Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 1.1e-74 283.1 135 100.0
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 1.5e-42 176.4 86 100.0
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 9.2e-37 157.1 103 76.7
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 2.7e-36 155.6 103 75.7
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 2.7e-36 155.6 103 75.7
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 2.7e-36 155.6 103 75.7
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 3.5e-36 155.2 103 75.7
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 4.6e-36 154.8 103 75.7
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 6.0e-36 154.5 103 75.7
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 1.5e-34 149.8 103 71.8
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 3.3e-34 148.7 103 69.9
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 5.6e-34 147.9 103 69.9
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 7.3e-34 147.5 103 68.9
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 9.6e-34 147.1 103 68.9
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.2e-33 146.7 103 68.9
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 1.2e-33 146.7 103 68.9
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.6e-33 146.4 103 68.0
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 2.1e-33 146.0 103 68.9
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 2.1e-33 146.0 103 68.9
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 2.1e-33 146.0 103 68.9
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 2.1e-33 146.0 103 68.0
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 2.8e-33 145.6 103 68.0
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 2.8e-33 145.6 103 68.9
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 2.8e-33 145.6 99 69.7
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 3.6e-33 145.2 103 68.9
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 3.6e-33 145.2 103 68.9
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 4.7e-33 144.8 103 67.0
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 4.7e-33 144.8 103 68.0
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 6.2e-33 144.4 103 68.0
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 6.2e-33 144.4 103 68.0
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 6.2e-33 144.4 103 68.9
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 6.2e-33 144.4 103 68.9
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 8.1e-33 144.1 103 68.9
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 8.1e-33 144.1 103 68.0
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 1.1e-32 143.7 103 66.0
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 1.1e-32 143.7 103 66.0
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 1.1e-32 143.7 103 67.0
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 1.4e-32 143.3 84 78.6
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 1.4e-32 143.3 84 78.6
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 1.4e-32 143.3 103 67.0
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.8e-32 142.9 103 68.0
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 1.8e-32 142.9 103 68.0
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 1.8e-32 142.9 103 67.0
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 2.4e-32 142.5 94 72.3
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 2.4e-32 142.5 103 68.9
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 4.0e-32 141.7 103 66.0
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 5.2e-32 141.4 103 67.0
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 6.9e-32 141.0 103 66.0
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 6.9e-32 141.0 103 66.0
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 8.9e-32 140.6 103 65.0
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 8.9e-32 140.6 103 68.0
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 8.9e-32 140.6 98 69.4
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 1.2e-31 140.2 103 65.0
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 1.5e-31 139.8 98 68.4
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 3.4e-31 138.7 98 70.4
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 3.4e-31 138.7 98 70.4
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 3.4e-31 138.7 98 70.4
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 5.8e-31 137.9 98 67.3
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 5.8e-31 137.9 94 70.2
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 5.8e-31 137.9 103 68.0
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 7.6e-31 137.5 103 65.0
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 1.7e-30 136.3 98 67.3
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 1.7e-30 136.3 103 64.1
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 2.2e-30 136.0 101 65.3
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 2.9e-30 135.6 103 64.1
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 4.9e-30 134.8 98 67.3
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 4.9e-30 134.8 98 67.3
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 6.4e-30 134.4 103 63.1
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 8.4e-30 134.0 84 75.0
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 1.1e-29 133.7 98 66.3
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 1.9e-29 132.9 92 71.7
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 2.4e-29 132.5 84 73.8
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 1.6e-28 129.8 103 61.2
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 1.4e-24 116.7 98 57.1
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 9.0e-24 114.0 103 59.2
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.6e-23 112.5 103 54.4
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 2.2e-22 109.4 103 56.3
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 1.1e-21 107.1 103 55.3
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 1.1e-21 107.1 103 55.3
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 3.2e-21 105.5 103 57.3
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 5.4e-21 104.8 103 53.4
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 7.1e-21 104.4 98 59.2
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 2.7e-20 102.4 103 51.5
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 3.5e-20 102.1 103 52.4
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 3.5e-20 102.1 103 53.4
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 6.0e-20 101.3 103 54.4
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 6.0e-20 101.3 103 52.4
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 6.0e-20 101.3 103 52.4
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.0e-19 100.5 78 65.4
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 5.1e-19 98.2 98 54.1
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 5.1e-19 98.2 103 53.4
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 5.1e-19 98.2 103 53.4
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 6.7e-19 97.8 103 51.5
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 6.7e-19 97.8 103 51.5
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 8.7e-19 97.4 103 52.4
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 1.5e-18 96.7 97 54.6
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 1.9e-18 96.3 98 53.1
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 1.9e-18 96.3 103 51.5
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.3e-18 95.5 98 53.1
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.3e-18 95.5 98 53.1
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.3e-18 95.5 98 53.1
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 3.3e-18 95.5 94 55.3
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 4.3e-18 95.1 103 49.5
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 4.3e-18 95.1 97 53.6
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 5.6e-18 94.7 103 50.5
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 5.6e-18 94.7 103 50.5
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 5.6e-18 94.7 103 50.5
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 7.4e-18 94.4 103 49.5
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 2.8e-17 92.4 103 50.5
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 4.8e-17 91.7 103 49.5
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 4.0e-16 88.6 97 50.5
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 4.0e-16 88.6 97 50.5
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 2.6e-15 85.9 98 45.9
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 8.4e-14 80.9 98 44.9
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 3.9e-11 72.0 98 40.8
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 1.5e-10 70.1 84 47.6
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 1.5e-07 60.1 97 37.1


User provided reference genes

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