Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p04110 Brassica napus HOM05D000327 ORTHO05D032645 6.3e-57 223.8 105 100.0
C04p31190 Brassica napus HOM05D000327 ORTHO05D032645 1.4e-56 222.6 105 99.0
BcaC04g19893 Brassica carinata HOM05D000327 ORTHO05D032645 8.4e-54 213.4 108 93.5
BcaC02g10239 Brassica carinata HOM05D023822 ORTHO05D000218 1.8e-35 152.5 73 97.3
BcaC06g30628 Brassica carinata HOM05D000327 ORTHO05D000218 2.8e-17 92.0 88 56.8
BraA03t14283Z Brassica rapa HOM05D000327 ORTHO05D000218 4.1e-16 88.2 94 52.1
Thhalv10024888m.g Eutrema salsugineum HOM05D000327 ORTHO05D000218 3.5e-15 85.1 81 55.6
BcaC09g51386 Brassica carinata HOM05D000327 ORTHO05D000218 7.7e-15 84.0 81 54.3
C01p13680 Brassica napus HOM05D000327 ORTHO05D000218 7.7e-15 84.0 81 54.3
BolC7t45553H Brassica oleracea HOM05D000327 ORTHO05D020020 1.3e-14 83.2 78 56.4
A01p11590 Brassica napus HOM05D000327 ORTHO05D000218 1.7e-14 82.8 81 53.1
AL7G34370 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 2.9e-14 82.0 81 54.3
AT4G19670 Arabidopsis thaliana HOM05D000327 ORTHO05D000218 2.9e-14 82.0 81 54.3
BolC1t01342H Brassica oleracea HOM05D000327 ORTHO05D000218 2.9e-14 82.0 81 53.1
Sp7g18240 Schrenkiella parvula HOM05D000327 ORTHO05D000218 2.9e-14 82.0 81 53.1
BcaNung01758 Brassica carinata HOM05D000327 ORTHO05D000218 5.0e-14 81.3 81 53.1
FvH4_3g12010 Fragaria vesca HOM05D000327 ORTHO05D000218 5.0e-14 81.3 82 52.4
BraA01t01107Z Brassica rapa HOM05D000327 ORTHO05D000218 8.5e-14 80.5 81 51.9
Carub.0007s2148 Capsella rubella HOM05D000327 ORTHO05D000218 1.1e-13 80.1 81 53.1
CARHR226490 Cardamine hirsuta HOM05D000327 ORTHO05D000218 1.1e-13 80.1 81 53.1
FAN16G2897 Fragaria x ananassa HOM05D000327 ORTHO05D000218 1.1e-13 80.1 82 51.2
FAN21G1375 Fragaria x ananassa HOM05D000327 ORTHO05D000218 1.1e-13 80.1 82 51.2
FAN25G1512 Fragaria x ananassa HOM05D000327 ORTHO05D000218 1.1e-13 80.1 82 51.2
Cfa000730 Carpinus fangiana HOM05D000327 ORTHO05D000218 1.9e-13 79.3 95 46.3
Haze_06012 Corylus avellana HOM05D000327 ORTHO05D000218 1.9e-13 79.3 95 46.3
RcHm_v2.0_Chr5g0019691 Rosa chinensis HOM05D000327 ORTHO05D000218 1.9e-13 79.3 82 50.0
Thecc.06G138800 Theobroma cacao HOM05D000327 ORTHO05D000218 1.9e-13 79.3 96 45.8
Eucgr.D01052 Eucalyptus grandis HOM05D000327 ORTHO05D000218 2.5e-13 79.0 82 50.0
CiPaw.10G065900 Carya illinoinensis HOM05D000327 ORTHO05D000218 4.2e-13 78.2 81 49.4
Ciclev10014925m.g Citrus clementina HOM05D000327 ORTHO05D000218 4.2e-13 78.2 81 49.4
COL.COLO4_30955 Corchorus olitorius HOM05D000327 ORTHO05D000218 5.5e-13 77.8 82 48.8
Duzib192G0490 Durio zibethinus HOM05D000327 ORTHO05D000218 5.5e-13 77.8 82 48.8
Nn7g38067 Nelumbo nucifera HOM05D000327 ORTHO05D000218 5.5e-13 77.8 82 48.8
Atru.chr10.604 Acer truncatum HOM05D000327 ORTHO05D000218 7.2e-13 77.4 82 48.8
ClCG01G009130 Citrullus lanatus HOM05D000327 ORTHO05D000218 9.5e-13 77.0 96 43.8
MELO3C021806.2 Cucumis melo HOM05D000327 ORTHO05D000218 9.5e-13 77.0 96 43.8
Manes.16G047576 Manihot esculenta HOM05D000327 ORTHO05D000218 9.5e-13 77.0 82 48.8
Potri.015G117600 Populus trichocarpa HOM05D000327 ORTHO05D000218 1.6e-12 76.3 82 48.8
Prupe.4G108300 Prunus persica HOM05D000327 ORTHO05D000218 1.6e-12 76.3 84 47.6
Sabra12G0089700 Salix brachista HOM05D000327 ORTHO05D000218 1.6e-12 76.3 96 45.8
CsaV3_1G046510 Cucumis sativus L. HOM05D000327 ORTHO05D000218 2.1e-12 75.9 82 47.6
Gohir.D05G146800 Gossypium hirsutum HOM05D000327 ORTHO05D000218 2.7e-12 75.5 96 43.8
Aa31LG6G2220 Aethionema arabicum HOM05D000327 ORTHO05D000218 3.6e-12 75.1 85 49.4
Lalb_Chr09g0328781 Lupinus albus HOM05D000327 ORTHO05D000218 3.6e-12 75.1 82 48.8
MD10G1236000 Malus domestica HOM05D000327 ORTHO05D000218 3.6e-12 75.1 83 47.0
CANSAT35G0541 Cannabis sativa HOM05D000327 ORTHO05D000218 4.7e-12 74.7 82 48.8
Gohir.A05G144400 Gossypium hirsutum HOM05D000327 ORTHO05D000218 4.7e-12 74.7 82 47.6
Gorai.009G150700 Gossypium raimondii HOM05D000327 ORTHO05D000218 4.7e-12 74.7 82 47.6
Sabra15G0135800 Salix brachista HOM05D000327 ORTHO05D000218 4.7e-12 74.7 86 47.7
Sed0016472 Sechium edule HOM05D000327 ORTHO05D000218 4.7e-12 74.7 96 43.8
MSTRG.16335 Avicennia marina HOM05D000327 ORTHO05D000218 6.1e-12 74.3 82 47.6
CiPaw.09G079300 Carya illinoinensis HOM05D000327 ORTHO05D000218 6.1e-12 74.3 81 46.9
VMungo0540G1796 Vigna mungo HOM05D000327 ORTHO05D000218 6.1e-12 74.3 82 47.6
Peaxi162Scf00623g00313 Petunia axillaris HOM05D000327 ORTHO05D000218 1.0e-11 73.6 96 42.7
PGR083G0861 Punica granatum HOM05D000327 ORTHO05D000218 1.0e-11 73.6 85 47.1
PGSC0003DMG400021214 Solanum tuberosum HOM05D000327 ORTHO05D000218 1.0e-11 73.6 96 41.7
MD10G1236100 Malus domestica HOM05D000327 ORTHO05D000218 1.4e-11 73.2 78 48.7
Phvul.006G131900 Phaseolus vulgaris HOM05D000327 ORTHO05D000218 1.4e-11 73.2 82 46.3
Potri.012G119000 Populus trichocarpa HOM05D000327 ORTHO05D000218 1.4e-11 73.2 82 47.6
Sc21g0004370 Simmondsia chinensis HOM05D000327 ORTHO05D000218 1.4e-11 73.2 82 46.3
THA.LOC104811473 Tarenaya hassleriana HOM05D000327 ORTHO05D000218 1.4e-11 73.2 92 45.7
TWI38G1261 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 1.4e-11 73.2 82 45.1
Glyma.09G020000 Glycine max HOM05D000327 ORTHO05D000218 1.8e-11 72.8 82 46.3
MD05G1255900 Malus domestica HOM05D000327 ORTHO05D000218 2.3e-11 72.4 85 44.7
Nitab4.5_0001876g0070 Nicotiana tabacum HOM05D000327 ORTHO05D000218 2.3e-11 72.4 96 41.7
Nitab4.5_0003027g0050 Nicotiana tabacum HOM05D000327 ORTHO05D000218 2.3e-11 72.4 96 41.7
Solyc02g069230.3 Solanum lycopersicum HOM05D000327 ORTHO05D000218 2.3e-11 72.4 82 45.1
Sopen02g018390 Solanum pennellii HOM05D000327 ORTHO05D000218 2.3e-11 72.4 82 45.1
CSS0005495 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 3.0e-11 72.0 82 45.1
Duzib235G0173 Durio zibethinus HOM05D000327 ORTHO05D000218 3.0e-11 72.0 82 46.3
Glyma.15G126500 Glycine max HOM05D000327 ORTHO05D000218 3.0e-11 72.0 82 46.3
Ca_18777_v3 Cicer arietinum L. HOM05D000327 ORTHO05D000218 4.0e-11 71.6 78 47.4
Duzib160G0717 Durio zibethinus HOM05D000327 ORTHO05D000218 4.0e-11 71.6 78 47.4
Sed0026999 Sechium edule HOM05D000327 ORTHO05D000218 4.0e-11 71.6 82 45.1
GSVIVG01026257001 Vitis vinifera HOM05D000327 ORTHO05D000218 4.0e-11 71.6 84 47.6
MBI18_g04365_MAGBIO Magnolia biondii HOM05D000327 ORTHO05D000218 5.2e-11 71.2 82 45.1
AUR62043132 Chenopodium quinoa HOM05D000327 ORTHO05D000218 8.8e-11 70.5 82 43.9
Lalb_Chr16g0385331 Lupinus albus HOM05D000327 ORTHO05D000218 8.8e-11 70.5 82 45.1
CAN.G1202.9 Capsicum annuum HOM05D000327 ORTHO05D000218 1.2e-10 70.1 82 43.9
vmacro03500 Vaccinium macrocarpon HOM05D000327 ORTHO05D000218 1.2e-10 70.1 87 44.8
AUR62036831 Chenopodium quinoa HOM05D000327 ORTHO05D000218 1.5e-10 69.7 82 42.7
Hma1.2p1_0092F.1_g046800 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 1.5e-10 69.7 82 45.1
Lj6g0022216 Lotus japonicus HOM05D000327 ORTHO05D000218 2.0e-10 69.3 79 44.3
Actinidia22379 Actinidia chinensis HOM05D000327 ORTHO05D000218 2.6e-10 68.9 82 43.9
Aqoxy1G01492 Aquilegia oxysepala HOM05D000327 ORTHO05D000218 2.6e-10 68.9 77 45.5
CSS0048794 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 2.6e-10 68.9 78 44.9
EL10Ac7g17231 Beta vulgaris HOM05D000327 ORTHO05D000218 4.4e-10 68.2 82 41.5
Lj1A1142T64 Lonicera japonica HOM05D000327 ORTHO05D000218 4.4e-10 68.2 86 43.0
CSS0027721 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 9.8e-10 67.0 78 43.6
Ca_11353_v3 Cicer arietinum L. HOM05D000327 ORTHO05D000218 1.3e-09 66.6 74 48.6
Migut.M01965 Erythranthe guttata HOM05D000327 ORTHO05D000218 1.3e-09 66.6 88 45.5
Medtr2g028870 Medicago truncatula HOM05D000327 ORTHO05D000218 1.3e-09 66.6 74 50.0
Psat1g169960 Pisum sativum HOM05D000327 ORTHO05D000218 2.2e-09 65.9 74 50.0
TAR627G1088 Trochodendron aralioides HOM05D000327 ORTHO05D000218 2.2e-09 65.9 77 45.5
Ah.08g212100 Amaranthus hybridus HOM05D000327 ORTHO05D000218 2.8e-09 65.5 82 39.0
BolC4t24668H Brassica oleracea HOM05D023822 ORTHO05D027178 2.8e-09 65.5 26 100.0
Cc09_g06790 Coffea canephora HOM05D000327 ORTHO05D000218 2.8e-09 65.5 82 42.7
TAR626G1690 Trochodendron aralioides HOM05D000327 ORTHO05D000218 2.8e-09 65.5 82 41.5
CSS0019482 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 3.7e-09 65.1 82 41.5
CSS0046162 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 3.7e-09 65.1 82 41.5
DCAR_004315 Daucus carota HOM05D000327 ORTHO05D000218 3.7e-09 65.1 79 44.3
DCAR_007792 Daucus carota HOM05D000327 ORTHO05D000218 3.7e-09 65.1 82 43.9
TPR.G17509 Trifolium pratense HOM05D000327 ORTHO05D000218 3.7e-09 65.1 74 47.3
Rhsim13G0129700 Rhododendron simsii HOM05D000327 ORTHO05D000218 4.9e-09 64.7 87 42.5
HanXRQChr04g0115191 Helianthus annuus HOM05D000327 ORTHO05D000218 1.4e-08 63.2 97 39.2
Os12g0631200 Oryza sativa ssp. japonica HOM05D000327 ORTHO05D000218 1.4e-08 63.2 83 42.2
Zm00001eb032750 Zea mays HOM05D000327 ORTHO05D000218 1.4e-08 63.2 84 40.5
PSO675G0479 Papaver somniferum HOM05D000327 ORTHO05D000218 1.8e-08 62.8 115 36.5
SGA_v2.0_scaffold535G52769 Striga asiatica HOM05D000327 ORTHO05D000218 2.4e-08 62.4 77 45.5
ECA238G3547 Erigeron canadensis HOM05D000327 ORTHO05D000218 4.1e-08 61.6 95 37.9
unitig_37.g12057 Utricularia gibba HOM05D000327 ORTHO05D000218 4.1e-08 61.6 74 45.9
CDE02G2449 Ceratophyllum demersum HOM05D000327 ORTHO05D000218 5.4e-08 61.2 83 38.6
PSO541G6330 Papaver somniferum HOM05D000327 ORTHO05D000218 5.4e-08 61.2 115 35.7
BolC5t32156H Brassica oleracea HOM05D000327 ORTHO05D031721 9.2e-08 60.5 46 56.5
CDE06G0707 Ceratophyllum demersum HOM05D000327 ORTHO05D000218 9.2e-08 60.5 83 38.6
C05p34240 Brassica napus HOM05D030087 ORTHO05D031721 1.2e-07 60.1 35 68.6
HanXRQChr14g0447551 Helianthus annuus HOM05D000327 ORTHO05D000218 1.2e-07 60.1 95 37.9
QL11p018227 Quercus lobata HOM05D000327 ORTHO05D000218 2.9e-06 55.5 34 73.5
HPP92_028555 Vanilla planifolia HOM05D000327 ORTHO05D000218 3.8e-06 55.1 77 37.7


User provided reference genes

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