Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p12200 Brassica napus HOM05D003391 ORTHO05D014971 2.5e-74 282.0 136 100.0
BolC8t48861H Brassica oleracea HOM05D003391 ORTHO05D014971 2.5e-74 282.0 136 100.0
C05p42470 Brassica napus HOM05D003391 ORTHO05D014971 2.2e-70 268.9 138 95.7
BolC7t43185H Brassica oleracea HOM05D003391 ORTHO05D014971 1.1e-69 266.5 138 95.7
BolC3t14904H Brassica oleracea HOM05D003391 ORTHO05D014971 1.3e-67 259.6 142 90.8
C01p37660 Brassica napus HOM05D003391 ORTHO05D014971 3.3e-66 255.0 139 92.1
BcaC07g38452 Brassica carinata HOM05D040375 ORTHO05D014971 3.8e-30 135.2 79 84.8
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 2.1e-28 129.4 64 96.9
BraA09t38477Z Brassica rapa HOM05D003391 ORTHO05D014971 1.0e-22 110.5 57 87.7
C04p29410 Brassica napus HOM05D003391 ORTHO05D014971 3.6e-20 102.1 61 78.7
BcaB06g26410 Brassica carinata HOM05D000705 ORTHO05D013251 5.0e-14 81.6 99 49.5
BcaB06g26412 Brassica carinata HOM05D000705 ORTHO05D013251 5.0e-14 81.6 99 49.5
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 2.7e-12 75.9 94 44.7
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 4.7e-12 75.1 99 44.4
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 4.7e-12 75.1 99 44.4
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 4.7e-12 75.1 99 44.4
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 4.7e-12 75.1 99 44.4
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 4.7e-12 75.1 99 44.4
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 4.7e-12 75.1 99 44.4
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 4.7e-12 75.1 99 44.4
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 4.7e-12 75.1 99 44.4
CARHR040520 Cardamine hirsuta HOM05D003391 ORTHO05D005563 4.7e-12 75.1 99 44.4
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 4.7e-12 75.1 92 45.7
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 4.7e-12 75.1 96 43.8
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 4.7e-12 75.1 96 43.8
Ciclev10028552m.g Citrus clementina HOM05D003391 ORTHO05D005563 6.1e-12 74.7 97 43.3
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 6.1e-12 74.7 94 45.7
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 6.1e-12 74.7 94 45.7
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 6.1e-12 74.7 94 45.7
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 7.9e-12 74.3 94 44.7
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 1.0e-11 73.9 95 44.2
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 1.0e-11 73.9 95 44.2
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 1.0e-11 73.9 97 43.3
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 1.4e-11 73.6 99 43.4
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 1.4e-11 73.6 99 43.4
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 1.4e-11 73.6 94 44.7
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 1.4e-11 73.6 94 44.7
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 1.4e-11 73.6 94 44.7
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 1.4e-11 73.6 99 43.4
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.4e-11 73.6 94 45.7
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.4e-11 73.6 94 45.7
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 1.4e-11 73.6 94 43.6
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 1.8e-11 73.2 97 43.3
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 1.8e-11 73.2 97 43.3
Thhalv10012404m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 2.3e-11 72.8 99 43.4
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 2.3e-11 72.8 95 44.2
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 2.3e-11 72.8 99 43.4
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 2.3e-11 72.8 95 44.2
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 3.0e-11 72.4 100 42.0
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 3.9e-11 72.0 95 43.2
C09p36290 Brassica napus HOM05D003391 ORTHO05D040219 5.1e-11 71.6 102 44.1
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 5.1e-11 71.6 99 43.4
BolC9t56466H Brassica oleracea HOM05D003391 ORTHO05D040219 5.1e-11 71.6 102 44.1
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 5.1e-11 71.6 94 43.6
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 5.1e-11 71.6 99 42.4
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 5.1e-11 71.6 96 43.8
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 5.1e-11 71.6 96 43.8
PGSC0003DMG402012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 5.1e-11 71.6 96 43.8
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 6.7e-11 71.2 100 41.0
Dinv04581 Davidia involucrata HOM05D003391 ORTHO05D005563 6.7e-11 71.2 89 46.1
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 6.7e-11 71.2 97 42.3
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 8.8e-11 70.9 98 42.9
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 8.8e-11 70.9 99 42.4
CAN.G5179.1 Capsicum annuum HOM05D003391 ORTHO05D005563 8.8e-11 70.9 99 42.4
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 8.8e-11 70.9 99 42.4
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 8.8e-11 70.9 97 42.3
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 8.8e-11 70.9 99 42.4
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 8.8e-11 70.9 96 42.7
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 1.1e-10 70.5 98 41.8
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 1.1e-10 70.5 98 41.8
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 1.1e-10 70.5 95 43.2
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 1.1e-10 70.5 99 42.4
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 1.1e-10 70.5 99 42.4
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 1.5e-10 70.1 96 42.7
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 1.5e-10 70.1 96 42.7
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 1.5e-10 70.1 97 41.2
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.5e-10 70.1 97 41.2
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.5e-10 70.1 97 41.2
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.5e-10 70.1 97 41.2
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.5e-10 70.1 97 41.2
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 1.5e-10 70.1 99 41.4
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 1.5e-10 70.1 97 42.3
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 1.5e-10 70.1 97 42.3
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 2.0e-10 69.7 97 42.3
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 2.0e-10 69.7 97 42.3
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 2.6e-10 69.3 97 42.3
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 2.6e-10 69.3 97 42.3
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 3.3e-10 68.9 96 42.7
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 3.3e-10 68.9 99 41.4
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 3.3e-10 68.9 124 39.5
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 5.7e-10 68.2 97 42.3
Haze_17876 Corylus avellana HOM05D003391 ORTHO05D005563 5.7e-10 68.2 97 42.3
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 5.7e-10 68.2 100 41.0
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 5.7e-10 68.2 99 41.4
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 5.7e-10 68.2 97 41.2
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 5.7e-10 68.2 100 40.0
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 5.7e-10 68.2 97 41.2
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 7.4e-10 67.8 100 40.0
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 7.4e-10 67.8 100 40.0
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 7.4e-10 67.8 100 40.0
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 7.4e-10 67.8 100 40.0
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 7.4e-10 67.8 100 40.0
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 7.4e-10 67.8 100 40.0
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 7.4e-10 67.8 98 39.8
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 1.3e-09 67.0 96 41.7
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 1.7e-09 66.6 97 41.2
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 1.7e-09 66.6 99 42.4
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 1.7e-09 66.6 101 40.6
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 2.2e-09 66.2 100 40.0
MBI18_g28219_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 2.2e-09 66.2 97 41.2
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 3.7e-09 65.5 97 40.2
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 4.8e-09 65.1 98 40.8
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 4.8e-09 65.1 103 40.8
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 8.2e-09 64.3 105 38.1
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.1e-08 63.9 98 39.8
Actinidia03950 Actinidia chinensis HOM05D003391 ORTHO05D005563 1.8e-08 63.2 98 39.8
Os01g0906200 Oryza sativa ssp. japonica HOM05D003391 ORTHO05D005563 3.1e-08 62.4 108 36.1
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 7.0e-08 61.2 101 39.6
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 7.0e-08 61.2 91 39.6
HPP92_006005 Vanilla planifolia HOM05D003391 ORTHO05D005563 7.0e-08 61.2 106 36.8
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.2e-07 60.5 99 39.4
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 1.2e-07 60.5 112 34.8
THA.LOC104809626 Tarenaya hassleriana HOM05D002609 ORTHO05D002820 1.5e-07 60.1 43 74.4
Lj7A654G26 Lonicera japonica HOM05D003391 ORTHO05D005563 2.6e-07 59.3 105 36.2
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 2.6e-07 59.3 91 39.6
Cpa.g.sc3.400 Carica papaya HOM05D002609 ORTHO05D002820 4.5e-07 58.5 43 72.1
SEGI_03483 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 5.9e-07 58.2 92 35.9
SEGI_21663 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 5.9e-07 58.2 95 34.7
AL3G31150 Arabidopsis lyrata HOM05D002609 ORTHO05D002820 1.0e-06 57.4 43 72.1
AT3G18000 Arabidopsis thaliana HOM05D002609 ORTHO05D002820 1.0e-06 57.4 43 72.1
Carub.0003s1771 Capsella rubella HOM05D002609 ORTHO05D002820 1.0e-06 57.4 43 72.1
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 1.0e-06 57.4 114 33.3
Aa31LG8G4850 Aethionema arabicum HOM05D002609 ORTHO05D002820 1.3e-06 57.0 43 72.1
BcaB04g20116 Brassica carinata HOM05D003391 ORTHO05D013251 1.3e-06 57.0 86 41.9
CARHR093310 Cardamine hirsuta HOM05D002609 ORTHO05D002820 1.3e-06 57.0 43 72.1
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 1.3e-06 57.0 90 38.9
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 1.3e-06 57.0 97 37.1
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 1.3e-06 57.0 111 34.2
Thhalv10020595m.g Eutrema salsugineum HOM05D002609 ORTHO05D002820 1.7e-06 56.6 43 72.1
Sp3g16110 Schrenkiella parvula HOM05D002609 ORTHO05D002820 1.7e-06 56.6 43 72.1
Carub.0001s3771 Capsella rubella HOM05D002609 ORTHO05D002820 2.9e-06 55.8 46 65.2
Aqoxy3G00070 Aquilegia oxysepala HOM05D002609 ORTHO05D002820 3.8e-06 55.5 43 69.8
Aqoxy4G00556 Aquilegia oxysepala HOM05D002609 ORTHO05D002820 3.8e-06 55.5 43 69.8
THA.LOC104798729 Tarenaya hassleriana HOM05D002609 ORTHO05D002820 5.0e-06 55.1 43 67.4
THA.LOC104814039 Tarenaya hassleriana HOM05D002609 ORTHO05D002820 5.0e-06 55.1 43 67.4
AT1G48600 Arabidopsis thaliana HOM05D002609 ORTHO05D002820 6.5e-06 54.7 43 67.4
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 6.5e-06 54.7 93 38.7
BcaB06g25865 Brassica carinata HOM05D002609 ORTHO05D002820 8.5e-06 54.3 43 67.4
A05p31830 Brassica napus HOM05D002609 ORTHO05D002820 8.5e-06 54.3 43 67.4
C05p48320 Brassica napus HOM05D002609 ORTHO05D002820 8.5e-06 54.3 43 67.4
BraA05t22014Z Brassica rapa HOM05D002609 ORTHO05D002820 8.5e-06 54.3 43 67.4
Manes.14G171000 Manihot esculenta HOM05D002609 ORTHO05D002820 8.5e-06 54.3 43 67.4


User provided reference genes

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