Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p50660 Brassica napus HOM05D004093 ORTHO05D004981 1.5e-59 232.6 118 100.0
C09p10190 Brassica napus HOM05D004093 ORTHO05D004981 1.4e-57 226.1 118 98.3
BraA01t00441Z Brassica rapa HOM05D004093 ORTHO05D004981 1.7e-55 219.2 131 88.5
C04p37220 Brassica napus HOM05D004093 ORTHO05D004981 6.6e-55 217.2 126 90.5
BcaC04g23281 Brassica carinata HOM05D004093 ORTHO05D004981 9.8e-51 203.4 118 90.7
A01p04580 Brassica napus HOM05D004093 ORTHO05D004981 6.4e-50 200.7 118 89.8
BraA03t15310Z Brassica rapa HOM05D004093 ORTHO05D004981 6.4e-50 200.7 118 89.8
BcaC09g52186 Brassica carinata HOM05D004093 ORTHO05D004981 1.4e-49 199.5 118 89.0
C01p04970 Brassica napus HOM05D004093 ORTHO05D004981 1.4e-49 199.5 118 89.0
BolC1t00478H Brassica oleracea HOM05D004093 ORTHO05D004981 1.4e-49 199.5 118 89.0
Thhalv10024609m.g Eutrema salsugineum HOM05D004093 ORTHO05D004981 1.4e-49 199.5 118 89.0
BcaNung04674 Brassica carinata HOM05D004093 ORTHO05D004981 2.4e-49 198.7 118 89.0
BcaB04g19406 Brassica carinata HOM05D004093 ORTHO05D004981 3.2e-49 198.4 101 99.0
A02p41650 Brassica napus HOM05D004093 ORTHO05D004981 5.4e-49 197.6 118 89.0
A08p17410 Brassica napus HOM05D004093 ORTHO05D004981 9.2e-49 196.8 118 88.1
A08p17440 Brassica napus HOM05D004093 ORTHO05D004981 9.2e-49 196.8 118 88.1
AL7G17710 Arabidopsis lyrata HOM05D004093 ORTHO05D004981 1.2e-48 196.4 118 87.3
BcaB03g11876 Brassica carinata HOM05D004093 ORTHO05D004981 2.0e-48 195.7 118 87.3
CARHR241850 Cardamine hirsuta HOM05D004093 ORTHO05D004981 2.0e-48 195.7 118 87.3
AT4G33760 Arabidopsis thaliana HOM05D004093 ORTHO05D004981 2.7e-48 195.3 118 87.3
BcaC01g00967 Brassica carinata HOM05D004093 ORTHO05D004981 2.7e-48 195.3 118 87.3
C03p86430 Brassica napus HOM05D004093 ORTHO05D004981 2.7e-48 195.3 118 87.3
BolC3t20936H Brassica oleracea HOM05D004093 ORTHO05D004981 2.7e-48 195.3 118 87.3
Sp7g31500 Schrenkiella parvula HOM05D004093 ORTHO05D004981 4.6e-48 194.5 115 88.7
Carub.0007s0667 Capsella rubella HOM05D004093 ORTHO05D004981 1.0e-47 193.4 118 86.4
Aa31sc178G40 Aethionema arabicum HOM05D004093 ORTHO05D004981 1.7e-47 192.6 115 87.0
arahy.Tifrunner.gnm1.ann1.14EEYB Arachis hypogaea HOM05D004093 ORTHO05D004981 2.5e-46 188.7 117 82.1
VMungo0251G2341 Vigna mungo HOM05D004093 ORTHO05D004981 4.3e-46 188.0 116 81.9
Rhsim11G0149600 Rhododendron simsii HOM05D004093 ORTHO05D004981 5.6e-46 187.6 117 81.2
FvH4_2g03040 Fragaria vesca HOM05D004093 ORTHO05D004981 7.3e-46 187.2 118 81.4
FAN24G1787 Fragaria x ananassa HOM05D004093 ORTHO05D004981 7.3e-46 187.2 118 81.4
FAN27G3135 Fragaria x ananassa HOM05D004093 ORTHO05D004981 7.3e-46 187.2 118 81.4
CSS0001341 Camellia sinensis var. sinensis HOM05D004093 ORTHO05D004981 9.5e-46 186.8 118 81.4
FAN15G0664 Fragaria x ananassa HOM05D004093 ORTHO05D004981 9.5e-46 186.8 116 81.9
Glyma.05G236700 Glycine max HOM05D004093 ORTHO05D004981 9.5e-46 186.8 116 81.9
TPR.G32673 Trifolium pratense HOM05D004093 ORTHO05D004981 1.6e-45 186.0 116 81.9
GSVIVG01037036001 Vitis vinifera HOM05D004093 ORTHO05D004981 2.1e-45 185.7 118 81.4
Ah.05g177500 Amaranthus hybridus HOM05D004093 ORTHO05D004981 2.8e-45 185.3 118 80.5
CiPaw.05G021800 Carya illinoinensis HOM05D004093 ORTHO05D004981 2.8e-45 185.3 118 79.7
HanXRQChr03g0069101 Helianthus annuus HOM05D004093 ORTHO05D004981 3.6e-45 184.9 115 81.7
Phvul.002G318600 Phaseolus vulgaris HOM05D004093 ORTHO05D004981 3.6e-45 184.9 116 81.0
RcHm_v2.0_Chr6g0247831 Rosa chinensis HOM05D004093 ORTHO05D004981 3.6e-45 184.9 118 80.5
Medtr4g120810 Medicago truncatula HOM05D004093 ORTHO05D004981 4.7e-45 184.5 116 81.0
SGA_v2.0_scaffold219G42544 Striga asiatica HOM05D004093 ORTHO05D004981 4.7e-45 184.5 116 81.0
Lalb_Chr16g0387791 Lupinus albus HOM05D004093 ORTHO05D004981 6.2e-45 184.1 114 81.6
MD10G1112200 Malus domestica HOM05D004093 ORTHO05D004981 6.2e-45 184.1 118 80.5
PGR119G0904 Punica granatum HOM05D004093 ORTHO05D004981 6.2e-45 184.1 116 79.3
Nitab4.5_0000772g0040 Nicotiana tabacum HOM05D004093 ORTHO05D004981 8.1e-45 183.7 115 80.9
Phvul.011G054700 Phaseolus vulgaris HOM05D004093 ORTHO05D004981 8.1e-45 183.7 116 79.3
vmacro01935 Vaccinium macrocarpon HOM05D004093 ORTHO05D004981 8.1e-45 183.7 115 80.9
CAN.G606.83 Capsicum annuum HOM05D004093 ORTHO05D004981 1.1e-44 183.3 115 80.9
Ca_17297_v3 Cicer arietinum L. HOM05D004093 ORTHO05D004981 1.1e-44 183.3 116 80.2
THA.LOC104807205 Tarenaya hassleriana HOM05D004093 ORTHO05D004981 1.1e-44 183.3 115 82.6
Cfa004713 Carpinus fangiana HOM05D004093 ORTHO05D004981 1.4e-44 183.0 118 79.7
Medtr8g104740 Medicago truncatula HOM05D004093 ORTHO05D004981 1.4e-44 183.0 116 80.2
Potri.001G289001 Populus trichocarpa HOM05D004093 ORTHO05D004981 1.4e-44 183.0 118 78.8
CiPaw.06G163100 Carya illinoinensis HOM05D004093 ORTHO05D004981 1.8e-44 182.6 118 80.5
Haze_10324 Corylus avellana HOM05D004093 ORTHO05D004981 1.8e-44 182.6 118 79.7
Migut.N01121 Erythranthe guttata HOM05D004093 ORTHO05D004981 1.8e-44 182.6 116 79.3
QL11p028820 Quercus lobata HOM05D004093 ORTHO05D004981 1.8e-44 182.6 117 79.5
Solyc01g106740.4 Solanum lycopersicum HOM05D004093 ORTHO05D004981 1.8e-44 182.6 115 80.0
Oeu018200.1 Olea europaea HOM05D004093 ORTHO05D004981 2.3e-44 182.2 116 80.2
Potri.009G084300 Populus trichocarpa HOM05D004093 ORTHO05D004981 2.3e-44 182.2 113 82.3
Dinv16064 Davidia involucrata HOM05D004093 ORTHO05D004981 3.1e-44 181.8 118 79.7
HanXRQChr16g0510261 Helianthus annuus HOM05D004093 ORTHO05D004981 3.1e-44 181.8 118 78.0
Nitab4.5_0010657g0010 Nicotiana tabacum HOM05D004093 ORTHO05D004981 3.1e-44 181.8 115 80.0
Oeu037299.1 Olea europaea HOM05D004093 ORTHO05D004981 3.1e-44 181.8 113 83.2
ECA240G1647 Erigeron canadensis HOM05D004093 ORTHO05D004981 4.0e-44 181.4 115 80.0
Prupe.8G151800 Prunus persica HOM05D004093 ORTHO05D004981 4.0e-44 181.4 118 78.0
AUR62023347 Chenopodium quinoa HOM05D004093 ORTHO05D004981 5.2e-44 181.0 116 80.2
Manes.07G052300 Manihot esculenta HOM05D004093 ORTHO05D004981 5.2e-44 181.0 118 79.7
PGSC0003DMG402005133 Solanum tuberosum HOM05D004093 ORTHO05D004981 5.2e-44 181.0 115 79.1
Dinv09528 Davidia involucrata HOM05D004093 ORTHO05D004981 6.8e-44 180.6 116 79.3
Hma1.2p1_1758F.1_g301170 Hydrangea macrophylla HOM05D004093 ORTHO05D004981 6.8e-44 180.6 113 81.4
Lsat_1_v5_gn_9_113901 Lactuca sativa HOM05D004093 ORTHO05D004981 8.9e-44 180.3 115 80.0
unitig_62.g23638 Utricularia gibba HOM05D004093 ORTHO05D004981 8.9e-44 180.3 114 80.7
CANSAT25G3849 Cannabis sativa HOM05D004093 ORTHO05D004981 1.2e-43 179.9 112 82.1
AUR62013810 Chenopodium quinoa HOM05D004093 ORTHO05D004981 1.2e-43 179.9 116 79.3
MELO3C018029.2 Cucumis melo HOM05D004093 ORTHO05D004981 1.2e-43 179.9 118 78.8
Eucgr.I02505 Eucalyptus grandis HOM05D004093 ORTHO05D004981 1.2e-43 179.9 118 78.0
Sopen01g049060 Solanum pennellii HOM05D004093 ORTHO05D004981 1.2e-43 179.9 115 79.1
Cc02_g20210 Coffea canephora HOM05D004093 ORTHO05D004981 1.5e-43 179.5 118 79.7
CsaV3_4G000020 Cucumis sativus L. HOM05D004093 ORTHO05D004981 1.5e-43 179.5 118 78.8
TAR159G0001 Trochodendron aralioides HOM05D004093 ORTHO05D004981 1.5e-43 179.5 118 78.0
MSTRG.27768 Avicennia marina HOM05D004093 ORTHO05D004981 2.0e-43 179.1 117 78.6
EL10Ac1g00697 Beta vulgaris HOM05D004093 ORTHO05D004981 2.0e-43 179.1 114 79.8
Sabra09G0065000 Salix brachista HOM05D004093 ORTHO05D004981 2.0e-43 179.1 126 74.6
Aqoxy7G02734 Aquilegia oxysepala HOM05D004093 ORTHO05D004981 2.6e-43 178.7 114 79.8
PSO210G2081 Papaver somniferum HOM05D004093 ORTHO05D004981 2.6e-43 178.7 113 80.5
PSO447G0184 Papaver somniferum HOM05D004093 ORTHO05D004981 2.6e-43 178.7 113 81.4
TWI14G0771 Tripterygium wilfordii HOM05D004093 ORTHO05D004981 2.6e-43 178.7 118 77.1
ClCG10G009970 Citrullus lanatus HOM05D004093 ORTHO05D004981 3.4e-43 178.3 118 78.8
Aqoxy2G01432 Aquilegia oxysepala HOM05D004093 ORTHO05D004981 4.4e-43 177.9 114 78.9
ECA233G6085 Erigeron canadensis HOM05D004093 ORTHO05D004981 4.4e-43 177.9 115 79.1
Atru.chr5.2252 Acer truncatum HOM05D004093 ORTHO05D004981 5.8e-43 177.6 112 80.4
Sabra16G0180800 Salix brachista HOM05D004093 ORTHO05D004981 5.8e-43 177.6 118 76.3
Sed0024148 Sechium edule HOM05D004093 ORTHO05D004981 7.5e-43 177.2 118 78.0
CDE07G1203 Ceratophyllum demersum HOM05D004093 ORTHO05D004981 1.7e-42 176.0 114 78.9
Lj4g0018571 Lotus japonicus HOM05D004093 ORTHO05D004981 1.7e-42 176.0 114 78.1
Actinidia04397 Actinidia chinensis HOM05D004093 ORTHO05D004981 2.2e-42 175.6 118 77.1
COL.COLO4_17799 Corchorus olitorius HOM05D004093 ORTHO05D004981 4.9e-42 174.5 116 75.9
ATR0767G039 Amborella trichopoda HOM05D004093 ORTHO05D004981 6.4e-42 174.1 113 77.9
MBI16_g34665_MAGBIO Magnolia biondii HOM05D004093 ORTHO05D004981 6.4e-42 174.1 113 77.9
DCAR_021934 Daucus carota HOM05D004093 ORTHO05D004981 8.3e-42 173.7 112 80.4
Duzib052G0943 Durio zibethinus HOM05D004093 ORTHO05D004981 8.3e-42 173.7 116 77.6
Thecc.02G031600 Theobroma cacao HOM05D004093 ORTHO05D004981 8.3e-42 173.7 118 77.1
CDE04G3016 Ceratophyllum demersum HOM05D004093 ORTHO05D004981 1.4e-41 172.9 114 77.2
Medtr1g113700 Medicago truncatula HOM05D004093 ORTHO05D004981 1.4e-41 172.9 123 74.0
TWI59G0012 Tripterygium wilfordii HOM05D004093 ORTHO05D004981 3.2e-41 171.8 115 74.8
Sed0011100 Sechium edule HOM05D004093 ORTHO05D004981 9.2e-41 170.2 116 75.9
Gohir.A01G180900 Gossypium hirsutum HOM05D004093 ORTHO05D004981 2.1e-40 169.1 115 75.7
Os01g0153400 Oryza sativa ssp. japonica HOM05D004093 ORTHO05D004981 2.7e-40 168.7 116 72.4
SEGI_31310 Sequoiadendron giganteum HOM05D004093 ORTHO05D004981 2.7e-40 168.7 114 73.7
SEGI_06015 Sequoiadendron giganteum HOM05D004093 ORTHO05D004981 4.6e-40 167.9 113 74.3
SEGI_18816 Sequoiadendron giganteum HOM05D004093 ORTHO05D004981 4.6e-40 167.9 113 74.3
Gohir.D01G172000 Gossypium hirsutum HOM05D004093 ORTHO05D004981 6.0e-40 167.5 115 74.8
Gorai.002G213600 Gossypium raimondii HOM05D004093 ORTHO05D004981 6.0e-40 167.5 115 74.8
Medtr4g052070 Medicago truncatula HOM05D004093 ORTHO05D004981 6.0e-40 167.5 116 74.1
Zm00001eb124020 Zea mays HOM05D004093 ORTHO05D004981 1.7e-39 166.0 113 73.5
HPP92_001209 Vanilla planifolia HOM05D004093 ORTHO05D004981 1.9e-38 162.5 113 72.6
SMO364G0944 Selaginella moellendorffii HOM05D004093 ORTHO05D004981 7.3e-38 160.6 115 69.6
CBR_g7978 Chara braunii HOM05D004093 ORTHO05D004981 1.2e-37 159.8 116 68.1
Mapoly0029s0082 Marchantia polymorpha HOM05D004093 ORTHO05D004981 1.2e-37 159.8 114 70.2
AagrBONN_evm.TU.Sc2ySwM_117.2705 Anthoceros agrestis HOM05D004093 ORTHO05D004981 1.1e-36 156.8 114 68.4
AagrBONN_evm.TU.Sc2ySwM_117.2710 Anthoceros agrestis HOM05D004093 ORTHO05D004981 1.1e-36 156.8 114 68.4
Lj5C222T15 Lonicera japonica HOM05D004093 ORTHO05D004981 1.1e-36 156.8 115 71.3
Pp3c20_5000 Physcomitrium patens HOM05D004093 ORTHO05D004981 1.8e-36 156.0 116 68.1
Peaxi162Scf00016g03248 Petunia axillaris HOM05D004093 ORTHO05D004981 1.5e-35 152.9 115 68.7
Cre09.g390986 Chlamydomonas reinhardtii HOM05D004093 ORTHO05D004981 2.9e-34 148.7 114 64.9
MCO14G538 Micromonas commoda HOM05D004093 ORTHO05D004981 3.8e-34 148.3 114 64.0
CSS0049011 Camellia sinensis var. sinensis HOM05D004093 ORTHO05D004981 6.4e-34 147.5 118 68.6
PRCOL_00006371 Prasinoderma coloniale HOM05D004093 ORTHO05D004981 1.2e-32 143.3 117 60.7
arahy.Tifrunner.gnm1.ann1.K8EMZF Arachis hypogaea HOM05D004093 ORTHO05D004981 1.1e-30 136.7 76 88.2
Ca_17304_v3 Cicer arietinum L. HOM05D004093 ORTHO05D004981 2.5e-30 135.6 88 77.3
QL11p028781 Quercus lobata HOM05D004093 ORTHO05D004981 4.7e-29 131.3 94 72.3
Hund17142 Selenicereus undatus HOM05D004093 ORTHO05D004981 4.7e-29 131.3 86 75.6
CSS0014733 Camellia sinensis var. sinensis HOM05D004093 ORTHO05D004981 3.1e-28 128.6 96 71.9
CSS0016143 Camellia sinensis var. sinensis HOM05D004093 ORTHO05D004981 2.7e-24 115.5 118 57.6
ECA233G4634 Erigeron canadensis HOM05D004093 ORTHO05D004981 8.1e-21 104.0 69 75.4
PRCOL_00006453 Prasinoderma coloniale HOM05D004093 ORTHO05D004981 3.9e-15 85.1 122 42.6
Glyma.08G043900 Glycine max HOM05D004093 ORTHO05D004981 3.5e-08 62.0 31 87.1
Cpa.g.c43557 Carica papaya HOM05D004093 ORTHO05D004981 6.0e-08 61.2 31 90.3
Ciclev10028050m.g Citrus clementina HOM05D004093 ORTHO05D004981 6.0e-08 61.2 31 90.3
Sc20g0001830 Simmondsia chinensis HOM05D004093 ORTHO05D004981 1.0e-07 60.5 31 90.3
SalBow3G3489 Salvia bowleyana HOM05D001472 ORTHO05D007811 1.1e-06 57.0 52 53.8
Glyma.16G091002 Glycine max HOM05D004093 ORTHO05D004981 1.5e-06 56.6 31 83.9


User provided reference genes

Program Settings