Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p20220 Brassica napus HOM05D003070 ORTHO05D003567 5.3e-41 170.6 89 100.0
BolC8t49651H Brassica oleracea HOM05D003070 ORTHO05D028052 5.3e-41 170.6 89 100.0
BcaB03g12863 Brassica carinata HOM05D003070 ORTHO05D003567 2.0e-24 115.5 62 96.8
BcaB07g32057 Brassica carinata HOM05D003070 ORTHO05D003567 2.0e-24 115.5 62 96.8
BolC7t42834H Brassica oleracea HOM05D003070 ORTHO05D003567 5.9e-24 114.0 62 95.2
BcaC05g25964 Brassica carinata HOM05D003070 ORTHO05D003567 7.7e-24 113.6 62 95.2
C05p19150 Brassica napus HOM05D003070 ORTHO05D003567 7.7e-24 113.6 62 95.2
BolC5t30615H Brassica oleracea HOM05D003070 ORTHO05D003567 7.7e-24 113.6 62 95.2
A06p16580 Brassica napus HOM05D003070 ORTHO05D003567 1.7e-23 112.5 62 93.5
BraA06t24765Z Brassica rapa HOM05D003070 ORTHO05D003567 1.7e-23 112.5 62 93.5
BcaC07g39041 Brassica carinata HOM05D003070 ORTHO05D003567 2.9e-23 111.7 62 95.2
Sp1g18290 Schrenkiella parvula HOM05D003070 ORTHO05D003567 2.9e-23 111.7 62 93.5
Carub.0001s2007 Capsella rubella HOM05D003070 ORTHO05D003567 2.7e-21 105.1 62 91.9
BNapus_Darmor_BZH_scaffold_170p00090 Brassica napus HOM05D003070 ORTHO05D028052 8.0e-21 103.6 57 94.7
AL1G33520 Arabidopsis lyrata HOM05D003070 ORTHO05D003567 3.0e-20 101.7 63 88.9
CARHR021050 Cardamine hirsuta HOM05D003070 ORTHO05D003567 5.2e-20 100.9 62 88.7
AT1G20580 Arabidopsis thaliana HOM05D003070 ORTHO05D003567 8.8e-20 100.1 63 87.3
AUR62011707 Chenopodium quinoa HOM05D003070 ORTHO05D003567 1.4e-17 92.8 63 81.0
Thhalv10009078m.g Eutrema salsugineum HOM05D003070 ORTHO05D003567 1.4e-17 92.8 67 79.1
AUR62012923 Chenopodium quinoa HOM05D003070 ORTHO05D003567 2.4e-17 92.0 63 81.0
THA.LOC104811465 Tarenaya hassleriana HOM05D003070 ORTHO05D003567 2.0e-16 89.0 63 82.5
MD08G1002200 Malus domestica HOM05D003070 ORTHO05D003567 2.7e-16 88.6 63 77.8
Manes.18G004900 Manihot esculenta HOM05D003070 ORTHO05D003567 3.5e-16 88.2 63 79.4
CANSAT64G1298 Cannabis sativa HOM05D003070 ORTHO05D003567 4.5e-16 87.8 63 81.0
Potri.002G010200 Populus trichocarpa HOM05D003070 ORTHO05D003567 4.5e-16 87.8 64 79.7
Sabra02G0007600 Salix brachista HOM05D003070 ORTHO05D003567 4.5e-16 87.8 64 79.7
Sabra05G0194200 Salix brachista HOM05D003070 ORTHO05D003567 4.5e-16 87.8 64 81.2
Manes.05G133600 Manihot esculenta HOM05D003070 ORTHO05D003567 5.9e-16 87.4 63 77.8
Manes.05G133700 Manihot esculenta HOM05D003070 ORTHO05D003567 5.9e-16 87.4 63 77.8
Sabra05G0194500 Salix brachista HOM05D003070 ORTHO05D003567 5.9e-16 87.4 63 82.5
Potri.005G251100 Populus trichocarpa HOM05D003070 ORTHO05D003567 2.9e-15 85.1 64 78.1
TWI12G0703 Tripterygium wilfordii HOM05D003070 ORTHO05D003567 5.0e-15 84.3 64 76.6
AUR62023608 Chenopodium quinoa HOM05D003070 ORTHO05D003567 6.6e-15 84.0 63 76.2
PGR031G0751 Punica granatum HOM05D003070 ORTHO05D003567 8.6e-15 83.6 64 75.0
MD15G1001300 Malus domestica HOM05D003070 ORTHO05D003567 4.2e-14 81.3 63 73.0
Hund00358 Selenicereus undatus HOM05D003070 ORTHO05D003567 4.2e-14 81.3 63 71.4
TWI56G1280 Tripterygium wilfordii HOM05D003070 ORTHO05D003567 7.2e-14 80.5 64 75.0
Actinidia28603 Actinidia chinensis HOM05D003070 ORTHO05D003567 9.5e-14 80.1 63 69.8
DCAR_009533 Daucus carota HOM05D003070 ORTHO05D003567 1.2e-13 79.7 64 71.9
PSO675G2974 Papaver somniferum HOM05D003070 ORTHO05D003567 3.6e-13 78.2 65 70.8
PSO541G6151 Papaver somniferum HOM05D003070 ORTHO05D003567 1.0e-12 76.6 65 69.2
Sc14g0002430 Simmondsia chinensis HOM05D003070 ORTHO05D003567 1.4e-12 76.3 63 73.0
Cc07_g21140 Coffea canephora HOM05D003070 ORTHO05D003567 3.0e-12 75.1 64 68.8
Cc07_g21150 Coffea canephora HOM05D003070 ORTHO05D003567 3.0e-12 75.1 62 71.0
Actinidia17044 Actinidia chinensis HOM05D003070 ORTHO05D003567 4.0e-12 74.7 64 67.2
ClCG11G018690 Citrullus lanatus HOM05D003070 ORTHO05D003567 4.0e-12 74.7 64 70.3
SEGI_35595 Sequoiadendron giganteum HOM05D003070 ORTHO05D003567 4.0e-12 74.7 65 67.7
CSS0043026 Camellia sinensis var. sinensis HOM05D003070 ORTHO05D003567 1.2e-11 73.2 64 67.2
Cc07_g21100 Coffea canephora HOM05D003070 ORTHO05D003567 1.2e-11 73.2 61 70.5
A07p15600 Brassica napus HOM05D003070 ORTHO05D028052 2.0e-11 72.4 61 68.9
BraA07t29299Z Brassica rapa HOM05D003070 ORTHO05D028052 2.0e-11 72.4 61 68.9
C07p22950 Brassica napus HOM05D003070 ORTHO05D003567 2.6e-11 72.0 40 90.0
TWI36G0363 Tripterygium wilfordii HOM05D003070 ORTHO05D003567 1.3e-10 69.7 64 67.2
Eucgr.C04084 Eucalyptus grandis HOM05D003070 ORTHO05D003567 1.8e-09 65.9 64 64.1
EL10Ac9g21252 Beta vulgaris HOM05D003070 ORTHO05D003567 2.4e-09 65.5 63 61.9
Os02g0102700 Oryza sativa ssp. japonica HOM05D003070 ORTHO05D003567 2.4e-09 65.5 64 60.9
Os03g0240800 Oryza sativa ssp. japonica HOM05D003070 ORTHO05D003567 2.4e-09 65.5 64 60.9
SGA_v2.0_scaffold69G23095 Striga asiatica HOM05D003070 ORTHO05D003567 2.4e-09 65.5 65 60.0
AUR62004691 Chenopodium quinoa HOM05D003070 ORTHO05D003567 3.1e-09 65.1 61 62.3
RcHm_v2.0_Chr6g0304391 Rosa chinensis HOM05D003070 ORTHO05D003567 3.1e-09 65.1 63 61.9
Medtr8g092200 Medicago truncatula HOM05D003070 ORTHO05D003567 5.4e-09 64.3 63 63.5
Psat7g049720 Pisum sativum HOM05D003070 ORTHO05D003567 5.4e-09 64.3 63 63.5
TPR.G2168 Trifolium pratense HOM05D003070 ORTHO05D003567 5.4e-09 64.3 63 63.5
CANSAT25G0152 Cannabis sativa HOM05D003070 ORTHO05D003567 7.0e-09 63.9 63 61.9
Prupe.1G353900 Prunus persica HOM05D003070 ORTHO05D003567 7.0e-09 63.9 63 60.3
unitig_22.g6031 Utricularia gibba HOM05D001030 ORTHO05D002278 9.2e-09 63.5 64 62.5
SGA_v2.0_scaffold105G30448 Striga asiatica HOM05D003070 ORTHO05D003567 1.2e-08 63.2 71 57.7
Lj3g0021732 Lotus japonicus HOM05D003070 ORTHO05D003567 2.0e-08 62.4 64 64.1
CAN.G1671.3 Capsicum annuum HOM05D003070 ORTHO05D003567 3.5e-08 61.6 71 56.3
Sp5g31440 Schrenkiella parvula HOM05D003070 ORTHO05D003567 3.5e-08 61.6 63 60.3
HPP92_022158 Vanilla planifolia HOM05D003070 ORTHO05D003567 3.5e-08 61.6 63 58.7
Oeu008125.2 Olea europaea HOM05D003070 ORTHO05D003567 4.5e-08 61.2 43 74.4
QL02p014285 Quercus lobata HOM05D003070 ORTHO05D003567 5.9e-08 60.8 63 60.3
unitig_8.g3513 Utricularia gibba HOM05D001030 ORTHO05D003567 5.9e-08 60.8 64 60.9
Atru.chr13.140 Acer truncatum HOM05D003070 ORTHO05D003567 7.8e-08 60.5 64 60.9
Lalb_Chr23g0265771 Lupinus albus HOM05D003070 ORTHO05D003567 1.0e-07 60.1 63 58.7
ATR0661G400 Amborella trichopoda HOM05D003070 ORTHO05D003567 1.3e-07 59.7 65 60.0
Dinv31947 Davidia involucrata HOM05D003070 ORTHO05D003567 1.7e-07 59.3 64 59.4
Migut.K00070 Erythranthe guttata HOM05D003070 ORTHO05D003567 1.7e-07 59.3 65 60.0
Gohir.A02G084600 Gossypium hirsutum HOM05D003070 ORTHO05D003567 1.7e-07 59.3 64 60.9
Gorai.005G113900 Gossypium raimondii HOM05D003070 ORTHO05D003567 1.7e-07 59.3 64 60.9
Sed0009612 Sechium edule HOM05D003070 ORTHO05D003567 1.7e-07 59.3 71 56.3
Aqoxy5G01037 Aquilegia oxysepala HOM05D003070 ORTHO05D003567 2.3e-07 58.9 64 60.9
CiPaw.07G138300 Carya illinoinensis HOM05D003070 ORTHO05D003567 2.3e-07 58.9 64 59.4
Ciclev10002830m.g Citrus clementina HOM05D003070 ORTHO05D003567 2.3e-07 58.9 64 59.4
Duzib116G0833 Durio zibethinus HOM05D003070 ORTHO05D003567 2.3e-07 58.9 63 61.9
THA.LOC104809773 Tarenaya hassleriana HOM05D003070 ORTHO05D003567 2.3e-07 58.9 63 58.7
Actinidia37920 Actinidia chinensis HOM05D003070 ORTHO05D003567 2.9e-07 58.5 71 52.1
Cfa014085 Carpinus fangiana HOM05D003070 ORTHO05D003567 2.9e-07 58.5 64 59.4
CiPaw.08G073600 Carya illinoinensis HOM05D003070 ORTHO05D003567 2.9e-07 58.5 64 59.4
COL.COLO4_05221 Corchorus olitorius HOM05D003070 ORTHO05D003567 2.9e-07 58.5 63 58.7
COL.COLO4_28635 Corchorus olitorius HOM05D003070 ORTHO05D003567 2.9e-07 58.5 64 59.4
Haze_22786 Corylus avellana HOM05D003070 ORTHO05D003567 2.9e-07 58.5 64 59.4
FvH4_2g37310 Fragaria vesca HOM05D003070 ORTHO05D003567 2.9e-07 58.5 63 58.7
FAN27G0967 Fragaria x ananassa HOM05D003070 ORTHO05D003567 2.9e-07 58.5 63 58.7
Zm00001eb229320 Zea mays HOM05D003070 ORTHO05D003567 2.9e-07 58.5 43 67.4
Cpa.g.sc801.3 Carica papaya HOM05D003070 ORTHO05D003567 3.9e-07 58.2 64 59.4
Gohir.D02G100500 Gossypium hirsutum HOM05D003070 ORTHO05D003567 3.9e-07 58.2 64 59.4
MBI05_g07853_MAGBIO Magnolia biondii HOM05D003070 ORTHO05D003567 3.9e-07 58.2 71 54.9
arahy.Tifrunner.gnm1.ann1.NVS6IC Arachis hypogaea HOM05D003070 ORTHO05D003567 5.0e-07 57.8 62 58.1
arahy.Tifrunner.gnm1.ann1.SVUP05 Arachis hypogaea HOM05D003070 ORTHO05D003567 5.0e-07 57.8 62 58.1
Dinv05529 Davidia involucrata HOM05D003070 ORTHO05D003567 5.0e-07 57.8 64 59.4
FAN15G2035 Fragaria x ananassa HOM05D003070 ORTHO05D003567 5.0e-07 57.8 61 59.0
Duzib041G0259 Durio zibethinus HOM05D003070 ORTHO05D003567 8.6e-07 57.0 64 59.4
Lalb_Chr08g0246401 Lupinus albus HOM05D003070 ORTHO05D003567 8.6e-07 57.0 64 60.9
Gohir.A01G105400 Gossypium hirsutum HOM05D003070 ORTHO05D003567 1.1e-06 56.6 64 57.8
Gohir.D01G091700 Gossypium hirsutum HOM05D003070 ORTHO05D003567 1.1e-06 56.6 64 57.8
Gorai.002G116800 Gossypium raimondii HOM05D003070 ORTHO05D003567 1.1e-06 56.6 64 57.8
Migut.J01784 Erythranthe guttata HOM05D003070 ORTHO05D003567 1.5e-06 56.2 65 56.9
Glyma.05G185800 Glycine max HOM05D003070 ORTHO05D003567 1.5e-06 56.2 63 57.1
Glyma.08G143900 Glycine max HOM05D003070 ORTHO05D003567 1.5e-06 56.2 63 57.1
Phvul.002G266900 Phaseolus vulgaris HOM05D003070 ORTHO05D003567 1.5e-06 56.2 63 57.1
VMungo0251G1496 Vigna mungo HOM05D003070 ORTHO05D003567 1.5e-06 56.2 63 57.1
Ah.01g023690 Amaranthus hybridus HOM05D003070 ORTHO05D003567 1.9e-06 55.8 62 54.8
Oeu033775.1 Olea europaea HOM05D003070 ORTHO05D003567 1.9e-06 55.8 64 57.8
MSTRG.26110 Avicennia marina HOM05D003070 ORTHO05D003567 3.3e-06 55.1 71 52.1
Duzib093G1878 Durio zibethinus HOM05D003070 ORTHO05D003567 3.3e-06 55.1 64 57.8
Nn5g30951 Nelumbo nucifera HOM05D003070 ORTHO05D003567 3.3e-06 55.1 64 57.8
Thecc.08G059700 Theobroma cacao HOM05D003070 ORTHO05D003567 3.3e-06 55.1 64 57.8
Zm00001eb399040 Zea mays HOM05D003070 ORTHO05D003567 3.3e-06 55.1 64 50.0
Aa31LG4G6390 Aethionema arabicum HOM05D003070 ORTHO05D003567 4.3e-06 54.7 63 55.6
Gohir.A10G117532 Gossypium hirsutum HOM05D003070 ORTHO05D003567 4.3e-06 54.7 61 60.7
MELO3C017020.2 Cucumis melo HOM05D003070 ORTHO05D003567 5.6e-06 54.3 64 57.8
Solyc02g084020.3 Solanum lycopersicum HOM05D003070 ORTHO05D003567 5.6e-06 54.3 64 56.2
Sopen02g028820 Solanum pennellii HOM05D003070 ORTHO05D003567 5.6e-06 54.3 64 56.2
PGSC0003DMG400003559 Solanum tuberosum HOM05D003070 ORTHO05D003567 5.6e-06 54.3 64 56.2
Zm00001eb010240 Zea mays HOM05D003070 ORTHO05D003567 5.6e-06 54.3 64 50.0
CDE05G1714 Ceratophyllum demersum HOM05D003070 ORTHO05D003567 7.3e-06 53.9 64 56.2
CDE05G3019 Ceratophyllum demersum HOM05D003070 ORTHO05D003567 7.3e-06 53.9 64 56.2
Ca_17677_v3 Cicer arietinum L. HOM05D003070 ORTHO05D003567 7.3e-06 53.9 61 57.4
Ca_29603_v3 Cicer arietinum L. HOM05D003070 ORTHO05D003567 7.3e-06 53.9 61 57.4
Lj4A805T23 Lonicera japonica HOM05D003070 ORTHO05D003567 7.3e-06 53.9 64 56.2
Nitab4.5_0004254g0060 Nicotiana tabacum HOM05D003070 ORTHO05D003567 7.3e-06 53.9 65 55.4
Peaxi162Scf00010g00029 Petunia axillaris HOM05D003070 ORTHO05D003567 7.3e-06 53.9 64 54.7
TAR381G1070 Trochodendron aralioides HOM05D003070 ORTHO05D003567 7.3e-06 53.9 64 56.2
TAR628G0460 Trochodendron aralioides HOM05D003070 ORTHO05D003567 7.3e-06 53.9 64 56.2
GSVIVG01013364001 Vitis vinifera HOM05D003070 ORTHO05D003567 7.3e-06 53.9 64 56.2
Lsat_1_v5_gn_2_4001 Lactuca sativa HOM05D003070 ORTHO05D003567 9.5e-06 53.5 32 75.0
Peaxi162Scf00439g01010 Petunia axillaris HOM05D003070 ORTHO05D003567 9.5e-06 53.5 64 54.7


User provided reference genes

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