Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p68060 Brassica napus HOM05D004285 ORTHO05D005176 7.4e-58 227.3 138 100.0
C09p68120 Brassica napus HOM05D004285 ORTHO05D005176 7.4e-58 227.3 138 100.0
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 3.2e-53 211.8 132 97.7
BcaB08g37222 Brassica carinata HOM05D004285 ORTHO05D005176 7.2e-53 210.7 132 95.5
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 7.2e-53 210.7 132 95.5
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 7.2e-53 210.7 132 95.5
BraA10t44845Z Brassica rapa HOM05D004285 ORTHO05D005176 7.2e-53 210.7 132 95.5
Thhalv10014638m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 4.7e-52 208.0 132 93.2
Sp6g34050 Schrenkiella parvula HOM05D004285 ORTHO05D005176 4.7e-52 208.0 132 93.2
AL6G19650 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 1.0e-51 206.8 132 85.6
Carub.0006s0781 Capsella rubella HOM05D004285 ORTHO05D005176 1.0e-51 206.8 132 92.4
AT5G09260 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 2.3e-51 205.7 132 84.8
Aa31LG3G17740 Aethionema arabicum HOM05D004285 ORTHO05D005176 5.2e-51 204.5 132 90.9
Aa31LG1G18000 Aethionema arabicum HOM05D004285 ORTHO05D005176 2.0e-50 202.6 129 86.8
THA.LOC104819347 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 5.7e-50 201.1 128 92.2
Carub.0008s2465 Capsella rubella HOM05D004285 ORTHO05D005176 9.7e-50 200.3 129 84.5
THA.LOC104818421 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 9.7e-50 200.3 128 92.2
AT5G63880 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 1.3e-49 199.9 129 84.5
BcaB02g09769 Brassica carinata HOM05D004285 ORTHO05D005176 1.3e-49 199.9 129 85.3
AL8G41110 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 2.2e-49 199.1 129 90.7
CARHR277780 Cardamine hirsuta HOM05D004285 ORTHO05D005176 2.2e-49 199.1 129 83.7
BcaC01g02639 Brassica carinata HOM05D004285 ORTHO05D005176 2.8e-49 198.7 129 84.5
C03p62560 Brassica napus HOM05D004285 ORTHO05D005176 2.8e-49 198.7 129 84.5
BolC3t18513H Brassica oleracea HOM05D004285 ORTHO05D005176 2.8e-49 198.7 129 84.5
Sp2g26940 Schrenkiella parvula HOM05D004285 ORTHO05D005176 2.8e-49 198.7 128 85.2
BraA06t25999Z Brassica rapa HOM05D004285 ORTHO05D005176 6.3e-49 197.6 129 83.7
Thhalv10004899m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 8.2e-49 197.2 129 83.7
A06p30500 Brassica napus HOM05D004285 ORTHO05D005176 1.1e-48 196.8 129 83.7
BcaNung04632 Brassica carinata HOM05D004285 ORTHO05D005176 2.4e-48 195.7 129 82.9
BcaNung04637 Brassica carinata HOM05D004285 ORTHO05D005176 2.4e-48 195.7 129 82.9
Cc03_g16000 Coffea canephora HOM05D004285 ORTHO05D005176 7.0e-48 194.1 132 79.5
SGA_v2.0_scaffold12G06217 Striga asiatica HOM05D004285 ORTHO05D005176 4.5e-47 191.4 132 77.3
Thecc.01G137100 Theobroma cacao HOM05D004285 ORTHO05D005176 5.9e-47 191.0 128 81.2
Prupe.4G274300 Prunus persica HOM05D004285 ORTHO05D005176 7.7e-47 190.7 128 81.2
MSTRG.22052 Avicennia marina HOM05D004285 ORTHO05D005176 1.0e-46 190.3 132 76.5
HanXRQChr09g0241311 Helianthus annuus HOM05D004285 ORTHO05D005176 1.0e-46 190.3 132 76.5
Aqoxy6G00309 Aquilegia oxysepala HOM05D004285 ORTHO05D005176 1.3e-46 189.9 128 79.7
MBI04_g38139_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 1.3e-46 189.9 132 78.0
Sabra05G0055600 Salix brachista HOM05D004285 ORTHO05D005176 1.3e-46 189.9 132 78.8
Cpa.g.sc37.8 Carica papaya HOM05D004285 ORTHO05D005176 1.7e-46 189.5 128 82.0
Cfa002202 Carpinus fangiana HOM05D004285 ORTHO05D005176 1.7e-46 189.5 132 78.0
Nitab4.5_0000668g0170 Nicotiana tabacum HOM05D004285 ORTHO05D005176 1.7e-46 189.5 132 77.3
Nitab4.5_0009744g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 1.7e-46 189.5 132 77.3
Peaxi162Scf00169g00092 Petunia axillaris HOM05D004285 ORTHO05D005176 1.7e-46 189.5 132 77.3
Potri.005G067700 Populus trichocarpa HOM05D004285 ORTHO05D005176 1.7e-46 189.5 132 78.8
PGR102G2430 Punica granatum HOM05D004285 ORTHO05D005176 1.7e-46 189.5 128 79.7
RcHm_v2.0_Chr4g0406031 Rosa chinensis HOM05D004285 ORTHO05D005176 1.7e-46 189.5 133 76.7
CiPaw.03G117900 Carya illinoinensis HOM05D004285 ORTHO05D005176 2.9e-46 188.7 128 78.9
DCAR_001476 Daucus carota HOM05D004285 ORTHO05D005176 2.9e-46 188.7 132 79.5
Gohir.A05G382800 Gossypium hirsutum HOM05D004285 ORTHO05D005176 2.9e-46 188.7 128 79.7
Gohir.D04G032400 Gossypium hirsutum HOM05D004285 ORTHO05D005176 2.9e-46 188.7 128 79.7
Gorai.012G036800 Gossypium raimondii HOM05D004285 ORTHO05D005176 2.9e-46 188.7 128 79.7
MD15G1135100 Malus domestica HOM05D004285 ORTHO05D005176 2.9e-46 188.7 128 79.7
EL10Ac8g20044 Beta vulgaris HOM05D004285 ORTHO05D005176 3.8e-46 188.3 132 76.5
AUR62012692 Chenopodium quinoa HOM05D004285 ORTHO05D005176 5.0e-46 188.0 132 77.3
AUR62021963 Chenopodium quinoa HOM05D004285 ORTHO05D005176 5.0e-46 188.0 132 77.3
Duzib187G0355 Durio zibethinus HOM05D004285 ORTHO05D005176 5.0e-46 188.0 132 78.0
FvH4_4g10490 Fragaria vesca HOM05D004285 ORTHO05D005176 5.0e-46 188.0 128 79.7
TWI79G0936 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 5.0e-46 188.0 132 77.3
Dinv12984 Davidia involucrata HOM05D004285 ORTHO05D005176 6.5e-46 187.6 132 75.0
Oeu050306.1 Olea europaea HOM05D004285 ORTHO05D005176 6.5e-46 187.6 132 75.0
Potri.007G101500 Populus trichocarpa HOM05D004285 ORTHO05D005176 8.5e-46 187.2 132 78.0
Hund21406 Selenicereus undatus HOM05D004285 ORTHO05D005176 8.5e-46 187.2 132 75.8
TAR628G0040 Trochodendron aralioides HOM05D004285 ORTHO05D005176 8.5e-46 187.2 132 75.8
GSVIVG01029745001 Vitis vinifera HOM05D004285 ORTHO05D005176 8.5e-46 187.2 132 76.5
Haze_25379 Corylus avellana HOM05D004285 ORTHO05D005176 1.1e-45 186.8 132 76.5
FAN22G0010 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.1e-45 186.8 128 78.9
FAN12G0473 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.9e-45 186.0 128 78.9
ATR0706G129 Amborella trichopoda HOM05D004285 ORTHO05D005176 3.2e-45 185.3 132 74.2
ECA234G4310 Erigeron canadensis HOM05D004285 ORTHO05D005176 3.2e-45 185.3 128 77.3
Sopen12g032480 Solanum pennellii HOM05D004285 ORTHO05D005176 3.2e-45 185.3 132 75.8
CAN.G566.38 Capsicum annuum HOM05D004285 ORTHO05D005176 4.2e-45 184.9 132 83.3
Ciclev10002389m.g Citrus clementina HOM05D004285 ORTHO05D005176 4.2e-45 184.9 128 78.1
Eucgr.H05139 Eucalyptus grandis HOM05D004285 ORTHO05D005176 4.2e-45 184.9 127 78.0
PSO675G1889 Papaver somniferum HOM05D004285 ORTHO05D005176 4.2e-45 184.9 129 77.5
QL10p041258 Quercus lobata HOM05D004285 ORTHO05D005176 4.2e-45 184.9 132 75.8
QL10p041526 Quercus lobata HOM05D004285 ORTHO05D005176 4.2e-45 184.9 132 75.8
Sabra07G0083700 Salix brachista HOM05D004285 ORTHO05D005176 4.2e-45 184.9 132 76.5
arahy.Tifrunner.gnm1.ann1.054DCV Arachis hypogaea HOM05D004285 ORTHO05D005176 5.5e-45 184.5 132 78.8
arahy.Tifrunner.gnm1.ann1.GQS5IM Arachis hypogaea HOM05D004285 ORTHO05D005176 5.5e-45 184.5 132 78.8
Sed0015518 Sechium edule HOM05D004285 ORTHO05D005176 5.5e-45 184.5 132 72.7
Solyc12g096650.2 Solanum lycopersicum HOM05D004285 ORTHO05D005176 5.5e-45 184.5 132 83.3
CsaV3_4G030940 Cucumis sativus L. HOM05D004285 ORTHO05D005176 7.2e-45 184.1 132 72.7
Phvul.009G154500 Phaseolus vulgaris HOM05D004285 ORTHO05D005176 7.2e-45 184.1 132 73.5
TAR376G0205 Trochodendron aralioides HOM05D004285 ORTHO05D005176 7.2e-45 184.1 132 75.0
VMungo1309G0657 Vigna mungo HOM05D004285 ORTHO05D005176 7.2e-45 184.1 132 73.5
Atru.chr4.994 Acer truncatum HOM05D004285 ORTHO05D005176 9.4e-45 183.7 128 75.8
Manes.06G003800 Manihot esculenta HOM05D004285 ORTHO05D005176 9.4e-45 183.7 132 74.2
unitig_736.g22477 Utricularia gibba HOM05D004285 ORTHO05D005176 9.4e-45 183.7 132 74.2
Lj4g0011662 Lotus japonicus HOM05D004285 ORTHO05D005176 1.2e-44 183.3 132 72.7
CANSAT80G1716 Cannabis sativa HOM05D004285 ORTHO05D005176 1.6e-44 183.0 132 74.2
CiPaw.04G079800 Carya illinoinensis HOM05D004285 ORTHO05D005176 1.6e-44 183.0 132 83.3
MELO3C008970.2 Cucumis melo HOM05D004285 ORTHO05D005176 2.1e-44 182.6 132 72.0
Glyma.04G210200 Glycine max HOM05D004285 ORTHO05D005176 2.1e-44 182.6 132 72.7
Glyma.06G155800 Glycine max HOM05D004285 ORTHO05D005176 2.1e-44 182.6 132 72.7
Lalb_Chr08g0238191 Lupinus albus HOM05D004285 ORTHO05D005176 2.1e-44 182.6 132 72.7
PSO407G0164 Papaver somniferum HOM05D004285 ORTHO05D005176 2.1e-44 182.6 129 76.0
Duzib264G0533 Durio zibethinus HOM05D004285 ORTHO05D005176 2.7e-44 182.2 128 77.3
Nn5g28435 Nelumbo nucifera HOM05D004285 ORTHO05D005176 2.7e-44 182.2 132 80.3
PSO170G3147 Papaver somniferum HOM05D004285 ORTHO05D005176 2.7e-44 182.2 129 76.7
Psat5g059640 Pisum sativum HOM05D004285 ORTHO05D005176 2.7e-44 182.2 132 72.7
TPR.G33552 Trifolium pratense HOM05D004285 ORTHO05D005176 3.6e-44 181.8 132 72.7
FAN10G2762 Fragaria x ananassa HOM05D004285 ORTHO05D005176 4.7e-44 181.4 128 86.7
Lalb_Chr11g0068611 Lupinus albus HOM05D004285 ORTHO05D005176 8.0e-44 180.6 128 74.2
Sc03g0010160 Simmondsia chinensis HOM05D004285 ORTHO05D005176 8.0e-44 180.6 128 74.2
Ca_16982_v3 Cicer arietinum L. HOM05D004285 ORTHO05D005176 1.0e-43 180.3 132 71.2
Lj1g0004585 Lotus japonicus HOM05D004285 ORTHO05D005176 1.8e-43 179.5 128 73.4
HPP92_022156 Vanilla planifolia HOM05D004285 ORTHO05D005176 1.8e-43 179.5 132 73.5
vmacro18460 Vaccinium macrocarpon HOM05D004285 ORTHO05D005176 3.0e-43 178.7 132 80.3
FAN06G1556 Fragaria x ananassa HOM05D004285 ORTHO05D005176 4.0e-43 178.3 128 86.7
TWI75G0304 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 5.2e-43 177.9 132 72.7
CSS0033426 Camellia sinensis var. sinensis HOM05D004285 ORTHO05D005176 8.8e-43 177.2 132 71.2
FvH4_7g03820 Fragaria vesca HOM05D004285 ORTHO05D005176 1.2e-42 176.8 128 85.9
Actinidia20030 Actinidia chinensis HOM05D004285 ORTHO05D005176 1.5e-42 176.4 128 74.2
CDE08G1470 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 9.8e-42 173.7 132 69.7
Lsat_1_v5_gn_4_38601 Lactuca sativa HOM05D004285 ORTHO05D005176 2.2e-41 172.6 132 79.5
Rhsim08G0027500 Rhododendron simsii HOM05D004285 ORTHO05D005176 2.8e-41 172.2 132 78.0
VMungo1309G3080 Vigna mungo HOM05D004285 ORTHO05D005176 3.7e-41 171.8 129 71.3
Zm00001eb183830 Zea mays HOM05D004285 ORTHO05D005176 8.3e-41 170.6 132 73.5
Zm00001eb246180 Zea mays HOM05D004285 ORTHO05D005176 8.3e-41 170.6 132 72.7
Medtr3g096680 Medicago truncatula HOM05D004285 ORTHO05D005176 1.4e-40 169.9 155 62.6
CDE02G0727 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 1.8e-40 169.5 132 67.4
SMO232G0091 Selaginella moellendorffii HOM05D004285 ORTHO05D005176 3.1e-40 168.7 132 65.9
TPR.G24222 Trifolium pratense HOM05D004285 ORTHO05D005176 5.4e-40 167.9 124 71.8
Os02g0596500 Oryza sativa ssp. japonica HOM05D004285 ORTHO05D005176 7.7e-39 164.1 132 73.5
Nitab4.5_0008205g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 2.2e-38 162.5 132 69.7
CAN.G607.7 Capsicum annuum HOM05D004285 ORTHO05D005176 2.9e-38 162.2 158 60.1
AagrBONN_evm.TU.Sc2ySwM_228.3779 Anthoceros agrestis HOM05D004285 ORTHO05D005176 4.0e-35 151.8 133 60.2
Mapoly0073s0065 Marchantia polymorpha HOM05D004285 ORTHO05D005176 4.4e-34 148.3 132 56.8
CARHR204160 Cardamine hirsuta HOM05D004285 ORTHO05D005176 2.2e-33 146.0 98 82.7
Peaxi162Scf01205g00036 Petunia axillaris HOM05D004285 ORTHO05D005176 1.8e-32 142.9 132 61.4
AagrBONN_evm.TU.Sc2ySwM_117.2591 Anthoceros agrestis HOM05D004285 ORTHO05D005176 5.0e-30 134.8 133 54.9
Oeu022909.3 Olea europaea HOM05D004285 ORTHO05D005176 8.6e-30 134.0 99 71.7
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 7.2e-29 131.0 99 70.7
Lj2A489T51 Lonicera japonica HOM05D004285 ORTHO05D005176 1.6e-28 129.8 102 67.6
FAN12G2135 Fragaria x ananassa HOM05D004285 ORTHO05D005176 2.8e-28 129.0 97 73.2
Nitab4.5_0000013g0100 Nicotiana tabacum HOM05D004285 ORTHO05D005176 2.8e-28 129.0 102 69.6
MBI18_g28836_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 4.7e-28 128.3 99 70.7
Pp3c2_32100 Physcomitrium patens HOM05D004285 ORTHO05D005176 6.1e-28 127.9 130 62.3
MBI04_g07580_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 2.3e-27 125.9 103 71.8
CBR_g70720 Chara braunii HOM05D004285 ORTHO05D005176 4.0e-27 125.2 134 50.0
AL697U10010 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 1.5e-26 123.2 85 78.8
COL.COLO4_35812 Corchorus olitorius HOM05D003519 ORTHO05D004443 5.7e-26 121.3 87 74.7
ClCG04G001580 Citrullus lanatus HOM05D004285 ORTHO05D005176 2.2e-25 119.4 102 64.7
Migut.G00927 Erythranthe guttata HOM05D004285 ORTHO05D005176 3.7e-25 118.6 85 75.3
FAN03G0757 Fragaria x ananassa HOM05D004285 ORTHO05D005176 3.5e-23 112.1 131 63.4
Aa31LG4G3130 Aethionema arabicum HOM05D004285 ORTHO05D005176 1.1e-21 107.1 62 90.3
AL1G38920 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 2.3e-19 99.4 73 74.0
FAN07G1696 Fragaria x ananassa HOM05D004285 ORTHO05D005176 2.2e-17 92.8 55 87.3
Cre13.g589700 Chlamydomonas reinhardtii HOM05D004285 ORTHO05D005176 1.4e-16 90.1 126 40.5
AagrBONN_evm.TU.Sc2ySwM_344.1024 Anthoceros agrestis HOM05D004285 ORTHO05D005176 5.4e-16 88.2 87 57.5
C09p67470 Brassica napus HOM05D004285 ORTHO05D005176 1.9e-13 79.7 47 89.4
BolC9t59508H Brassica oleracea HOM05D004285 ORTHO05D005176 2.5e-13 79.3 44 95.5
MCO14G274 Micromonas commoda HOM05D004285 ORTHO05D005176 2.6e-10 69.3 119 35.3
Haze_26675 Corylus avellana HOM05D004285 ORTHO05D005176 4.4e-10 68.6 133 32.3
PRCOL_00005830 Prasinoderma coloniale HOM05D004285 ORTHO05D005176 1.7e-09 66.6 119 36.1
CARHR204170 Cardamine hirsuta HOM05D004285 ORTHO05D005176 2.2e-09 66.2 35 91.4
C09p09560 Brassica napus HOM05D004285 ORTHO05D005176 1.2e-07 60.5 41 73.2
A08p30650 Brassica napus HOM05D004285 ORTHO05D005176 2.7e-07 59.3 53 62.3
Cfa026504 Carpinus fangiana HOM05D004285 ORTHO05D005176 4.6e-07 58.5 119 32.8
A06p05780 Brassica napus HOM05D004285 ORTHO05D005176 5.1e-06 55.1 55 56.4


User provided reference genes

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