Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p67470 Brassica napus HOM05D004285 ORTHO05D005176 1.4e-55 219.5 129 100.0
BolC9t59508H Brassica oleracea HOM05D004285 ORTHO05D005176 2.4e-50 202.2 122 97.5
BcaB08g37222 Brassica carinata HOM05D004285 ORTHO05D005176 5.7e-28 127.9 124 70.2
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 6.3e-27 124.4 131 66.4
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 1.4e-26 123.2 131 61.1
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 1.5e-23 113.2 148 52.7
Thhalv10014638m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 1.6e-22 109.8 124 61.3
AL6G19650 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 2.8e-22 109.0 124 56.5
Carub.0006s0781 Capsella rubella HOM05D004285 ORTHO05D005176 2.8e-22 109.0 124 57.3
BraA10t44845Z Brassica rapa HOM05D004285 ORTHO05D005176 4.0e-21 105.1 121 57.0
Sp6g34050 Schrenkiella parvula HOM05D004285 ORTHO05D005176 4.0e-21 105.1 124 62.1
vmacro18460 Vaccinium macrocarpon HOM05D004285 ORTHO05D005176 5.2e-21 104.8 71 77.5
Aa31LG4G3130 Aethionema arabicum HOM05D004285 ORTHO05D005176 3.4e-20 102.1 97 66.0
CARHR204160 Cardamine hirsuta HOM05D004285 ORTHO05D005176 6.4e-19 97.8 124 54.0
THA.LOC104819347 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 1.1e-18 97.1 119 52.1
A06p30500 Brassica napus HOM05D004285 ORTHO05D005176 5.4e-18 94.7 130 52.3
Aa31LG3G17740 Aethionema arabicum HOM05D004285 ORTHO05D005176 7.0e-18 94.4 101 59.4
C03p62560 Brassica napus HOM05D004285 ORTHO05D005176 7.0e-18 94.4 119 57.1
BolC3t18513H Brassica oleracea HOM05D004285 ORTHO05D005176 7.0e-18 94.4 119 57.1
Cpa.g.sc37.8 Carica papaya HOM05D004285 ORTHO05D005176 7.0e-18 94.4 122 50.8
Aa31LG1G18000 Aethionema arabicum HOM05D004285 ORTHO05D005176 1.2e-17 93.6 119 53.8
BcaC01g02639 Brassica carinata HOM05D004285 ORTHO05D005176 1.2e-17 93.6 128 53.1
AT5G09260 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 2.0e-17 92.8 91 63.7
Cc03_g16000 Coffea canephora HOM05D004285 ORTHO05D005176 3.5e-17 92.0 99 56.6
AT5G63880 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 7.8e-17 90.9 131 48.1
AL8G41110 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 1.3e-16 90.1 131 47.3
BcaB02g09769 Brassica carinata HOM05D004285 ORTHO05D005176 1.3e-16 90.1 128 49.2
Atru.chr4.994 Acer truncatum HOM05D004285 ORTHO05D005176 3.0e-16 89.0 122 53.3
AUR62012692 Chenopodium quinoa HOM05D004285 ORTHO05D005176 3.0e-16 89.0 122 56.6
AUR62021963 Chenopodium quinoa HOM05D004285 ORTHO05D005176 3.0e-16 89.0 122 56.6
Lsat_1_v5_gn_4_38601 Lactuca sativa HOM05D004285 ORTHO05D005176 3.9e-16 88.6 107 54.2
THA.LOC104818421 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 3.9e-16 88.6 101 56.4
C09p09560 Brassica napus HOM05D004285 ORTHO05D005176 5.0e-16 88.2 93 55.9
FAN06G1556 Fragaria x ananassa HOM05D004285 ORTHO05D005176 5.0e-16 88.2 101 53.5
arahy.Tifrunner.gnm1.ann1.GQS5IM Arachis hypogaea HOM05D004285 ORTHO05D005176 6.6e-16 87.8 127 46.5
EL10Ac8g20044 Beta vulgaris HOM05D004285 ORTHO05D005176 8.6e-16 87.4 97 54.6
CARHR277780 Cardamine hirsuta HOM05D004285 ORTHO05D005176 8.6e-16 87.4 122 47.5
Nitab4.5_0000668g0170 Nicotiana tabacum HOM05D004285 ORTHO05D005176 8.6e-16 87.4 99 54.5
TWI79G0936 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 8.6e-16 87.4 122 45.9
MELO3C008970.2 Cucumis melo HOM05D004285 ORTHO05D005176 1.1e-15 87.0 97 54.6
Lalb_Chr11g0068611 Lupinus albus HOM05D004285 ORTHO05D005176 1.1e-15 87.0 123 51.2
Peaxi162Scf00169g00092 Petunia axillaris HOM05D004285 ORTHO05D005176 1.1e-15 87.0 97 54.6
Thhalv10004899m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 1.5e-15 86.7 119 50.4
FvH4_7g03820 Fragaria vesca HOM05D004285 ORTHO05D005176 1.5e-15 86.7 101 52.5
TPR.G24222 Trifolium pratense HOM05D004285 ORTHO05D005176 1.5e-15 86.7 93 57.0
Carub.0008s2465 Capsella rubella HOM05D004285 ORTHO05D005176 1.9e-15 86.3 92 58.7
CSS0033426 Camellia sinensis var. sinensis HOM05D004285 ORTHO05D005176 2.5e-15 85.9 99 54.5
CsaV3_4G030940 Cucumis sativus L. HOM05D004285 ORTHO05D005176 2.5e-15 85.9 97 53.6
TWI75G0304 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 2.5e-15 85.9 122 45.9
VMungo1309G0657 Vigna mungo HOM05D004285 ORTHO05D005176 2.5e-15 85.9 129 46.5
FAN03G0757 Fragaria x ananassa HOM05D004285 ORTHO05D005176 3.3e-15 85.5 101 52.5
TPR.G33552 Trifolium pratense HOM05D004285 ORTHO05D005176 3.3e-15 85.5 100 52.0
ATR0706G129 Amborella trichopoda HOM05D004285 ORTHO05D005176 4.3e-15 85.1 101 51.5
MSTRG.22052 Avicennia marina HOM05D004285 ORTHO05D005176 4.3e-15 85.1 99 50.5
Lj4g0011662 Lotus japonicus HOM05D004285 ORTHO05D005176 4.3e-15 85.1 91 56.0
arahy.Tifrunner.gnm1.ann1.054DCV Arachis hypogaea HOM05D004285 ORTHO05D005176 5.6e-15 84.7 123 47.2
Ca_16982_v3 Cicer arietinum L. HOM05D004285 ORTHO05D005176 5.6e-15 84.7 100 52.0
COL.COLO4_35812 Corchorus olitorius HOM05D003519 ORTHO05D004443 5.6e-15 84.7 91 57.1
Nitab4.5_0009744g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 5.6e-15 84.7 93 54.8
DCAR_001476 Daucus carota HOM05D004285 ORTHO05D005176 7.3e-15 84.3 73 69.9
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 7.3e-15 84.3 73 69.9
Dinv12984 Davidia involucrata HOM05D004285 ORTHO05D005176 7.3e-15 84.3 69 71.0
ECA234G4310 Erigeron canadensis HOM05D004285 ORTHO05D005176 7.3e-15 84.3 99 51.5
Lalb_Chr08g0238191 Lupinus albus HOM05D004285 ORTHO05D005176 7.3e-15 84.3 123 50.4
Nitab4.5_0000013g0100 Nicotiana tabacum HOM05D004285 ORTHO05D005176 7.3e-15 84.3 97 53.6
Phvul.009G154500 Phaseolus vulgaris HOM05D004285 ORTHO05D005176 7.3e-15 84.3 123 46.3
Sp2g26940 Schrenkiella parvula HOM05D004285 ORTHO05D005176 7.3e-15 84.3 97 55.7
Hund21406 Selenicereus undatus HOM05D004285 ORTHO05D005176 7.3e-15 84.3 97 54.6
Thecc.01G137100 Theobroma cacao HOM05D004285 ORTHO05D005176 7.3e-15 84.3 98 53.1
Glyma.04G210200 Glycine max HOM05D004285 ORTHO05D005176 9.5e-15 84.0 73 69.9
Glyma.06G155800 Glycine max HOM05D004285 ORTHO05D005176 9.5e-15 84.0 73 69.9
Oeu022909.3 Olea europaea HOM05D004285 ORTHO05D005176 9.5e-15 84.0 99 51.5
Oeu050306.1 Olea europaea HOM05D004285 ORTHO05D005176 9.5e-15 84.0 99 51.5
Psat5g059640 Pisum sativum HOM05D004285 ORTHO05D005176 9.5e-15 84.0 91 56.0
Sed0015518 Sechium edule HOM05D004285 ORTHO05D005176 9.5e-15 84.0 97 52.6
BraA06t25999Z Brassica rapa HOM05D004285 ORTHO05D005176 1.2e-14 83.6 150 44.7
CANSAT80G1716 Cannabis sativa HOM05D004285 ORTHO05D005176 1.2e-14 83.6 92 55.4
CAN.G566.38 Capsicum annuum HOM05D004285 ORTHO05D005176 1.6e-14 83.2 96 53.1
CAN.G607.7 Capsicum annuum HOM05D004285 ORTHO05D005176 1.6e-14 83.2 73 64.4
HanXRQChr09g0241311 Helianthus annuus HOM05D004285 ORTHO05D005176 1.6e-14 83.2 51 86.3
Lj1g0004585 Lotus japonicus HOM05D004285 ORTHO05D005176 1.6e-14 83.2 123 45.5
MBI04_g38139_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 1.6e-14 83.2 69 71.0
SGA_v2.0_scaffold12G06217 Striga asiatica HOM05D004285 ORTHO05D005176 1.6e-14 83.2 102 51.0
VMungo1309G3080 Vigna mungo HOM05D004285 ORTHO05D005176 1.6e-14 83.2 100 52.0
GSVIVG01029745001 Vitis vinifera HOM05D004285 ORTHO05D005176 1.6e-14 83.2 116 45.7
Actinidia20030 Actinidia chinensis HOM05D004285 ORTHO05D005176 2.1e-14 82.8 69 71.0
ClCG04G001580 Citrullus lanatus HOM05D004285 ORTHO05D005176 2.1e-14 82.8 97 52.6
Gorai.012G036800 Gossypium raimondii HOM05D004285 ORTHO05D005176 2.1e-14 82.8 97 52.6
Solyc12g096650.2 Solanum lycopersicum HOM05D004285 ORTHO05D005176 2.1e-14 82.8 99 52.5
Sopen12g032480 Solanum pennellii HOM05D004285 ORTHO05D005176 2.1e-14 82.8 99 52.5
HPP92_022156 Vanilla planifolia HOM05D004285 ORTHO05D005176 2.1e-14 82.8 50 88.0
BcaNung04632 Brassica carinata HOM05D004285 ORTHO05D005176 2.8e-14 82.4 92 56.5
BcaNung04637 Brassica carinata HOM05D004285 ORTHO05D005176 2.8e-14 82.4 92 56.5
FvH4_4g10490 Fragaria vesca HOM05D004285 ORTHO05D005176 2.8e-14 82.4 131 41.2
FAN10G2762 Fragaria x ananassa HOM05D004285 ORTHO05D005176 2.8e-14 82.4 101 51.5
Nitab4.5_0008205g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 2.8e-14 82.4 73 68.5
Rhsim08G0027500 Rhododendron simsii HOM05D004285 ORTHO05D005176 2.8e-14 82.4 73 68.5
Lj2A489T51 Lonicera japonica HOM05D004285 ORTHO05D005176 3.6e-14 82.0 73 67.1
Peaxi162Scf01205g00036 Petunia axillaris HOM05D004285 ORTHO05D005176 3.6e-14 82.0 69 68.1
Gohir.D04G032400 Gossypium hirsutum HOM05D004285 ORTHO05D005176 4.7e-14 81.6 97 52.6
Aqoxy6G00309 Aquilegia oxysepala HOM05D004285 ORTHO05D005176 6.2e-14 81.3 50 86.0
Medtr3g096680 Medicago truncatula HOM05D004285 ORTHO05D005176 8.0e-14 80.9 100 49.0
Potri.005G067700 Populus trichocarpa HOM05D004285 ORTHO05D005176 8.0e-14 80.9 69 69.6
Potri.007G101500 Populus trichocarpa HOM05D004285 ORTHO05D005176 8.0e-14 80.9 69 69.6
Sabra05G0055600 Salix brachista HOM05D004285 ORTHO05D005176 8.0e-14 80.9 69 69.6
CiPaw.04G079800 Carya illinoinensis HOM05D004285 ORTHO05D005176 1.1e-13 80.5 91 51.6
Cfa002202 Carpinus fangiana HOM05D004285 ORTHO05D005176 1.4e-13 80.1 51 82.4
FAN12G2135 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.4e-13 80.1 53 79.2
Sabra07G0083700 Salix brachista HOM05D004285 ORTHO05D005176 1.4e-13 80.1 69 68.1
TAR628G0040 Trochodendron aralioides HOM05D004285 ORTHO05D005176 1.4e-13 80.1 51 82.4
Zm00001eb183830 Zea mays HOM05D004285 ORTHO05D005176 1.4e-13 80.1 99 51.5
Nn5g28435 Nelumbo nucifera HOM05D004285 ORTHO05D005176 1.8e-13 79.7 69 66.7
unitig_736.g22477 Utricularia gibba HOM05D004285 ORTHO05D005176 1.8e-13 79.7 69 66.7
Haze_25379 Corylus avellana HOM05D004285 ORTHO05D005176 2.3e-13 79.3 54 75.9
Duzib187G0355 Durio zibethinus HOM05D004285 ORTHO05D005176 2.3e-13 79.3 51 80.4
Manes.06G003800 Manihot esculenta HOM05D004285 ORTHO05D005176 2.3e-13 79.3 98 53.1
RcHm_v2.0_Chr4g0406031 Rosa chinensis HOM05D004285 ORTHO05D005176 2.3e-13 79.3 123 42.3
TAR376G0205 Trochodendron aralioides HOM05D004285 ORTHO05D005176 2.3e-13 79.3 51 82.4
Zm00001eb246180 Zea mays HOM05D004285 ORTHO05D005176 2.3e-13 79.3 100 50.0
Duzib264G0533 Durio zibethinus HOM05D004285 ORTHO05D005176 3.1e-13 79.0 98 50.0
FAN22G0010 Fragaria x ananassa HOM05D004285 ORTHO05D005176 3.1e-13 79.0 73 65.8
Gohir.A05G382800 Gossypium hirsutum HOM05D004285 ORTHO05D005176 3.1e-13 79.0 69 65.2
PSO170G3147 Papaver somniferum HOM05D004285 ORTHO05D005176 3.1e-13 79.0 89 55.1
PSO675G1889 Papaver somniferum HOM05D004285 ORTHO05D005176 3.1e-13 79.0 89 55.1
MBI18_g28836_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 4.0e-13 78.6 53 77.4
MD15G1135100 Malus domestica HOM05D004285 ORTHO05D005176 4.0e-13 78.6 51 80.4
CDE08G1470 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 5.2e-13 78.2 51 78.4
FAN12G0473 Fragaria x ananassa HOM05D004285 ORTHO05D005176 5.2e-13 78.2 53 77.4
PGR102G2430 Punica granatum HOM05D004285 ORTHO05D005176 5.2e-13 78.2 69 65.2
Os02g0596500 Oryza sativa ssp. japonica HOM05D004285 ORTHO05D005176 6.8e-13 77.8 99 49.5
C09p68060 Brassica napus HOM05D004285 ORTHO05D005176 8.9e-13 77.4 47 89.4
C09p68120 Brassica napus HOM05D004285 ORTHO05D005176 8.9e-13 77.4 47 89.4
Sc03g0010160 Simmondsia chinensis HOM05D004285 ORTHO05D005176 8.9e-13 77.4 69 66.7
PSO407G0164 Papaver somniferum HOM05D004285 ORTHO05D005176 1.2e-12 77.0 89 52.8
Prupe.4G274300 Prunus persica HOM05D004285 ORTHO05D005176 1.2e-12 77.0 101 48.5
QL10p041258 Quercus lobata HOM05D004285 ORTHO05D005176 1.2e-12 77.0 69 63.8
QL10p041526 Quercus lobata HOM05D004285 ORTHO05D005176 1.2e-12 77.0 69 63.8
CiPaw.03G117900 Carya illinoinensis HOM05D004285 ORTHO05D005176 1.5e-12 76.6 69 65.2
CDE02G0727 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 1.5e-12 76.6 51 76.5
BolC9t53867H Brassica oleracea HOM05D004285 ORTHO05D005176 2.0e-12 76.3 75 60.0
Ciclev10002389m.g Citrus clementina HOM05D004285 ORTHO05D005176 2.6e-12 75.9 100 49.0
SMO232G0091 Selaginella moellendorffii HOM05D004285 ORTHO05D005176 5.8e-12 74.7 69 62.3
Pp3c2_32100 Physcomitrium patens HOM05D004285 ORTHO05D005176 3.7e-11 72.0 50 76.0
AagrBONN_evm.TU.Sc2ySwM_228.3779 Anthoceros agrestis HOM05D004285 ORTHO05D005176 8.3e-11 70.9 73 53.4
Mapoly0073s0065 Marchantia polymorpha HOM05D004285 ORTHO05D005176 3.2e-10 68.9 51 66.7
Eucgr.H05139 Eucalyptus grandis HOM05D004285 ORTHO05D005176 5.4e-10 68.2 123 44.7
AagrBONN_evm.TU.Sc2ySwM_117.2591 Anthoceros agrestis HOM05D004285 ORTHO05D005176 1.3e-08 63.5 51 60.8
Cre13.g589700 Chlamydomonas reinhardtii HOM05D004285 ORTHO05D005176 2.3e-08 62.8 65 53.8
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 1.1e-07 60.5 92 46.7
CBR_g70720 Chara braunii HOM05D004285 ORTHO05D005176 3.3e-07 58.9 50 58.0


User provided reference genes

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