Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 7.7e-214 746.9 383 100.0
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 1.3e-208 729.6 383 97.9
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 1.3e-208 729.6 383 98.2
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 1.3e-208 729.6 383 97.9
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 4.0e-202 708.0 383 94.8
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 5.4e-199 697.6 383 93.0
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.7e-197 692.6 383 92.7
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 3.9e-197 691.4 384 93.0
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 5.0e-197 691.0 383 90.9
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 1.1e-196 689.9 383 93.7
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 1.5e-196 689.5 383 92.4
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 2.5e-196 688.7 383 91.9
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 5.6e-196 687.6 384 92.4
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 2.8e-195 685.3 384 91.9
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 6.2e-195 684.1 384 91.9
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 8.0e-195 683.7 380 92.6
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 4.0e-194 681.4 383 91.4
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.9e-191 672.5 384 90.9
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.9e-191 672.5 384 90.9
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 3.2e-191 671.8 385 91.4
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 3.2e-191 671.8 385 91.4
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 1.9e-180 636.0 384 87.2
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 5.2e-178 627.9 377 84.6
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 1.5e-164 583.2 375 80.0
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 2.4e-159 565.8 377 78.5
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 6.0e-158 561.2 377 77.7
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 7.9e-158 560.8 386 77.7
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 2.8e-155 552.4 385 76.4
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 2.8e-155 552.4 380 76.8
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 4.8e-155 551.6 373 77.2
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 8.1e-155 550.8 374 77.3
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 1.1e-154 550.4 383 76.2
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.4e-154 550.1 357 79.0
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 1.4e-154 550.1 384 75.5
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.8e-154 549.7 357 79.0
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.8e-154 549.7 357 79.0
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 1.8e-154 549.7 357 81.0
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 3.1e-154 548.9 354 79.7
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 6.9e-154 547.7 395 74.9
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 6.9e-154 547.7 386 74.9
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 6.9e-154 547.7 369 77.5
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.5e-153 546.6 366 76.8
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 5.8e-153 544.7 365 75.9
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 5.8e-153 544.7 361 77.8
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 3.8e-152 542.0 354 79.1
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 3.8e-152 542.0 369 77.0
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.4e-151 540.0 360 77.8
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 5.5e-151 538.1 378 74.6
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 5.5e-151 538.1 356 79.2
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.2e-150 537.0 355 78.0
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.2e-150 537.0 380 73.4
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.2e-150 537.0 387 73.6
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 2.7e-150 535.8 355 78.0
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 6.0e-150 534.6 380 73.7
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 6.0e-150 534.6 355 78.6
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 6.0e-150 534.6 344 79.4
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 7.9e-150 534.3 324 83.3
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 1.3e-149 533.5 358 77.4
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 1.3e-149 533.5 369 76.2
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 1.3e-149 533.5 386 75.1
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 2.3e-149 532.7 348 80.5
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.3e-149 532.7 375 73.3
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 3.0e-149 532.3 382 74.1
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 3.9e-149 531.9 354 77.4
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.7e-149 531.2 363 76.3
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 6.7e-149 531.2 361 76.5
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 6.7e-149 531.2 379 74.7
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 8.7e-149 530.8 380 74.5
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 8.7e-149 530.8 338 80.5
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.5e-148 530.0 346 78.0
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 1.5e-148 530.0 358 76.8
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.5e-148 530.0 380 73.7
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.9e-148 529.6 361 76.2
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 2.5e-148 529.3 386 72.5
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 2.5e-148 529.3 353 77.3
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 3.3e-148 528.9 348 80.5
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 4.3e-148 528.5 361 75.9
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 4.3e-148 528.5 352 77.6
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 4.3e-148 528.5 352 77.6
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 5.7e-148 528.1 365 74.5
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 7.4e-148 527.7 380 73.7
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.3e-147 526.9 359 74.9
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 1.3e-147 526.9 325 81.5
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.6e-147 526.6 379 75.2
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 2.1e-147 526.2 339 79.1
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 2.8e-147 525.8 351 76.9
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.7e-147 525.4 363 76.0
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.8e-146 523.1 355 77.5
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.4e-146 522.7 352 77.6
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 2.4e-146 522.7 344 77.0
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 4.1e-146 521.9 380 71.8
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.1e-146 521.9 373 74.0
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 4.1e-146 521.9 400 70.2
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 1.2e-145 520.4 368 73.6
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.2e-145 520.4 368 73.6
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 2.6e-145 519.2 380 71.3
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 3.4e-145 518.8 343 78.7
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.4e-145 518.8 373 73.7
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 3.4e-145 518.8 353 76.2
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 3.4e-145 518.8 350 75.7
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 5.8e-145 518.1 366 73.5
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 5.0e-144 515.0 361 74.2
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 6.5e-144 514.6 356 74.7
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 6.5e-144 514.6 376 73.1
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 8.4e-144 514.2 360 74.2
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 1.1e-143 513.8 348 75.9
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 3.2e-143 512.3 350 76.6
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 4.2e-143 511.9 332 77.7
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 7.2e-143 511.1 343 77.6
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 7.2e-143 511.1 365 73.4
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 9.3e-143 510.8 447 63.8
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.1e-142 509.6 365 73.2
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.1e-142 509.6 365 73.2
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 1.3e-141 506.9 363 74.9
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 1.8e-141 506.5 317 81.7
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 1.8e-141 506.5 349 75.6
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 5.1e-141 505.0 359 73.5
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 6.7e-141 504.6 359 73.5
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 8.7e-141 504.2 363 73.0
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 1.9e-140 503.1 371 72.5
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 2.5e-140 502.7 363 73.0
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 2.5e-140 502.7 351 74.9
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 3.3e-140 502.3 364 72.3
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 7.4e-140 501.1 369 71.3
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 7.4e-140 501.1 432 64.4
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.2e-139 499.6 391 68.3
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.8e-139 499.2 369 71.3
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 4.8e-139 498.4 321 79.4
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.2e-137 493.8 347 76.7
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.2e-137 493.8 345 73.9
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 7.7e-137 491.1 382 68.3
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.9e-135 486.5 286 85.7
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 3.2e-135 485.7 437 62.5
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.2e-134 483.8 286 83.9
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 2.7e-134 482.6 321 76.6
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 2.7e-134 482.6 363 70.2
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 2.2e-131 473.0 356 69.4
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 6.9e-130 468.0 299 78.3
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.0e-129 466.5 348 69.5
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.0e-129 466.5 323 73.7
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 1.3e-128 463.8 303 77.6
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 1.3e-128 463.8 343 69.7
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 3.8e-128 462.2 320 75.0
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.5e-128 461.5 321 73.5
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 2.7e-126 456.1 334 70.1
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 3.6e-126 455.7 299 75.9
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.0e-121 439.9 310 75.2
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 3.5e-113 412.5 313 68.1
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 1.8e-106 390.2 322 63.4
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 1.7e-104 383.6 250 78.8
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 2.3e-101 373.2 260 76.5
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 6.8e-101 371.7 268 76.1
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 8.0e-94 348.2 289 63.0
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 6.4e-91 338.6 228 78.1
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 4.1e-74 282.7 310 55.5
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 5.6e-71 272.3 308 51.6
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 4.0e-69 266.2 228 69.3
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 5.8e-68 262.3 203 69.5
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 1.6e-65 254.2 190 72.6
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 1.6e-62 244.2 228 64.9
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 1.6e-62 244.2 228 64.9
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 4.0e-61 239.6 205 62.0
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 6.6e-48 195.7 112 81.2
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 2.1e-41 174.1 159 62.9
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 6.0e-41 172.6 104 83.7
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 3.9e-40 169.9 102 85.3
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 3.9e-40 169.9 102 85.3
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 2.5e-39 167.2 102 84.3
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 2.1e-38 164.1 106 80.2
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 8.1e-38 162.2 98 83.7
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 6.9e-37 159.1 107 75.7
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 1.0e-35 155.2 106 75.5
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 1.1e-31 141.7 284 34.9
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 4.8e-22 109.8 64 84.4
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 1.4e-16 91.7 67 74.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 3.9e-16 90.1 49 89.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 1.8e-13 81.3 61 72.1
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 1.5e-12 78.2 38 94.7
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 1.7e-11 74.7 38 92.1


User provided reference genes

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