Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p29210 Brassica napus HOM05D000188 ORTHO05D041154 3.4e-52 208.0 101 100.0
BolC9t55781H Brassica oleracea HOM05D000188 ORTHO05D041154 7.4e-31 137.1 77 90.9
C02p48200 Brassica napus HOM05D000188 ORTHO05D003976 6.7e-16 87.4 130 46.2
BolC2t10853H Brassica oleracea HOM05D000188 ORTHO05D003976 6.7e-16 87.4 130 46.2
CARHR174460 Cardamine hirsuta HOM05D000188 ORTHO05D003976 1.5e-15 86.3 141 43.3
AL8G11270 Arabidopsis lyrata HOM05D000188 ORTHO05D003976 4.8e-14 81.3 141 40.4
Thhalv10000743m.g Eutrema salsugineum HOM05D000188 ORTHO05D003976 4.8e-14 81.3 141 40.4
A02p30660 Brassica napus HOM05D000188 ORTHO05D003976 6.3e-14 80.9 133 42.1
AT5G47010 Arabidopsis thaliana HOM05D000188 ORTHO05D003976 1.4e-13 79.7 141 39.7
Carub.0008s0082 Capsella rubella HOM05D000188 ORTHO05D003976 1.8e-13 79.3 139 40.3
Sp2g11810 Schrenkiella parvula HOM05D000188 ORTHO05D003976 1.8e-13 79.3 141 39.0
BraA02t08082Z Brassica rapa HOM05D000188 ORTHO05D003976 4.1e-13 78.2 133 41.4
Aa31LG9G5970 Aethionema arabicum HOM05D000188 ORTHO05D003976 3.5e-12 75.1 140 38.6
THA.LOC104806689 Tarenaya hassleriana HOM05D000188 ORTHO05D003976 3.8e-11 71.6 142 38.0
GSVIVG01013247001 Vitis vinifera HOM05D000188 ORTHO05D003976 9.4e-10 67.0 126 39.7
arahy.Tifrunner.gnm1.ann1.FN6SHM Arachis hypogaea HOM05D000188 ORTHO05D003976 1.2e-09 66.6 137 39.4
arahy.Tifrunner.gnm1.ann1.L380RS Arachis hypogaea HOM05D000188 ORTHO05D003976 1.2e-09 66.6 137 39.4
Potri.001G148100 Populus trichocarpa HOM05D000188 ORTHO05D003976 1.2e-09 66.6 134 36.6
Manes.17G021900 Manihot esculenta HOM05D000188 ORTHO05D003976 2.1e-09 65.9 138 34.8
VMungo1215G0424 Vigna mungo HOM05D000188 ORTHO05D003976 2.1e-09 65.9 137 37.2
Cpa.g.sc29.1 Carica papaya HOM05D000188 ORTHO05D003976 2.7e-09 65.5 146 34.9
Oeu053049.1 Olea europaea HOM05D000188 ORTHO05D003976 3.6e-09 65.1 127 36.2
Glyma.01G202600 Glycine max HOM05D000188 ORTHO05D003976 4.7e-09 64.7 135 37.0
Phvul.002G003300 Phaseolus vulgaris HOM05D000188 ORTHO05D003976 6.1e-09 64.3 137 36.5
Sabra01G0117900 Salix brachista HOM05D000188 ORTHO05D003976 6.1e-09 64.3 138 34.8
Ca_24627_v3 Cicer arietinum L. HOM05D000188 ORTHO05D003976 1.4e-08 63.2 132 37.9
Haze_08316 Corylus avellana HOM05D000188 ORTHO05D003976 1.8e-08 62.8 148 35.1
Psat2g175000 Pisum sativum HOM05D000188 ORTHO05D003976 1.8e-08 62.8 133 37.6
CANSAT21G0831 Cannabis sativa HOM05D000188 ORTHO05D003976 2.3e-08 62.4 136 37.5
Sabra01G0116400 Salix brachista HOM05D000188 ORTHO05D003976 3.0e-08 62.0 138 33.3
Sabra03G0056200 Salix brachista HOM05D000188 ORTHO05D003976 3.0e-08 62.0 139 33.1
TWI81G0847 Tripterygium wilfordii HOM05D000188 ORTHO05D003976 3.0e-08 62.0 136 34.6
MELO3C013879.2 Cucumis melo HOM05D000188 ORTHO05D003976 4.0e-08 61.6 135 36.3
Lj2g0002868 Lotus japonicus HOM05D000188 ORTHO05D003976 4.0e-08 61.6 133 39.1
CsaV3_3G002080 Cucumis sativus L. HOM05D000188 ORTHO05D003976 5.2e-08 61.2 135 35.6
Potri.003G086400 Populus trichocarpa HOM05D000188 ORTHO05D003976 5.2e-08 61.2 139 32.4
ClCG10G001940 Citrullus lanatus HOM05D000188 ORTHO05D003976 6.7e-08 60.8 135 35.6
DCAR_008304 Daucus carota HOM05D000188 ORTHO05D003976 6.7e-08 60.8 127 37.0
TPR.G22716 Trifolium pratense HOM05D000188 ORTHO05D003976 8.8e-08 60.5 134 36.6
PGR042G0017 Punica granatum HOM05D000188 ORTHO05D003976 1.1e-07 60.1 136 33.1
Medtr5g013820 Medicago truncatula HOM05D000188 ORTHO05D003976 1.5e-07 59.7 129 36.4
TWI60G1508 Tripterygium wilfordii HOM05D000188 ORTHO05D003976 1.5e-07 59.7 140 33.6
Cfa012367 Carpinus fangiana HOM05D000188 ORTHO05D003976 2.0e-07 59.3 148 33.1
Sed0018558 Sechium edule HOM05D000188 ORTHO05D003976 2.0e-07 59.3 136 36.8
TWI15G0852 Tripterygium wilfordii HOM05D000188 ORTHO05D003976 2.0e-07 59.3 139 34.5
Glyma.11G040200 Glycine max HOM05D000188 ORTHO05D003976 2.6e-07 58.9 138 34.8
MBI04_g03344_MAGBIO Magnolia biondii HOM05D000188 ORTHO05D003976 4.4e-07 58.2 128 35.9
Solyc08g007110.4 Solanum lycopersicum HOM05D000188 ORTHO05D003976 4.4e-07 58.2 130 35.4
Sopen08g003060 Solanum pennellii HOM05D000188 ORTHO05D003976 4.4e-07 58.2 130 35.4
PGSC0003DMG400034293 Solanum tuberosum HOM05D000188 ORTHO05D003976 4.4e-07 58.2 130 35.4
Actinidia25934 Actinidia chinensis HOM05D000188 ORTHO05D003976 7.5e-07 57.4 128 36.7
Lalb_Chr16g0379271 Lupinus albus HOM05D000188 ORTHO05D003976 7.5e-07 57.4 138 35.5
Lalb_Chr05g0214101 Lupinus albus HOM05D000188 ORTHO05D003976 9.7e-07 57.0 138 36.2
Nn6g33690 Nelumbo nucifera HOM05D000188 ORTHO05D003976 1.7e-06 56.2 127 36.2
TAR375G0650 Trochodendron aralioides HOM05D000188 ORTHO05D003976 1.7e-06 56.2 125 36.0
CiPaw.11G086500 Carya illinoinensis HOM05D000188 ORTHO05D003976 2.8e-06 55.5 151 33.8
PGSC0003DMG400001863 Solanum tuberosum HOM05D000188 ORTHO05D003976 2.8e-06 55.5 136 33.8
Oeu039350.3 Olea europaea HOM05D000188 ORTHO05D003976 3.7e-06 55.1 141 32.6
Eucgr.E00323 Eucalyptus grandis HOM05D000188 ORTHO05D003976 4.8e-06 54.7 140 32.1
Actinidia31476 Actinidia chinensis HOM05D000188 ORTHO05D003976 6.3e-06 54.3 131 34.4
Lalb_Chr09g0323981 Lupinus albus HOM05D000188 ORTHO05D003976 6.3e-06 54.3 138 35.5
Nn1g00076 Nelumbo nucifera HOM05D000188 ORTHO05D003976 6.3e-06 54.3 128 34.4
Nn1g00669 Nelumbo nucifera HOM05D000188 ORTHO05D003976 6.3e-06 54.3 128 34.4
Nitab4.5_0001444g0010 Nicotiana tabacum HOM05D000188 ORTHO05D003976 6.3e-06 54.3 134 35.1
QL12p007494 Quercus lobata HOM05D000188 ORTHO05D003976 8.2e-06 53.9 153 30.7
RcHm_v2.0_Chr7g0207971 Rosa chinensis HOM05D000188 ORTHO05D003976 8.2e-06 53.9 144 30.6
Sc01g0007820 Simmondsia chinensis HOM05D000188 ORTHO05D003976 8.2e-06 53.9 138 34.1


User provided reference genes

Program Settings