Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C08p00570 Brassica napus HOM05D004465 ORTHO05D005450 7.5e-52 206.8 100 100.0
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 3.9e-16 88.2 45 100.0
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 7.6e-12 73.9 45 82.2
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 1.0e-11 73.6 45 82.2
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 1.3e-11 73.2 45 82.2
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 1.3e-11 73.2 45 82.2
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 1.3e-11 73.2 45 82.2
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 1.3e-11 73.2 45 82.2
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 1.3e-11 73.2 45 82.2
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 3.8e-11 71.6 45 80.0
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.8e-11 71.6 45 80.0
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 6.5e-11 70.9 45 77.8
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 2.5e-10 68.9 45 73.3
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 2.5e-10 68.9 45 77.8
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 4.2e-10 68.2 45 77.8
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 7.1e-10 67.4 45 75.6
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 9.3e-10 67.0 45 71.1
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 2.7e-09 65.5 45 71.1
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 2.7e-09 65.5 45 71.1
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 2.7e-09 65.5 45 71.1
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.7e-09 65.5 43 74.4
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 1.3e-08 63.2 45 68.9
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.3e-08 62.4 45 66.7
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 3.9e-08 61.6 42 69.0
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 3.9e-08 61.6 50 60.0
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 6.7e-08 60.8 45 64.4
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 8.7e-08 60.5 43 69.8
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 8.7e-08 60.5 42 66.7
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 1.5e-07 59.7 42 69.0
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 1.5e-07 59.7 45 62.2
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.9e-07 59.3 42 64.3
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.9e-07 59.3 45 66.7
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.9e-07 59.3 45 66.7
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 1.9e-07 59.3 42 64.3
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 2.5e-07 58.9 48 62.5
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 3.3e-07 58.5 50 58.0
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 5.7e-07 57.8 48 60.4
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 5.7e-07 57.8 48 60.4
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 9.6e-07 57.0 48 60.4
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 9.6e-07 57.0 42 61.9
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 9.6e-07 57.0 48 54.2
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.3e-06 56.6 40 65.0
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.3e-06 56.6 50 48.0
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 2.1e-06 55.8 48 58.3
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 2.1e-06 55.8 40 70.0
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 2.8e-06 55.5 50 52.0
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 2.8e-06 55.5 42 61.9
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.8e-06 55.5 45 64.4
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 2.8e-06 55.5 48 54.2
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 2.8e-06 55.5 48 56.2
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 2.8e-06 55.5 40 62.5
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 2.8e-06 55.5 61 52.5
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 3.7e-06 55.1 45 60.0
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 3.7e-06 55.1 48 56.2
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 3.7e-06 55.1 50 54.0
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 3.7e-06 55.1 45 62.2
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 3.7e-06 55.1 48 56.2
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 4.8e-06 54.7 45 60.0
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 4.8e-06 54.7 40 62.5
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 4.8e-06 54.7 40 62.5
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 4.8e-06 54.7 45 62.2
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 4.8e-06 54.7 48 58.3
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 4.8e-06 54.7 50 50.0
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 6.2e-06 54.3 50 52.0
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 6.2e-06 54.3 50 52.0
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 8.2e-06 53.9 48 56.2
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 8.2e-06 53.9 48 54.2


User provided reference genes

Program Settings