Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 1.0e-221 773.1 380 100.0
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 7.7e-190 667.2 380 88.2
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 2.2e-184 649.0 380 85.8
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 9.8e-177 623.6 382 83.5
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 3.7e-176 621.7 381 82.7
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 6.4e-176 620.9 382 83.0
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 3.4e-169 598.6 387 78.3
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 6.4e-168 594.3 388 78.1
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 1.4e-167 593.2 388 78.1
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 1.4e-167 593.2 388 78.1
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 7.0e-167 590.9 383 79.1
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 4.6e-166 588.2 389 77.9
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 3.3e-164 582.0 385 77.4
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 4.0e-162 575.1 383 76.2
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 5.8e-161 571.2 383 76.0
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 5.8e-161 571.2 385 75.8
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 3.2e-159 565.5 379 75.5
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 9.6e-148 527.3 389 69.4
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 1.2e-142 510.4 391 66.0
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.1e-124 450.7 404 57.4
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 2.2e-120 436.4 403 55.3
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 2.5e-119 433.0 386 57.8
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 7.1e-119 431.4 405 55.3
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 9.3e-119 431.0 400 57.8
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 2.7e-118 429.5 390 56.2
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 1.3e-117 427.2 410 54.9
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 1.3e-117 427.2 398 55.3
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 1.8e-117 426.8 406 53.7
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 2.3e-117 426.4 402 54.5
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 1.1e-116 424.1 399 55.9
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 1.9e-116 423.3 383 55.1
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 2.5e-116 422.9 387 54.5
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 2.5e-116 422.9 406 54.4
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 2.5e-116 422.9 404 54.5
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 2.5e-116 422.9 407 55.3
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 4.3e-116 422.2 384 55.7
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 5.7e-116 421.8 384 54.2
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 7.4e-116 421.4 405 54.8
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 9.7e-116 421.0 384 54.7
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 9.7e-116 421.0 376 56.6
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 2.8e-115 419.5 404 54.0
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.1e-114 417.5 400 54.2
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.4e-114 417.2 407 53.1
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 2.4e-114 416.4 382 55.2
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 4.1e-114 415.6 382 54.5
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 9.0e-114 414.5 409 52.8
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 1.5e-113 413.7 400 54.0
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 2.0e-113 413.3 400 52.8
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 2.6e-113 412.9 380 54.2
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 4.5e-113 412.1 404 52.2
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 4.5e-113 412.1 383 54.8
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.0e-112 411.0 407 52.8
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.0e-112 411.0 400 53.5
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 1.3e-112 410.6 384 53.6
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 1.3e-112 410.6 372 56.5
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 1.3e-112 410.6 398 54.3
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 1.7e-112 410.2 405 52.1
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 1.7e-112 410.2 402 53.7
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.9e-112 409.5 399 54.6
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 5.0e-112 408.7 418 53.6
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 6.5e-112 408.3 407 54.1
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 1.1e-111 407.5 400 52.5
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 2.5e-111 406.4 384 53.9
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 2.5e-111 406.4 407 50.9
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 7.2e-111 404.8 384 53.1
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 9.4e-111 404.4 401 53.1
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 9.4e-111 404.4 378 53.7
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 2.7e-110 402.9 396 52.0
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 2.7e-110 402.9 397 53.7
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 2.7e-110 402.9 395 52.9
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 7.9e-110 401.4 402 51.5
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 1.0e-109 401.0 406 51.5
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 2.3e-109 399.8 400 51.5
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 3.0e-109 399.4 409 50.6
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 1.7e-107 393.7 395 52.4
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 3.7e-107 392.5 448 46.9
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 4.8e-107 392.1 401 50.9
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 1.8e-106 390.2 413 48.9
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.8e-106 390.2 396 50.8
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.8e-106 390.2 396 50.8
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 1.5e-105 387.1 397 52.4
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 1.3e-104 384.0 413 48.4
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 1.7e-104 383.6 364 54.4
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 9.4e-103 377.9 386 51.3
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 2.7e-102 376.3 399 51.1
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 2.7e-102 376.3 474 44.9
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.8e-101 373.6 409 48.4
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 1.1e-100 370.9 470 44.5
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 2.2e-99 366.7 405 48.9
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 1.8e-98 363.6 362 52.8
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 3.5e-97 359.4 293 58.7
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 8.5e-96 354.8 398 47.7
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 4.2e-95 352.4 388 47.2
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 5.5e-95 352.1 348 52.3
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 9.4e-95 351.3 409 47.9
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 1.0e-93 347.8 490 45.3
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 1.1e-92 344.4 355 51.0
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 7.4e-92 341.7 405 44.7
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 7.4e-92 341.7 403 43.9
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 3.5e-89 332.8 435 42.1
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 2.2e-88 330.1 401 46.4
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 1.5e-87 327.4 398 46.7
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 2.5e-87 326.6 394 45.4
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 3.6e-86 322.8 398 45.2
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 2.6e-84 316.6 366 47.3
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.4e-82 310.1 298 54.4
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 2.1e-78 297.0 464 36.4
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 2.2e-75 287.0 252 56.0
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.2e-73 281.2 254 55.5
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 1.0e-72 278.1 340 46.8
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 3.4e-68 263.1 457 34.6
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 3.4e-68 263.1 421 35.6
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 9.8e-68 261.5 184 77.2
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 2.2e-67 260.4 201 61.2
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 1.4e-66 257.7 384 37.0
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 9.2e-66 255.0 331 42.3
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 4.7e-62 242.7 347 41.2
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 5.6e-55 219.2 178 59.6
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 1.2e-54 218.0 227 51.1
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.5e-52 211.1 176 56.8
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 3.2e-42 176.8 283 37.8
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 3.2e-42 176.8 283 37.8
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 4.3e-39 166.4 180 47.8
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 5.6e-39 166.0 181 47.5
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 1.3e-32 144.8 152 49.3
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 8.7e-32 142.1 321 30.2
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 4.0e-29 133.3 128 53.1
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 6.9e-29 132.5 120 55.8
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 2.1e-17 94.4 76 55.3
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 7.9e-17 92.4 130 40.8
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 3.9e-16 90.1 89 50.6
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 5.1e-16 89.7 289 27.7
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.8e-06 57.4 102 36.3


User provided reference genes

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