Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 7.7e-103 377.1 184 100.0
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 1.7e-94 349.4 168 100.0
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 1.7e-94 349.4 168 100.0
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 1.1e-83 313.5 152 99.3
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 1.1e-83 313.5 152 99.3
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 1.1e-83 313.5 152 99.3
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 1.1e-83 313.5 152 99.3
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 2.3e-83 312.4 152 98.7
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 5.2e-83 311.2 152 98.0
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 1.5e-82 309.7 152 97.4
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 1.5e-82 309.7 152 97.4
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 3.4e-82 308.5 152 96.7
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 5.8e-82 307.8 152 96.7
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 1.7e-81 306.2 152 96.7
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 4.1e-80 301.6 152 94.7
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 1.2e-79 300.1 152 94.1
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 4.6e-79 298.1 152 93.4
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 7.8e-79 297.4 152 93.4
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 7.8e-79 297.4 152 92.1
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 1.7e-78 296.2 152 92.8
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 1.7e-78 296.2 152 92.8
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 3.0e-78 295.4 155 91.0
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 3.0e-78 295.4 152 91.4
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 3.9e-78 295.0 152 92.1
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 6.6e-78 294.3 152 92.1
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 8.6e-78 293.9 152 92.8
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 8.6e-78 293.9 152 92.8
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 1.1e-77 293.5 152 91.4
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 1.1e-77 293.5 152 91.4
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 1.1e-77 293.5 152 91.4
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 1.5e-77 293.1 152 92.1
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 1.9e-77 292.7 152 92.1
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 2.5e-77 292.4 152 91.4
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 3.3e-77 292.0 152 92.1
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 3.3e-77 292.0 152 91.4
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 3.3e-77 292.0 152 91.4
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 4.3e-77 291.6 155 90.3
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 4.3e-77 291.6 152 90.8
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 9.5e-77 290.4 152 90.8
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 1.2e-76 290.0 154 90.3
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 1.2e-76 290.0 152 90.8
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 1.2e-76 290.0 152 90.8
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 2.1e-76 289.3 152 90.8
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 2.8e-76 288.9 152 90.8
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 2.8e-76 288.9 152 90.8
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 2.8e-76 288.9 152 90.8
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 3.6e-76 288.5 152 90.8
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 3.6e-76 288.5 152 89.5
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 3.6e-76 288.5 152 90.1
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 3.6e-76 288.5 152 90.1
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 3.6e-76 288.5 152 90.1
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 3.6e-76 288.5 152 90.1
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 4.7e-76 288.1 152 90.8
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 4.7e-76 288.1 152 90.1
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 4.7e-76 288.1 152 90.1
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 4.7e-76 288.1 152 90.8
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 4.7e-76 288.1 152 90.8
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 6.2e-76 287.7 151 91.4
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 6.2e-76 287.7 152 89.5
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 6.2e-76 287.7 152 90.1
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 6.2e-76 287.7 152 89.5
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 6.2e-76 287.7 152 90.8
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 6.2e-76 287.7 151 91.4
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 6.2e-76 287.7 152 89.5
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 8.1e-76 287.3 152 90.1
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 8.1e-76 287.3 152 89.5
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 1.1e-75 287.0 152 89.5
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 1.1e-75 287.0 152 90.1
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 1.1e-75 287.0 152 90.1
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 1.1e-75 287.0 152 90.1
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 1.4e-75 286.6 152 90.1
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 1.8e-75 286.2 151 90.7
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 1.8e-75 286.2 152 90.1
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 1.8e-75 286.2 152 90.1
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 2.3e-75 285.8 151 90.7
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 2.3e-75 285.8 152 89.5
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 2.3e-75 285.8 152 88.8
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 3.1e-75 285.4 155 87.7
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 3.1e-75 285.4 151 90.1
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 3.1e-75 285.4 152 88.2
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 3.1e-75 285.4 152 89.5
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 4.0e-75 285.0 152 89.5
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 4.0e-75 285.0 151 89.4
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 5.2e-75 284.6 152 89.5
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 5.2e-75 284.6 151 90.1
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 5.2e-75 284.6 152 89.5
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 6.8e-75 284.3 152 89.5
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 8.9e-75 283.9 152 88.8
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 8.9e-75 283.9 151 90.1
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 1.2e-74 283.5 152 89.5
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 1.2e-74 283.5 152 89.5
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 1.5e-74 283.1 152 88.2
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 1.5e-74 283.1 152 88.2
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 2.0e-74 282.7 152 89.5
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 2.0e-74 282.7 152 88.2
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 2.0e-74 282.7 152 87.5
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 2.0e-74 282.7 152 87.5
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 2.0e-74 282.7 152 88.8
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 2.6e-74 282.3 152 88.8
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 2.6e-74 282.3 152 87.5
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 3.4e-74 282.0 152 87.5
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 3.4e-74 282.0 152 88.8
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 3.4e-74 282.0 152 88.8
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 5.8e-74 281.2 152 88.2
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 5.8e-74 281.2 150 89.3
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 7.6e-74 280.8 152 87.5
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 7.6e-74 280.8 152 88.2
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 7.6e-74 280.8 152 86.8
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 9.9e-74 280.4 152 87.5
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 1.3e-73 280.0 151 88.7
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 1.3e-73 280.0 152 88.8
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 1.3e-73 280.0 152 88.2
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 1.3e-73 280.0 151 88.7
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 1.3e-73 280.0 151 88.7
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 1.7e-73 279.6 152 88.2
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 4.9e-73 278.1 152 88.8
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 1.9e-72 276.2 151 86.1
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 1.2e-71 273.5 151 84.8
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 1.6e-71 273.1 151 84.8
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 1.3e-70 270.0 151 86.1
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 2.3e-70 269.2 151 84.1
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 7.8e-63 244.2 151 74.2
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 8.7e-62 240.7 143 81.8
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 3.3e-61 238.8 125 90.4
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 5.6e-61 238.0 122 91.8
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 5.6e-61 238.0 141 81.6
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 2.1e-60 236.1 150 72.7
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 2.8e-60 235.7 122 91.8
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 3.6e-60 235.3 152 76.3
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 2.4e-59 232.6 122 91.8
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 6.0e-55 218.0 137 78.1
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 5.6e-53 211.5 149 68.5
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 1.2e-39 167.2 88 87.5
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 3.0e-38 162.5 89 85.4
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.6e-31 138.7 143 54.5
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.6e-31 138.7 143 54.5
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 4.8e-28 128.6 121 57.9
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 5.7e-21 105.1 102 57.8
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 1.5e-08 63.9 101 30.7
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 3.6e-07 59.3 33 84.8


User provided reference genes

Program Settings