Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 2.1e-70 268.9 130 100.0
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 2.1e-70 268.9 130 100.0
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 6.1e-70 267.3 129 100.0
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 3.0e-69 265.0 130 97.7
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 8.8e-69 263.5 129 97.7
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 5.9e-65 250.8 124 95.2
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 8.8e-61 236.9 132 89.4
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 8.8e-61 236.9 132 89.4
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 8.8e-61 236.9 132 89.4
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 4.4e-60 234.6 132 88.6
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 6.3e-59 230.7 124 90.3
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 1.9e-34 149.4 75 93.3
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 1.1e-13 80.5 48 83.3
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 2.4e-13 79.3 48 81.2
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 2.4e-13 79.3 48 81.2
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 3.1e-13 79.0 48 81.2
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 3.1e-13 79.0 48 81.2
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 3.1e-13 79.0 48 81.2
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 4.0e-13 78.6 48 79.2
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 4.0e-13 78.6 48 81.2
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 5.3e-13 78.2 48 79.2
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 5.3e-13 78.2 48 81.2
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 5.3e-13 78.2 48 81.2
A05p26160 Brassica napus HOM05D004874 ORTHO05D014502 9.0e-13 77.4 49 77.6
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 1.2e-12 77.0 48 79.2
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 2.6e-12 75.9 48 79.2
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 4.4e-12 75.1 48 75.0
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 7.6e-12 74.3 41 87.8
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 2.2e-11 72.8 48 72.9
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 2.2e-11 72.8 48 72.9
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 2.9e-11 72.4 48 72.9
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 2.9e-11 72.4 48 70.8
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 3.8e-11 72.0 48 72.9
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 3.8e-11 72.0 48 72.9
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 4.9e-11 71.6 48 70.8
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 4.9e-11 71.6 48 70.8
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 4.9e-11 71.6 48 70.8
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 4.9e-11 71.6 48 70.8
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 6.4e-11 71.2 48 70.8
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 6.4e-11 71.2 48 70.8
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 6.4e-11 71.2 48 70.8
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 6.4e-11 71.2 48 70.8
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 8.4e-11 70.9 48 68.8
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 8.4e-11 70.9 48 72.9
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 1.1e-10 70.5 48 72.9
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 1.1e-10 70.5 48 72.9
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 1.4e-10 70.1 48 66.7
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 1.9e-10 69.7 48 72.9
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 2.4e-10 69.3 48 70.8
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 4.2e-10 68.6 48 70.8
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 7.1e-10 67.8 48 70.8
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 9.3e-10 67.4 48 70.8
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 9.3e-10 67.4 48 68.8
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 9.3e-10 67.4 48 68.8
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 9.3e-10 67.4 48 68.8
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 9.3e-10 67.4 48 70.8
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 9.3e-10 67.4 48 68.8
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 1.2e-09 67.0 48 66.7
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 1.2e-09 67.0 48 66.7
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 1.2e-09 67.0 48 70.8
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 1.2e-09 67.0 48 68.8
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 1.2e-09 67.0 48 68.8
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 1.6e-09 66.6 48 68.8
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 1.6e-09 66.6 48 66.7
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 1.6e-09 66.6 48 68.8
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 2.1e-09 66.2 48 64.6
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 2.1e-09 66.2 47 66.0
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 2.1e-09 66.2 48 64.6
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.7e-09 65.9 49 65.3
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 2.7e-09 65.9 48 66.7
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 3.5e-09 65.5 48 66.7
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 3.5e-09 65.5 48 66.7
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 4.6e-09 65.1 48 66.7
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 4.6e-09 65.1 48 66.7
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 6.0e-09 64.7 48 64.6
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 7.8e-09 64.3 46 67.4
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 7.8e-09 64.3 46 67.4
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 7.8e-09 64.3 48 64.6
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 7.8e-09 64.3 48 64.6
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 1.0e-08 63.9 50 70.0
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 1.3e-08 63.5 49 63.3
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 1.7e-08 63.2 47 66.0
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 1.7e-08 63.2 48 66.7
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 2.3e-08 62.8 48 62.5
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 2.3e-08 62.8 47 66.0
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 3.0e-08 62.4 48 62.5
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 3.9e-08 62.0 48 62.5
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 3.9e-08 62.0 48 62.5
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 6.6e-08 61.2 48 60.4
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 8.7e-08 60.8 48 60.4
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 8.7e-08 60.8 45 64.4
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 8.7e-08 60.8 45 64.4
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 8.7e-08 60.8 48 64.6
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.1e-07 60.5 45 64.4
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 1.1e-07 60.5 47 63.8
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 1.5e-07 60.1 48 60.4
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 1.5e-07 60.1 49 65.3
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 1.9e-07 59.7 48 60.4
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 2.5e-07 59.3 48 58.3
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 4.3e-07 58.5 48 64.6
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 5.6e-07 58.2 47 61.7
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 5.6e-07 58.2 46 60.9
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 5.6e-07 58.2 47 61.7
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 7.3e-07 57.8 47 59.6
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 9.6e-07 57.4 48 58.3
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 1.6e-06 56.6 48 60.4
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 1.6e-06 56.6 47 57.4
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 1.6e-06 56.6 47 57.4
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 1.6e-06 56.6 48 62.5
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 1.6e-06 56.6 48 62.5
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 1.6e-06 56.6 48 56.2
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.6e-06 56.6 48 58.3
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 2.8e-06 55.8 45 62.2
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 6.2e-06 54.7 48 58.3
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 8.1e-06 54.3 48 56.2


User provided reference genes

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