Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p33680 Brassica napus HOM05D002263 ORTHO05D101288 6.5e-57 223.8 110 100.0
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 6.2e-15 84.3 86 48.8
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 1.4e-14 83.2 86 47.7
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 1.8e-14 82.8 85 49.4
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 2.4e-14 82.4 85 49.4
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 2.4e-14 82.4 85 47.1
C03p05180 Brassica napus HOM05D002263 ORTHO05D003537 5.2e-14 81.3 86 44.2
BolC3t13035H Brassica oleracea HOM05D002263 ORTHO05D003537 5.2e-14 81.3 86 44.2
BcaB01g05530 Brassica carinata HOM05D002263 ORTHO05D003537 6.9e-14 80.9 86 43.0
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 6.9e-14 80.9 86 46.5
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 6.9e-14 80.9 86 46.5
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 6.9e-14 80.9 85 48.2
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 6.9e-14 80.9 85 48.2
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 9.0e-14 80.5 85 45.9
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.2e-13 80.1 86 45.3
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.2e-13 80.1 86 45.3
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 1.2e-13 80.1 85 45.9
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 1.2e-13 80.1 85 47.1
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 1.5e-13 79.7 88 44.3
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 1.5e-13 79.7 85 47.1
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 2.0e-13 79.3 86 45.3
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 2.0e-13 79.3 85 45.9
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 2.0e-13 79.3 85 45.9
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.0e-13 79.3 85 45.9
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.0e-13 79.3 85 45.9
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.0e-13 79.3 85 45.9
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.0e-13 79.3 85 45.9
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 2.6e-13 79.0 85 44.7
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 2.6e-13 79.0 86 44.2
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 2.6e-13 79.0 86 44.2
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 2.6e-13 79.0 86 44.2
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 2.6e-13 79.0 85 45.9
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 2.6e-13 79.0 85 45.9
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 2.6e-13 79.0 86 45.3
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 3.4e-13 78.6 85 44.7
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 3.4e-13 78.6 86 46.5
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 3.4e-13 78.6 95 45.3
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 3.4e-13 78.6 85 44.7
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 3.4e-13 78.6 85 45.9
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 4.4e-13 78.2 83 47.0
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 4.4e-13 78.2 85 47.1
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 4.4e-13 78.2 85 45.9
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 4.4e-13 78.2 85 47.1
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 4.4e-13 78.2 85 47.1
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 4.4e-13 78.2 85 47.1
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 4.4e-13 78.2 85 47.1
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 4.4e-13 78.2 85 47.1
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 4.4e-13 78.2 85 47.1
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 4.4e-13 78.2 85 47.1
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 4.4e-13 78.2 86 45.3
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 4.4e-13 78.2 86 44.2
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 4.4e-13 78.2 85 43.5
Nn7g36258 Nelumbo nucifera HOM05D002263 ORTHO05D003537 4.4e-13 78.2 83 47.0
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 5.8e-13 77.8 85 44.7
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 5.8e-13 77.8 85 44.7
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 5.8e-13 77.8 83 48.2
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 5.8e-13 77.8 85 45.9
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 5.8e-13 77.8 83 48.2
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 5.8e-13 77.8 85 47.1
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 7.6e-13 77.4 86 44.2
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 7.6e-13 77.4 85 44.7
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 7.6e-13 77.4 85 45.9
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 7.6e-13 77.4 85 44.7
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 7.6e-13 77.4 85 45.9
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 7.6e-13 77.4 85 43.5
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 7.6e-13 77.4 85 44.7
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 7.6e-13 77.4 85 44.7
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 7.6e-13 77.4 85 44.7
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 7.6e-13 77.4 85 44.7
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 9.9e-13 77.0 83 47.0
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 9.9e-13 77.0 86 46.5
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 9.9e-13 77.0 85 44.7
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 9.9e-13 77.0 85 44.7
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 9.9e-13 77.0 85 44.7
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 9.9e-13 77.0 86 43.0
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 9.9e-13 77.0 85 44.7
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 9.9e-13 77.0 85 44.7
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 1.3e-12 76.6 85 44.7
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 1.3e-12 76.6 85 43.5
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 1.3e-12 76.6 85 47.1
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 1.3e-12 76.6 85 45.9
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 1.3e-12 76.6 85 45.9
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 1.7e-12 76.3 85 44.7
Lsat_1_v5_gn_5_88760 Lactuca sativa HOM05D002263 ORTHO05D027778 1.7e-12 76.3 79 45.6
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.7e-12 76.3 85 44.7
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 1.7e-12 76.3 86 43.0
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 1.7e-12 76.3 86 43.0
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 2.2e-12 75.9 85 43.5
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 2.2e-12 75.9 85 43.5
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 2.2e-12 75.9 85 44.7
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 2.2e-12 75.9 85 47.1
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 2.9e-12 75.5 83 45.8
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 2.9e-12 75.5 85 47.1
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 2.9e-12 75.5 85 44.7
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 3.8e-12 75.1 85 44.7
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 3.8e-12 75.1 95 43.2
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 3.8e-12 75.1 85 44.7
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 3.8e-12 75.1 85 44.7
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 4.9e-12 74.7 85 45.9
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 4.9e-12 74.7 85 45.9
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 4.9e-12 74.7 85 43.5
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 4.9e-12 74.7 85 43.5
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 4.9e-12 74.7 85 45.9
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 4.9e-12 74.7 85 44.7
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 6.4e-12 74.3 85 44.7
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 6.4e-12 74.3 83 47.0
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 6.4e-12 74.3 85 47.1
AL7G27330 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 8.4e-12 73.9 86 41.9
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 8.4e-12 73.9 85 43.5
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 8.4e-12 73.9 85 44.7
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 8.4e-12 73.9 85 44.7
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 8.4e-12 73.9 85 44.7
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 1.1e-11 73.6 85 44.7
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 1.1e-11 73.6 83 47.0
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 1.4e-11 73.2 85 45.9
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 1.4e-11 73.2 86 44.2
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 1.9e-11 72.8 83 45.8
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 1.9e-11 72.8 83 45.8
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 1.9e-11 72.8 85 44.7
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 2.4e-11 72.4 85 43.5
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 2.4e-11 72.4 85 43.5
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 2.4e-11 72.4 85 43.5
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 3.2e-11 72.0 85 43.5
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 4.2e-11 71.6 83 45.8
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 4.2e-11 71.6 83 45.8
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 4.2e-11 71.6 83 45.8
Sed0003769 Sechium edule HOM05D002263 ORTHO05D003537 5.4e-11 71.2 78 44.9
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 7.1e-11 70.9 85 43.5
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 7.1e-11 70.9 85 47.1
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 1.2e-10 70.1 70 48.6
BolC5t34561H Brassica oleracea HOM05D002263 ORTHO05D003537 1.2e-10 70.1 85 40.0
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 7.8e-10 67.4 86 39.5
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 1.3e-09 66.6 75 44.0
Ah.02g122490 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.7e-09 66.2 88 39.8
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.7e-09 66.2 86 38.4
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 1.7e-09 66.2 88 40.9
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 3.0e-09 65.5 86 38.4
BcaC05g29614 Brassica carinata HOM05D002263 ORTHO05D027778 3.9e-09 65.1 85 36.5
C05p59090 Brassica napus HOM05D002263 ORTHO05D027778 3.9e-09 65.1 85 36.5
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 5.1e-09 64.7 88 39.8
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 5.1e-09 64.7 60 48.3
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 6.6e-09 64.3 88 38.6
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.1e-08 63.5 88 38.6
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 3.3e-08 62.0 85 42.4
RcHm_v2.0_Chr1g0380661 Rosa chinensis HOM05D002263 ORTHO05D003537 3.3e-08 62.0 67 47.8
MD11G1007100 Malus domestica HOM05D002263 ORTHO05D003537 7.3e-08 60.8 94 42.6
Medtr1g075370 Medicago truncatula HOM05D002263 ORTHO05D003537 2.1e-07 59.3 89 41.6
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 6.2e-07 57.8 56 50.0
Medtr1g051315 Medicago truncatula HOM05D002263 ORTHO05D003537 1.1e-06 57.0 72 43.1
PRCOL_00004441 Prasinoderma coloniale HOM05D003944 ORTHO05D005521 1.1e-06 57.0 55 49.1
MELO3C019090.2 Cucumis melo HOM05D003944 ORTHO05D005521 3.1e-06 55.5 77 40.3
Ah.04g150900 Amaranthus hybridus HOM05D003944 ORTHO05D005521 5.3e-06 54.7 58 46.6
AUR62030314 Chenopodium quinoa HOM05D003944 ORTHO05D005521 6.9e-06 54.3 58 44.8
CsaV3_4G029550 Cucumis sativus L. HOM05D003944 ORTHO05D005521 6.9e-06 54.3 77 39.0
Medtr0756s0010 Medicago truncatula HOM05D002263 ORTHO05D003537 6.9e-06 54.3 73 42.5
BcaNung05531 Brassica carinata HOM05D003944 ORTHO05D005521 9.0e-06 53.9 71 40.8
C05p57880 Brassica napus HOM05D003944 ORTHO05D005521 9.0e-06 53.9 71 40.8
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 9.0e-06 53.9 93 34.4


User provided reference genes

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