Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p59210 Brassica napus HOM05D023048 ORTHO05D024144 3.3e-92 341.7 167 100.0
C05p08270 Brassica napus HOM05D023048 ORTHO05D024144 3.1e-90 335.1 167 98.8
BolC3t12720H Brassica oleracea HOM05D023048 ORTHO05D024144 1.5e-89 332.8 167 98.2
BcaC05g24809 Brassica carinata HOM05D023048 ORTHO05D024144 9.2e-87 323.6 186 88.7
BraA01t02391Z Brassica rapa HOM05D023048 ORTHO05D024144 4.7e-22 108.6 56 96.4
BcaC06g36575 Brassica carinata HOM05D006688 ORTHO05D008550 1.0e-13 80.9 37 91.9
C07p02720 Brassica napus HOM05D006688 ORTHO05D008550 1.0e-13 80.9 37 91.9
BolC7t40672H Brassica oleracea HOM05D006688 ORTHO05D008550 1.0e-13 80.9 37 91.9
BcaB03g16729 Brassica carinata HOM05D006688 ORTHO05D008550 2.3e-13 79.7 37 89.2
A07p01330 Brassica napus HOM05D006688 ORTHO05D008550 2.0e-12 76.6 37 89.2
BraA07t27924Z Brassica rapa HOM05D006688 ORTHO05D008550 2.0e-12 76.6 37 89.2
AT2G19430 Arabidopsis thaliana HOM05D006688 ORTHO05D008550 6.3e-11 71.6 43 74.4
AL3G48850 Arabidopsis lyrata HOM05D006688 ORTHO05D008550 1.1e-10 70.9 43 74.4
Carub.0003s3371 Capsella rubella HOM05D006688 ORTHO05D008550 5.3e-10 68.6 43 69.8
CARHR109870 Cardamine hirsuta HOM05D006688 ORTHO05D008550 1.6e-09 67.0 41 70.7
Sp3g32810 Schrenkiella parvula HOM05D006688 ORTHO05D008550 1.6e-09 67.0 43 65.1
Thhalv10022744m.g Eutrema salsugineum HOM05D006688 ORTHO05D008550 3.5e-09 65.9 43 67.4
PGR004G0903 Punica granatum HOM05D006688 ORTHO05D008550 4.5e-09 65.5 40 57.5
Cpa.g.sc28.142 Carica papaya HOM05D006688 ORTHO05D008550 1.3e-08 63.9 44 59.1
Aa31LG8G16440 Aethionema arabicum HOM05D006688 ORTHO05D008550 2.2e-08 63.2 43 65.1
Prupe.7G205900 Prunus persica HOM05D006688 ORTHO05D008550 5.0e-08 62.0 46 56.5
Atru.chr7.1629 Acer truncatum HOM05D006688 ORTHO05D008550 6.5e-08 61.6 43 55.8
THA.LOC104814631 Tarenaya hassleriana HOM05D006688 ORTHO05D008550 6.5e-08 61.6 43 62.8
Sabra07G0001100 Salix brachista HOM05D006688 ORTHO05D008550 8.5e-08 61.2 43 53.5
Haze_25940 Corylus avellana HOM05D006688 ORTHO05D008550 1.1e-07 60.8 43 55.8
Duzib150G1545 Durio zibethinus HOM05D006688 ORTHO05D000625 1.1e-07 60.8 46 50.0
Hund06662 Selenicereus undatus HOM05D006688 ORTHO05D008550 1.1e-07 60.8 52 44.2
Sc08g0008600 Simmondsia chinensis HOM05D006688 ORTHO05D008550 1.1e-07 60.8 46 54.3
Thecc.09G085200 Theobroma cacao HOM05D006688 ORTHO05D008550 1.1e-07 60.8 46 50.0
GSVIVG01015172001 Vitis vinifera HOM05D006688 ORTHO05D008550 1.1e-07 60.8 46 52.2
EL10Ac8g19177 Beta vulgaris HOM05D006688 ORTHO05D008550 1.5e-07 60.5 52 46.2
MD02G1082800 Malus domestica HOM05D006688 ORTHO05D008550 1.5e-07 60.5 46 52.2
CSS0016517 Camellia sinensis var. sinensis HOM05D006688 ORTHO05D008550 1.9e-07 60.1 46 50.0
Cfa003056 Carpinus fangiana HOM05D006688 ORTHO05D000625 1.9e-07 60.1 43 55.8
SalBow1G2294 Salvia bowleyana HOM05D006688 ORTHO05D008550 1.9e-07 60.1 44 54.5
vmacro06303 Vaccinium macrocarpon HOM05D006688 ORTHO05D008550 2.5e-07 59.7 46 47.8
Phvul.003G134700 Phaseolus vulgaris HOM05D006688 ORTHO05D008550 4.2e-07 58.9 43 55.8
Potri.007G001500 Populus trichocarpa HOM05D006688 ORTHO05D008550 4.2e-07 58.9 43 48.8
CiPaw.03G212300 Carya illinoinensis HOM05D006688 ORTHO05D008550 5.5e-07 58.5 44 54.5
TAR636G2732 Trochodendron aralioides HOM05D006688 ORTHO05D008550 5.5e-07 58.5 46 50.0
VMungo1215G1360 Vigna mungo HOM05D006688 ORTHO05D008550 5.5e-07 58.5 43 55.8
Actinidia38457 Actinidia chinensis HOM05D006688 ORTHO05D008550 7.2e-07 58.2 43 51.2
MSTRG.10542 Avicennia marina HOM05D006688 ORTHO05D008550 7.2e-07 58.2 44 52.3
COL.COLO4_18173 Corchorus olitorius HOM05D006688 ORTHO05D008550 7.2e-07 58.2 46 50.0
Glyma.17G053100 Glycine max HOM05D006688 ORTHO05D008550 7.2e-07 58.2 43 51.2
Nn8g38791 Nelumbo nucifera HOM05D006688 ORTHO05D008550 7.2e-07 58.2 46 52.2
FAN23G3127 Fragaria x ananassa HOM05D006688 ORTHO05D008550 9.4e-07 57.8 48 47.9
Gohir.A06G073600 Gossypium hirsutum HOM05D006688 ORTHO05D008550 9.4e-07 57.8 46 50.0
Gohir.D06G072500 Gossypium hirsutum HOM05D006688 ORTHO05D008550 9.4e-07 57.8 46 50.0
Gorai.010G084500 Gossypium raimondii HOM05D006688 ORTHO05D008550 9.4e-07 57.8 46 50.0
Rhsim03G0231200 Rhododendron simsii HOM05D006688 ORTHO05D008550 9.4e-07 57.8 46 47.8
RcHm_v2.0_Chr2g0093801 Rosa chinensis HOM05D006688 ORTHO05D008550 9.4e-07 57.8 46 52.2
SGA_v2.0_scaffold23G10037 Striga asiatica HOM05D006688 ORTHO05D008550 9.4e-07 57.8 44 54.5
Glyma.13G106300 Glycine max HOM05D006688 ORTHO05D008550 1.2e-06 57.4 43 48.8
unitig_578.g16412 Utricularia gibba HOM05D006688 ORTHO05D008550 1.2e-06 57.4 44 52.3
Lalb_Chr20g0118781 Lupinus albus HOM05D006688 ORTHO05D008550 1.6e-06 57.0 43 53.5
Psat7g043880 Pisum sativum HOM05D006688 ORTHO05D008550 1.6e-06 57.0 43 51.2
Ah.09g228060 Amaranthus hybridus HOM05D006688 ORTHO05D008550 2.1e-06 56.6 43 48.8
Ciclev10009794m.g Citrus clementina HOM05D006688 ORTHO05D008550 2.1e-06 56.6 43 53.5
FvH4_1g07921 Fragaria vesca HOM05D006688 ORTHO05D008550 2.1e-06 56.6 48 47.9
FAN19G1103 Fragaria x ananassa HOM05D006688 ORTHO05D008550 2.1e-06 56.6 48 47.9
FAN26G0248 Fragaria x ananassa HOM05D006688 ORTHO05D008550 2.1e-06 56.6 48 47.9
FAN26G2887 Fragaria x ananassa HOM05D006688 ORTHO05D008550 2.1e-06 56.6 48 47.9
FAN28G0979 Fragaria x ananassa HOM05D006688 ORTHO05D008550 2.1e-06 56.6 48 47.9
arahy.Tifrunner.gnm1.ann1.LNAK8N Arachis hypogaea HOM05D006688 ORTHO05D008550 2.7e-06 56.2 43 51.2
arahy.Tifrunner.gnm1.ann1.UP5FVB Arachis hypogaea HOM05D006688 ORTHO05D008550 2.7e-06 56.2 43 51.2
arahy.Tifrunner.gnm1.ann1.XSA7KG Arachis hypogaea HOM05D006688 ORTHO05D008550 2.7e-06 56.2 43 51.2
Migut.L01521 Erythranthe guttata HOM05D006688 ORTHO05D008550 2.7e-06 56.2 44 52.3
Lsat_1_v5_gn_5_143161 Lactuca sativa HOM05D006688 ORTHO05D008550 2.7e-06 56.2 46 52.2
Hma1.2p1_0672F.1_g201000 Hydrangea macrophylla HOM05D006688 ORTHO05D008550 3.6e-06 55.8 46 47.8
MBI04_g35655_MAGBIO Magnolia biondii HOM05D006688 ORTHO05D008550 3.6e-06 55.8 46 47.8
AUR62033933 Chenopodium quinoa HOM05D006688 ORTHO05D008550 4.7e-06 55.5 41 51.2
Ca_21292_v3 Cicer arietinum L. HOM05D006688 ORTHO05D008550 4.7e-06 55.5 43 48.8
DCAR_010507 Daucus carota HOM05D006688 ORTHO05D008550 4.7e-06 55.5 42 52.4
Lj7C679G14 Lonicera japonica HOM05D006688 ORTHO05D008550 4.7e-06 55.5 45 48.9
TPR.G9451 Trifolium pratense HOM05D006688 ORTHO05D008550 4.7e-06 55.5 43 48.8
Cc06_g11640 Coffea canephora HOM05D006688 ORTHO05D008550 6.1e-06 55.1 44 47.7
Dinv42341 Davidia involucrata HOM05D006688 ORTHO05D008550 6.1e-06 55.1 46 47.8
MBI04_g12191_MAGBIO Magnolia biondii HOM05D006688 ORTHO05D008550 8.0e-06 54.7 46 47.8


User provided reference genes

Program Settings