134 483.0 554 47.7
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.1e-128 464.2 499 51.9
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 2.7e-123 447.2 330 63.3
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 7.3e-121 439.1 399 59.6
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 1.6e-115 421.4 784 37.0
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.6e-112 410.2 343 59.5
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 8.1e-112 409.1 340 59.7
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 1.1e-108 398.7 782 36.3
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.0e-102 377.9 399 51.6
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 8.2e-96 355.9 752 33.1
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 2.6e-86 324.3 484 43.4
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.2e-85 321.2 475 41.5
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 9.4e-84 315.8 277 57.8
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 1.5e-73 282.0 902 29.4
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 1.7e-72 278.5 241 57.7
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.2e-69 268.1 296 49.7
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.1e-65 255.8 183 63.4
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 9.7e-65 252.7 333 44.1
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 7.0e-63 246.5 381 42.5
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 3.2e-60 237.7 309 45.3
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.3e-56 225.7 191 58.6
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 4.2e-52 210.7 144 66.0
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 5.7e-49 200.3 230 45.7
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 8.9e-42 176.4 181 53.0
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.2e-41 176.0 159 54.7
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 2.0e-41 175.3 233 49.4
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.1e-35 155.2 197 47.2
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 3.6e-35 154.5 214 40.7
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.0e-33 148.7 245 36.3
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.4e-33 147.9 170 48.8
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.2e-32 145.2 158 48.7
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 5.8e-25 120.6 146 46.6
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 1.4e-23 115.9 73 82.2
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 8.6e-21 106.7 72 76.4
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 2.8e-19 101.7 762 22.3
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-15 89.0 108 44.4
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 1.1e-07 63.2 326 23.3
C09p19940 Brassica napus HOM05D001640 ORTHO05D006644 3.5e-06 58.2 37 83.8


User provided reference genes

Program Settings