Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p09660 Brassica napus HOM05D003335 ORTHO05D003853 7.0e-56 220.3 106 100.0
BolC2t08566H Brassica oleracea HOM05D003335 ORTHO05D003853 4.2e-53 211.1 106 96.2
A08p36890 Brassica napus HOM05D003335 ORTHO05D003853 2.2e-25 119.0 104 60.6
A10p02930 Brassica napus HOM05D003335 ORTHO05D003853 2.2e-25 119.0 104 60.6
C05p02680 Brassica napus HOM05D003335 ORTHO05D003853 2.2e-25 119.0 104 60.6
BolC5t29049H Brassica oleracea HOM05D003335 ORTHO05D003853 2.2e-25 119.0 104 60.6
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 2.2e-25 119.0 104 60.6
BraA10t42562Z Brassica rapa HOM05D003335 ORTHO05D003853 2.2e-25 119.0 104 60.6
CARHR003850 Cardamine hirsuta HOM05D003335 ORTHO05D003853 4.9e-25 117.9 104 59.6
Thhalv10007366m.g Eutrema salsugineum HOM05D003335 ORTHO05D003853 4.9e-25 117.9 104 59.6
Carub.0001s0372 Capsella rubella HOM05D003335 ORTHO05D003853 1.4e-24 116.3 104 58.7
Sp1g03340 Schrenkiella parvula HOM05D003335 ORTHO05D003853 3.2e-24 115.2 104 58.7
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 4.1e-24 114.8 104 58.7
AL1G14160 Arabidopsis lyrata HOM05D003335 ORTHO05D003853 5.4e-24 114.4 104 57.7
BcaC07g36904 Brassica carinata HOM05D003335 ORTHO05D003853 5.4e-24 114.4 104 59.6
THA.LOC104801067 Tarenaya hassleriana HOM05D003335 ORTHO05D003853 2.0e-23 112.5 104 56.7
THA.LOC104816006 Tarenaya hassleriana HOM05D003335 ORTHO05D003853 7.8e-23 110.5 104 54.8
Aa31LG1G20360 Aethionema arabicum HOM05D003335 ORTHO05D003853 1.3e-22 109.8 90 61.1
Gohir.D09G228600 Gossypium hirsutum HOM05D003335 ORTHO05D003853 1.3e-22 109.8 96 57.3
Gorai.006G251300 Gossypium raimondii HOM05D003335 ORTHO05D003853 1.3e-22 109.8 96 57.3
Sabra08G0131000 Salix brachista HOM05D003335 ORTHO05D003853 1.3e-22 109.8 98 56.1
Thecc.04G263400 Theobroma cacao HOM05D003335 ORTHO05D003853 1.7e-22 109.4 96 56.2
COL.COLO4_15958 Corchorus olitorius HOM05D003335 ORTHO05D003853 2.3e-22 109.0 96 56.2
Gohir.A09G227600 Gossypium hirsutum HOM05D003335 ORTHO05D003853 2.3e-22 109.0 96 57.3
Gohir.D02G048300 Gossypium hirsutum HOM05D003335 ORTHO05D003853 3.0e-22 108.6 89 61.8
AT1G04510 Arabidopsis thaliana HOM05D003335 ORTHO05D003853 3.9e-22 108.2 105 55.2
Duzib052G0269 Durio zibethinus HOM05D003335 ORTHO05D003853 5.0e-22 107.8 96 56.2
Duzib151G0619 Durio zibethinus HOM05D003335 ORTHO05D003853 5.0e-22 107.8 96 56.2
Gohir.A02G042700 Gossypium hirsutum HOM05D003335 ORTHO05D003853 6.6e-22 107.5 89 60.7
Gorai.005G053600 Gossypium raimondii HOM05D003335 ORTHO05D003853 6.6e-22 107.5 89 60.7
Potri.010G066000 Populus trichocarpa HOM05D003335 ORTHO05D003853 8.6e-22 107.1 96 56.2
PGR004G0877 Punica granatum HOM05D003335 ORTHO05D003853 8.6e-22 107.1 96 57.3
Potri.008G171600 Populus trichocarpa HOM05D003335 ORTHO05D003853 1.1e-21 106.7 96 55.2
Nitab4.5_0002751g0050 Nicotiana tabacum HOM05D003335 ORTHO05D003853 1.5e-21 106.3 96 55.2
Sp4g15650 Schrenkiella parvula HOM05D003335 ORTHO05D003853 1.5e-21 106.3 104 54.8
PGSC0003DMG400017196 Solanum tuberosum HOM05D003335 ORTHO05D003853 1.5e-21 106.3 96 55.2
Manes.03G159500 Manihot esculenta HOM05D003335 ORTHO05D003853 1.9e-21 105.9 101 54.5
PGSC0003DMG400029342 Solanum tuberosum HOM05D003335 ORTHO05D003853 1.9e-21 105.9 96 56.2
TAR362G1317 Trochodendron aralioides HOM05D003335 ORTHO05D003853 1.9e-21 105.9 96 55.2
Aa31LG5G3970 Aethionema arabicum HOM05D003335 ORTHO05D003853 2.5e-21 105.5 96 56.2
BcaB06g28676 Brassica carinata HOM05D003335 ORTHO05D003853 2.5e-21 105.5 104 54.8
BcaC02g07839 Brassica carinata HOM05D003335 ORTHO05D003853 2.5e-21 105.5 104 54.8
BcaC02g10401 Brassica carinata HOM05D003335 ORTHO05D003853 2.5e-21 105.5 89 64.0
A04p25630 Brassica napus HOM05D003335 ORTHO05D003853 2.5e-21 105.5 104 54.8
C04p62760 Brassica napus HOM05D003335 ORTHO05D003853 2.5e-21 105.5 104 54.8
BolC4t27760H Brassica oleracea HOM05D003335 ORTHO05D003853 2.5e-21 105.5 104 54.8
BraA04t18067Z Brassica rapa HOM05D003335 ORTHO05D003853 2.5e-21 105.5 104 54.8
CAN.G220.75 Capsicum annuum HOM05D003335 ORTHO05D003853 2.5e-21 105.5 96 55.2
Gorai.002G026500 Gossypium raimondii HOM05D003335 ORTHO05D003853 2.5e-21 105.5 96 55.2
Carub.0004s1496 Capsella rubella HOM05D003335 ORTHO05D003853 3.3e-21 105.1 104 54.8
HanXRQChr01g0022981 Helianthus annuus HOM05D003335 ORTHO05D003853 3.3e-21 105.1 96 54.2
AUR62035089 Chenopodium quinoa HOM05D003335 ORTHO05D003853 4.3e-21 104.8 104 51.9
Gohir.D01G023421 Gossypium hirsutum HOM05D003335 ORTHO05D003853 4.3e-21 104.8 96 55.2
Lsat_1_v5_gn_1_75641 Lactuca sativa HOM05D003335 ORTHO05D003853 4.3e-21 104.8 96 54.2
Manes.15G045400 Manihot esculenta HOM05D003335 ORTHO05D003853 4.3e-21 104.8 101 53.5
Nitab4.5_0000194g0280 Nicotiana tabacum HOM05D003335 ORTHO05D003853 4.3e-21 104.8 96 54.2
Solyc09g090660.3 Solanum lycopersicum HOM05D003335 ORTHO05D003853 4.3e-21 104.8 96 54.2
Sopen09g033600 Solanum pennellii HOM05D003335 ORTHO05D003853 4.3e-21 104.8 96 54.2
Hma1.2p1_0112F.1_g054690 Hydrangea macrophylla HOM05D003335 ORTHO05D003853 5.6e-21 104.4 96 54.2
BcaC02g11420 Brassica carinata HOM05D003335 ORTHO05D003853 7.3e-21 104.0 104 52.9
A05p12180 Brassica napus HOM05D003335 ORTHO05D003853 7.3e-21 104.0 104 52.9
C04p15750 Brassica napus HOM05D003335 ORTHO05D003853 7.3e-21 104.0 104 52.9
BolC4t23145H Brassica oleracea HOM05D003335 ORTHO05D003853 7.3e-21 104.0 104 52.9
BraA05t20162Z Brassica rapa HOM05D003335 ORTHO05D003853 7.3e-21 104.0 104 52.9
Gohir.A01G025900 Gossypium hirsutum HOM05D003335 ORTHO05D003853 7.3e-21 104.0 96 54.2
Nitab4.5_0011782g0010 Nicotiana tabacum HOM05D003335 ORTHO05D003853 7.3e-21 104.0 96 54.2
Hund11936 Selenicereus undatus HOM05D003335 ORTHO05D003853 7.3e-21 104.0 104 51.9
Atru.chr4.1923 Acer truncatum HOM05D003335 ORTHO05D003853 9.5e-21 103.6 100 52.0
EL10Ac3g04947 Beta vulgaris HOM05D003335 ORTHO05D003853 9.5e-21 103.6 104 52.9
CSS0033617 Camellia sinensis var. sinensis HOM05D003335 ORTHO05D003853 9.5e-21 103.6 96 54.2
CARHR127340 Cardamine hirsuta HOM05D003335 ORTHO05D003853 9.5e-21 103.6 104 52.9
CiPaw.01G178600 Carya illinoinensis HOM05D003335 ORTHO05D003853 9.5e-21 103.6 96 53.1
Sabra10G0041200 Salix brachista HOM05D003335 ORTHO05D003853 9.5e-21 103.6 95 54.7
Ciclev10004724m.g Citrus clementina HOM05D003335 ORTHO05D003853 1.2e-20 103.2 99 51.5
Cc03_g06250 Coffea canephora HOM05D003335 ORTHO05D003853 1.2e-20 103.2 96 53.1
Peaxi162Scf00169g00225 Petunia axillaris HOM05D003335 ORTHO05D003853 1.2e-20 103.2 96 55.2
CSS0025065 Camellia sinensis var. sinensis HOM05D003335 ORTHO05D003853 1.6e-20 102.8 96 53.1
ECA248G3697 Erigeron canadensis HOM05D003335 ORTHO05D003853 1.6e-20 102.8 96 54.2
MSTRG.4169 Avicennia marina HOM05D003335 ORTHO05D003853 2.1e-20 102.4 97 51.5
Dinv27109 Davidia involucrata HOM05D003335 ORTHO05D003853 2.1e-20 102.4 96 53.1
Dinv29806 Davidia involucrata HOM05D003335 ORTHO05D003853 2.8e-20 102.1 104 51.9
Prupe.1G047500 Prunus persica HOM05D003335 ORTHO05D003853 2.8e-20 102.1 96 53.1
RcHm_v2.0_Chr4g0395291 Rosa chinensis HOM05D003335 ORTHO05D003853 2.8e-20 102.1 104 51.9
GSVIVG01027911001 Vitis vinifera HOM05D003335 ORTHO05D003853 2.8e-20 102.1 96 53.1
DCAR_024291 Daucus carota HOM05D003335 ORTHO05D003853 3.6e-20 101.7 96 54.2
MD13G1220800 Malus domestica HOM05D003335 ORTHO05D003853 3.6e-20 101.7 97 52.6
Nn7g38170 Nelumbo nucifera HOM05D003335 ORTHO05D003853 3.6e-20 101.7 96 52.1
PSO832G0093 Papaver somniferum HOM05D003335 ORTHO05D003853 3.6e-20 101.7 96 54.2
Aqoxy2G03744 Aquilegia oxysepala HOM05D003335 ORTHO05D003853 4.7e-20 101.3 98 51.0
CANSAT78G1065 Cannabis sativa HOM05D003335 ORTHO05D003853 4.7e-20 101.3 97 51.5
Haze_11454 Corylus avellana HOM05D003335 ORTHO05D003853 4.7e-20 101.3 95 52.6
Lalb_Chr19g0128501 Lupinus albus HOM05D003335 ORTHO05D003853 4.7e-20 101.3 97 51.5
ATR0787G209 Amborella trichopoda HOM05D003335 ORTHO05D003853 6.2e-20 100.9 104 48.1
A01p26790 Brassica napus HOM05D003335 ORTHO05D097113 6.2e-20 100.9 50 88.0
Glyma.20G084500 Glycine max HOM05D003335 ORTHO05D003853 6.2e-20 100.9 97 52.6
Lalb_Chr01g0020321 Lupinus albus HOM05D003335 ORTHO05D003853 6.2e-20 100.9 67 65.7
MD16G1225900 Malus domestica HOM05D003335 ORTHO05D003853 6.2e-20 100.9 96 53.1
TWI73G0008 Tripterygium wilfordii HOM05D003335 ORTHO05D003853 6.2e-20 100.9 104 50.0
Ah.04g155250 Amaranthus hybridus HOM05D003335 ORTHO05D003853 8.1e-20 100.5 96 51.0
ClCG05G004030 Citrullus lanatus HOM05D003335 ORTHO05D003853 8.1e-20 100.5 96 50.0
MELO3C006381.2 Cucumis melo HOM05D003335 ORTHO05D003853 8.1e-20 100.5 96 51.0
CsaV3_3G011740 Cucumis sativus L. HOM05D003335 ORTHO05D003853 8.1e-20 100.5 96 51.0
FvH4_4g04520 Fragaria vesca HOM05D003335 ORTHO05D003853 8.1e-20 100.5 104 51.0
FAN12G3742 Fragaria x ananassa HOM05D003335 ORTHO05D003853 8.1e-20 100.5 104 51.0
FAN17G2432 Fragaria x ananassa HOM05D003335 ORTHO05D003853 8.1e-20 100.5 104 51.0
FAN22G1996 Fragaria x ananassa HOM05D003335 ORTHO05D003853 8.1e-20 100.5 104 51.0
HanXRQChr11g0342461 Helianthus annuus HOM05D003335 ORTHO05D003853 8.1e-20 100.5 96 51.0
Sed0027455 Sechium edule HOM05D003335 ORTHO05D003853 8.1e-20 100.5 96 52.1
TAR365G0561 Trochodendron aralioides HOM05D003335 ORTHO05D003853 8.1e-20 100.5 96 52.1
HPP92_007255 Vanilla planifolia HOM05D003335 ORTHO05D003853 8.1e-20 100.5 96 49.0
arahy.Tifrunner.gnm1.ann1.0Y6UED Arachis hypogaea HOM05D003335 ORTHO05D003853 1.1e-19 100.1 97 50.5
arahy.Tifrunner.gnm1.ann1.3R4EAX Arachis hypogaea HOM05D003335 ORTHO05D003853 1.1e-19 100.1 97 50.5
CiPaw.02G107400 Carya illinoinensis HOM05D003335 ORTHO05D003853 1.1e-19 100.1 96 51.0
Migut.G00547 Erythranthe guttata HOM05D003335 ORTHO05D003853 1.1e-19 100.1 67 65.7
Eucgr.H02940 Eucalyptus grandis HOM05D003335 ORTHO05D003853 1.1e-19 100.1 96 52.1
Thhalv10016510m.g Eutrema salsugineum HOM05D003335 ORTHO05D003853 1.1e-19 100.1 104 51.9
PSO764G0342 Papaver somniferum HOM05D003335 ORTHO05D003853 1.1e-19 100.1 96 53.1
Peaxi162Scf00153g01716 Petunia axillaris HOM05D003335 ORTHO05D003853 1.1e-19 100.1 96 51.0
Sed0002911 Sechium edule HOM05D003335 ORTHO05D003853 1.1e-19 100.1 97 49.5
Sc25g0003550 Simmondsia chinensis HOM05D003335 ORTHO05D003853 1.1e-19 100.1 96 50.0
BcaB02g10552 Brassica carinata HOM05D003335 ORTHO05D003853 1.4e-19 99.8 70 67.1
Glyma.10G133700 Glycine max HOM05D003335 ORTHO05D003853 1.4e-19 99.8 97 51.5
VMungo0720G1182 Vigna mungo HOM05D003335 ORTHO05D003853 1.4e-19 99.8 97 51.5
Lj6g0012574 Lotus japonicus HOM05D003335 ORTHO05D003853 1.8e-19 99.4 97 50.5
Oeu011224.1 Olea europaea HOM05D003335 ORTHO05D003853 1.8e-19 99.4 97 51.5
Oeu059397.1 Olea europaea HOM05D003335 ORTHO05D003853 1.8e-19 99.4 97 51.5
TWI09G1478 Tripterygium wilfordii HOM05D003335 ORTHO05D003853 1.8e-19 99.4 96 53.1
AL4G28990 Arabidopsis lyrata HOM05D003335 ORTHO05D003853 2.3e-19 99.0 104 51.9
MBI19_g02322_MAGBIO Magnolia biondii HOM05D003335 ORTHO05D003853 2.3e-19 99.0 96 49.0
QL06p020925 Quercus lobata HOM05D003335 ORTHO05D003853 2.3e-19 99.0 96 51.0
Ah.13g072240 Amaranthus hybridus HOM05D003335 ORTHO05D003853 4.0e-19 98.2 70 64.3
MBI10_g35441_MAGBIO Magnolia biondii HOM05D003335 ORTHO05D003853 5.2e-19 97.8 96 49.0
Phvul.007G270500 Phaseolus vulgaris HOM05D003335 ORTHO05D003853 5.2e-19 97.8 97 50.5
Actinidia20838 Actinidia chinensis HOM05D003335 ORTHO05D003853 6.8e-19 97.4 96 51.0
AT2G33340 Arabidopsis thaliana HOM05D003335 ORTHO05D003853 6.8e-19 97.4 104 51.0
Medtr1g044720 Medicago truncatula HOM05D003335 ORTHO05D003853 6.8e-19 97.4 94 52.1
TWI53G0185 Tripterygium wilfordii HOM05D003335 ORTHO05D003853 8.9e-19 97.1 96 51.0
MSTRG.9861 Avicennia marina HOM05D003335 ORTHO05D003853 1.2e-18 96.7 105 48.6
SGA_v2.0_scaffold67G22696 Striga asiatica HOM05D003335 ORTHO05D003853 1.2e-18 96.7 97 49.5
TPR.G24009 Trifolium pratense HOM05D003335 ORTHO05D003853 1.2e-18 96.7 94 51.1
vmacro15476 Vaccinium macrocarpon HOM05D003335 ORTHO05D003853 1.2e-18 96.7 96 49.0
Mapoly0157s0022 Marchantia polymorpha HOM05D003335 ORTHO05D003853 1.5e-18 96.3 96 50.0
Psat6g109160 Pisum sativum HOM05D003335 ORTHO05D003853 2.0e-18 95.9 94 50.0
SalBow3G1035 Salvia bowleyana HOM05D003335 ORTHO05D003853 2.0e-18 95.9 97 50.5
Actinidia39928 Actinidia chinensis HOM05D003335 ORTHO05D003853 4.4e-18 94.7 81 56.8
Pp3c6_19920 Physcomitrium patens HOM05D003335 ORTHO05D003853 5.8e-18 94.4 96 51.0
Ca_11904_v3 Cicer arietinum L. HOM05D003335 ORTHO05D003853 9.8e-18 93.6 97 47.4
Ca_11905_v3 Cicer arietinum L. HOM05D003335 ORTHO05D003853 9.8e-18 93.6 97 47.4
Mapoly0157s0021 Marchantia polymorpha HOM05D003335 ORTHO05D003853 9.8e-18 93.6 64 64.1
Zm00001eb046370 Zea mays HOM05D003335 ORTHO05D003853 9.8e-18 93.6 96 50.0
AUR62016172 Chenopodium quinoa HOM05D003335 ORTHO05D003853 1.3e-17 93.2 117 44.4
Os10g0466300 Oryza sativa ssp. japonica HOM05D003335 ORTHO05D003853 3.7e-17 91.7 96 49.0
SHI00771 Sapria himalayana HOM05D003335 ORTHO05D003853 6.4e-17 90.9 104 46.2
unitig_736.g22486 Utricularia gibba HOM05D003335 ORTHO05D003853 6.4e-17 90.9 105 46.7
CBR_g32473 Chara braunii HOM05D003335 ORTHO05D003853 1.1e-16 90.1 96 46.9
AagrBONN_evm.TU.Sc2ySwM_344.1571 Anthoceros agrestis HOM05D003335 ORTHO05D003853 2.4e-16 89.0 94 48.9
Zm00001eb222190 Zea mays HOM05D003335 ORTHO05D003853 2.4e-16 89.0 96 47.9
Lj3A648G42 Lonicera japonica HOM05D003335 ORTHO05D003853 9.2e-16 87.0 121 41.3
Psat0s3964g0080 Pisum sativum HOM05D003335 ORTHO05D003853 1.2e-15 86.7 61 60.7
CDE08G0175 Ceratophyllum demersum HOM05D003335 ORTHO05D003853 1.6e-15 86.3 67 52.2
SMO367G1087 Selaginella moellendorffii HOM05D003335 ORTHO05D003853 1.0e-14 83.6 104 41.3
CDE02G2483 Ceratophyllum demersum HOM05D003335 ORTHO05D003853 1.3e-14 83.2 67 50.7
Actinidia11371 Actinidia chinensis HOM05D003335 ORTHO05D003853 3.0e-14 82.0 81 53.1
DCAR_027345 Daucus carota HOM05D003335 ORTHO05D003853 4.4e-10 68.2 71 50.7
Cre02.g073650 Chlamydomonas reinhardtii HOM05D003335 ORTHO05D003853 4.9e-09 64.7 99 37.4
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 8.4e-09 63.9 66 48.5
Psat0s3125g0040 Pisum sativum HOM05D003335 ORTHO05D003853 5.4e-08 61.2 66 47.0
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 7.8e-07 57.4 66 47.0
DCAR_031698 Daucus carota HOM05D003335 ORTHO05D003853 3.9e-06 55.1 62 41.9


User provided reference genes

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