Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p51290 Brassica napus HOM05D002794 ORTHO05D013792 5.2e-29 130.6 76 100.0
A03p52850 Brassica napus HOM05D002794 ORTHO05D013792 3.9e-24 114.4 76 78.9
BcaNung00846 Brassica carinata HOM05D002794 ORTHO05D013792 5.0e-24 114.0 86 84.9
BcaNung02772 Brassica carinata HOM05D002794 ORTHO05D003763 1.5e-12 75.9 69 78.3
A01p12950 Brassica napus HOM05D002794 ORTHO05D003763 1.5e-12 75.9 68 79.4
BraA01t01239Z Brassica rapa HOM05D002794 ORTHO05D003763 1.5e-12 75.9 68 79.4
Sp7g19760 Schrenkiella parvula HOM05D002794 ORTHO05D003763 4.4e-12 74.3 68 77.9
Carub.0007s2870 Capsella rubella HOM05D002794 ORTHO05D003763 1.3e-11 72.8 62 67.7
AL7G32340 Arabidopsis lyrata HOM05D002794 ORTHO05D003763 2.2e-11 72.0 68 73.5
AT4G21660 Arabidopsis thaliana HOM05D002794 ORTHO05D003763 2.2e-11 72.0 68 76.5
Carub.0007s1975 Capsella rubella HOM05D002794 ORTHO05D003763 2.2e-11 72.0 68 76.5
Thhalv10024772m.g Eutrema salsugineum HOM05D002794 ORTHO05D003763 3.8e-11 71.2 68 75.0
BNapus_Darmor_BZH_scaffold_273p00070 Brassica napus HOM05D002794 ORTHO05D013792 4.9e-11 70.9 62 75.8
Aa31LG9G9480 Aethionema arabicum HOM05D002794 ORTHO05D003763 8.4e-11 70.1 69 72.5
C03p44500 Brassica napus HOM05D002794 ORTHO05D013792 8.4e-11 70.1 62 75.8
Duzib160G0262 Durio zibethinus HOM05D002794 ORTHO05D003763 8.4e-11 70.1 67 65.7
Solyc03g006520.3 Solanum lycopersicum HOM05D002794 ORTHO05D003763 8.4e-11 70.1 65 72.3
Zm00001eb271720 Zea mays HOM05D002794 ORTHO05D003763 8.4e-11 70.1 66 62.1
Ciclev10014734m.g Citrus clementina HOM05D002794 ORTHO05D003763 1.4e-10 69.3 66 72.7
THA.LOC104812811 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 1.4e-10 69.3 69 71.0
Zm00001eb229010 Zea mays HOM05D002794 ORTHO05D003763 1.4e-10 69.3 67 61.2
C01p15590 Brassica napus HOM05D002794 ORTHO05D003763 1.9e-10 68.9 68 75.0
BolC1t01511H Brassica oleracea HOM05D002794 ORTHO05D003763 1.9e-10 68.9 68 75.0
Nitab4.5_0001833g0140 Nicotiana tabacum HOM05D002794 ORTHO05D003763 1.9e-10 68.9 65 72.3
Nitab4.5_0003063g0060 Nicotiana tabacum HOM05D002794 ORTHO05D003763 1.9e-10 68.9 65 72.3
Nitab4.5_0003668g0030 Nicotiana tabacum HOM05D002794 ORTHO05D003763 1.9e-10 68.9 65 72.3
Aa31LG6G3640 Aethionema arabicum HOM05D002794 ORTHO05D003763 2.4e-10 68.6 69 71.0
SGA_v2.0_scaffold22G09776 Striga asiatica HOM05D002794 ORTHO05D003763 2.4e-10 68.6 68 63.2
Psat1g205880 Pisum sativum HOM05D002794 ORTHO05D003763 3.2e-10 68.2 69 68.1
Lj6g0005762 Lotus japonicus HOM05D002794 ORTHO05D003763 4.1e-10 67.8 67 68.7
PGSC0003DMG400026857 Solanum tuberosum HOM05D002794 ORTHO05D003763 4.1e-10 67.8 65 70.8
THA.LOC104812959 Tarenaya hassleriana HOM05D002794 ORTHO05D003763 4.1e-10 67.8 69 69.6
Nitab4.5_0000960g0150 Nicotiana tabacum HOM05D002794 ORTHO05D003763 5.4e-10 67.4 62 64.5
Nitab4.5_0007957g0040 Nicotiana tabacum HOM05D002794 ORTHO05D003763 5.4e-10 67.4 62 56.5
Os02g0827300 Oryza sativa ssp. japonica HOM05D002794 ORTHO05D003763 5.4e-10 67.4 69 58.0
Rhsim02G0123600 Rhododendron simsii HOM05D002794 ORTHO05D003763 5.4e-10 67.4 65 67.7
vmacro15890 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 5.4e-10 67.4 65 67.7
Atru.chr10.1951 Acer truncatum HOM05D002794 ORTHO05D003763 7.1e-10 67.0 66 68.2
RhsimUnG0043800 Rhododendron simsii HOM05D002794 ORTHO05D003763 7.1e-10 67.0 68 61.8
Solyc02g078610.4 Solanum lycopersicum HOM05D002794 ORTHO05D003763 7.1e-10 67.0 65 70.8
Sopen02g023470 Solanum pennellii HOM05D002794 ORTHO05D003763 7.1e-10 67.0 65 70.8
PGSC0003DMG400022432 Solanum tuberosum HOM05D002794 ORTHO05D003763 7.1e-10 67.0 65 70.8
Thecc.06G191900 Theobroma cacao HOM05D002794 ORTHO05D003763 7.1e-10 67.0 65 70.8
Duzib192G0647 Durio zibethinus HOM05D002794 ORTHO05D003763 9.2e-10 66.6 66 69.7
Oeu050833.1 Olea europaea HOM05D002794 ORTHO05D003763 9.2e-10 66.6 67 68.7
Peaxi162Scf01021g00126 Petunia axillaris HOM05D002794 ORTHO05D003763 9.2e-10 66.6 66 69.7
Carub.0006s3292 Capsella rubella HOM05D002794 ORTHO05D003763 1.2e-09 66.2 64 54.7
Ca_00324_v3 Cicer arietinum L. HOM05D002794 ORTHO05D003763 1.2e-09 66.2 68 67.6
Psat6g214160 Pisum sativum HOM05D002794 ORTHO05D003763 1.2e-09 66.2 69 68.1
Manes.16G024600 Manihot esculenta HOM05D002794 ORTHO05D003763 1.6e-09 65.9 65 69.2
Peaxi162Scf00535g00054 Petunia axillaris HOM05D002794 ORTHO05D003763 1.6e-09 65.9 56 60.7
Peaxi162Scf00535g00058 Petunia axillaris HOM05D002794 ORTHO05D003763 1.6e-09 65.9 56 60.7
Peaxi162Scf22083g00001 Petunia axillaris HOM05D002794 ORTHO05D003763 1.6e-09 65.9 56 60.7
Prupe.4G042600 Prunus persica HOM05D002794 ORTHO05D003763 1.6e-09 65.9 66 68.2
Duzib235G0583 Durio zibethinus HOM05D002794 ORTHO05D003763 2.1e-09 65.5 67 68.7
Eucgr.D00651 Eucalyptus grandis HOM05D002794 ORTHO05D003763 2.1e-09 65.5 66 69.7
HanXRQChr04g0097251 Helianthus annuus HOM05D002794 ORTHO05D003763 2.1e-09 65.5 69 66.7
Potri.011G047600 Populus trichocarpa HOM05D002794 ORTHO05D003763 2.1e-09 65.5 69 60.9
TWI38G2081 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 2.1e-09 65.5 66 68.2
TWI63G1386 Tripterygium wilfordii HOM05D002794 ORTHO05D003763 2.1e-09 65.5 66 68.2
CAN.G1627.21 Capsicum annuum HOM05D002794 ORTHO05D003763 2.7e-09 65.1 65 70.8
Migut.H01505 Erythranthe guttata HOM05D002794 ORTHO05D003763 2.7e-09 65.1 70 65.7
Peaxi162Scf01163g00119 Petunia axillaris HOM05D002794 ORTHO05D003763 3.5e-09 64.7 67 67.2
Potri.004G039000 Populus trichocarpa HOM05D002794 ORTHO05D003763 3.5e-09 64.7 70 60.0
Sopen03g002520 Solanum pennellii HOM05D002794 ORTHO05D003763 3.5e-09 64.7 65 69.2
Ah.14g089250 Amaranthus hybridus HOM05D002794 ORTHO05D003763 4.6e-09 64.3 69 63.8
EL10Ac8g20333 Beta vulgaris HOM05D002794 ORTHO05D003763 4.6e-09 64.3 68 66.2
Lalb_Chr09g0327551 Lupinus albus HOM05D002794 ORTHO05D003763 4.6e-09 64.3 65 67.7
vmacro03843 Vaccinium macrocarpon HOM05D002794 ORTHO05D003763 4.6e-09 64.3 66 66.7
Hma1.2p1_1719F.1_g299220 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 6.0e-09 63.9 64 68.8
Medtr4g089085 Medicago truncatula HOM05D002794 ORTHO05D003763 6.0e-09 63.9 70 58.6
Nn1g06626 Nelumbo nucifera HOM05D002794 ORTHO05D003763 6.0e-09 63.9 65 66.2
Oeu016115.2 Olea europaea HOM05D002794 ORTHO05D003763 6.0e-09 63.9 68 66.2
Phvul.006G188200 Phaseolus vulgaris HOM05D002794 ORTHO05D003763 6.0e-09 63.9 67 67.2
SalBow3G1823 Salvia bowleyana HOM05D002794 ORTHO05D003763 6.0e-09 63.9 70 60.0
VMungo0540G1808 Vigna mungo HOM05D002794 ORTHO05D003763 6.0e-09 63.9 67 67.2
arahy.Tifrunner.gnm1.ann1.IR33XW Arachis hypogaea HOM05D002794 ORTHO05D003763 7.8e-09 63.5 67 65.7
arahy.Tifrunner.gnm1.ann1.XZLA7I Arachis hypogaea HOM05D002794 ORTHO05D003763 7.8e-09 63.5 67 65.7
CSS0002732 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 7.8e-09 63.5 69 65.2
Dinv07528 Davidia involucrata HOM05D002794 ORTHO05D003763 7.8e-09 63.5 65 67.7
Gorai.010G152200 Gossypium raimondii HOM05D002794 ORTHO05D003763 7.8e-09 63.5 68 66.2
Lalb_Chr05g0218331 Lupinus albus HOM05D002794 ORTHO05D003763 7.8e-09 63.5 67 65.7
Manes.17G042900 Manihot esculenta HOM05D002794 ORTHO05D003763 7.8e-09 63.5 65 67.7
RcHm_v2.0_Chr5g0007761 Rosa chinensis HOM05D002794 ORTHO05D003763 7.8e-09 63.5 66 57.6
TPR.G12067 Trifolium pratense HOM05D002794 ORTHO05D003763 7.8e-09 63.5 69 56.5
CSS0042545 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 1.0e-08 63.2 70 64.3
Haze_06521 Corylus avellana HOM05D002794 ORTHO05D003763 1.0e-08 63.2 66 66.7
Gohir.D06G130400 Gossypium hirsutum HOM05D002794 ORTHO05D003763 1.0e-08 63.2 69 65.2
Lsat_1_v5_gn_1_127401 Lactuca sativa HOM05D002794 ORTHO05D003763 1.0e-08 63.2 66 66.7
Sabra04G0023900 Salix brachista HOM05D002794 ORTHO05D003763 1.0e-08 63.2 70 57.1
ECA248G2629 Erigeron canadensis HOM05D002794 ORTHO05D003763 1.3e-08 62.8 67 67.2
Gohir.A06G125702 Gossypium hirsutum HOM05D002794 ORTHO05D003763 1.3e-08 62.8 70 64.3
Hma1.2p1_0191F.1_g083110 Hydrangea macrophylla HOM05D002794 ORTHO05D003763 1.7e-08 62.4 65 67.7
HanXRQChr16g0518241 Helianthus annuus HOM05D002794 ORTHO05D003763 2.3e-08 62.0 67 64.2
CSS0000580 Camellia sinensis var. sinensis HOM05D002794 ORTHO05D003763 3.0e-08 61.6 68 63.2
CDE08G0397 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 3.0e-08 61.6 66 65.2
Nn1g04005 Nelumbo nucifera HOM05D002794 ORTHO05D003763 3.0e-08 61.6 65 67.7
PGR042G0244 Punica granatum HOM05D002794 ORTHO05D003763 3.0e-08 61.6 67 65.7
RcHm_v2.0_Chr5g0006931 Rosa chinensis HOM05D002794 ORTHO05D013792 3.0e-08 61.6 62 53.2
HPP92_014808 Vanilla planifolia HOM05D002794 ORTHO05D003763 3.0e-08 61.6 64 67.2
Cfa004795 Carpinus fangiana HOM05D002794 ORTHO05D003763 3.9e-08 61.2 63 54.0
CDE02G3438 Ceratophyllum demersum HOM05D002794 ORTHO05D003763 3.9e-08 61.2 66 65.2
Cc02_g12900 Coffea canephora HOM05D002794 ORTHO05D003763 3.9e-08 61.2 68 63.2
CiPaw.10G045900 Carya illinoinensis HOM05D002794 ORTHO05D003763 5.1e-08 60.8 68 64.7
MELO3C008690.2 Cucumis melo HOM05D002794 ORTHO05D003763 6.6e-08 60.5 66 65.2
CsaV3_2G009900 Cucumis sativus L. HOM05D002794 ORTHO05D003763 6.6e-08 60.5 66 65.2
Glyma.13G182600 Glycine max HOM05D002794 ORTHO05D003763 6.6e-08 60.5 69 63.8
Glyma.13G241800 Glycine max HOM05D002794 ORTHO05D003763 6.6e-08 60.5 69 63.8
Glyma.15G071600 Glycine max HOM05D002794 ORTHO05D003763 6.6e-08 60.5 69 63.8
Hund23693 Selenicereus undatus HOM05D002794 ORTHO05D003763 6.6e-08 60.5 67 56.7
GSVIVG01002655001 Vitis vinifera HOM05D002794 ORTHO05D003763 6.6e-08 60.5 65 66.2
Aqoxy3G03900 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 1.1e-07 59.7 66 66.7
CiPaw.09G055200 Carya illinoinensis HOM05D002794 ORTHO05D003763 1.1e-07 59.7 67 64.2
Lj2C286T5 Lonicera japonica HOM05D002794 ORTHO05D003763 1.1e-07 59.7 66 65.2
Sed0016399 Sechium edule HOM05D002794 ORTHO05D003763 1.1e-07 59.7 66 65.2
TPR.G29054 Trifolium pratense HOM05D002794 ORTHO05D003763 1.1e-07 59.7 69 56.5
ClCG11G010460 Citrullus lanatus HOM05D002794 ORTHO05D003763 1.5e-07 59.3 66 65.2
SEGI_11447 Sequoiadendron giganteum HOM05D002794 ORTHO05D003763 1.5e-07 59.3 65 66.2
MD10G1297600 Malus domestica HOM05D002794 ORTHO05D003763 1.9e-07 58.9 68 66.2
QL05p039258 Quercus lobata HOM05D002794 ORTHO05D003763 1.9e-07 58.9 66 57.6
Sed0014333 Sechium edule HOM05D002794 ORTHO05D003763 1.9e-07 58.9 67 64.2
CANSAT35G1204 Cannabis sativa HOM05D002794 ORTHO05D003763 2.5e-07 58.5 72 51.4
DCAR_004112 Daucus carota HOM05D002794 ORTHO05D003763 2.5e-07 58.5 65 66.2
MD05G1318200 Malus domestica HOM05D002794 ORTHO05D003763 2.5e-07 58.5 68 66.2
Mapoly0051s0020 Marchantia polymorpha HOM05D002794 ORTHO05D003763 2.5e-07 58.5 68 58.8
Medtr2g013350 Medicago truncatula HOM05D002794 ORTHO05D003763 2.5e-07 58.5 71 60.6
TAR626G0204 Trochodendron aralioides HOM05D002794 ORTHO05D003763 2.5e-07 58.5 66 65.2
Hund21250 Selenicereus undatus HOM05D002794 ORTHO05D003763 3.3e-07 58.2 69 62.3
COL.COLO4_31514 Corchorus olitorius HOM05D002794 ORTHO05D003763 4.3e-07 57.8 63 66.7
FvH4_3g04740 Fragaria vesca HOM05D002794 ORTHO05D003763 4.3e-07 57.8 68 63.2
FAN11G0433 Fragaria x ananassa HOM05D002794 ORTHO05D003763 4.3e-07 57.8 68 63.2
FAN16G3580 Fragaria x ananassa HOM05D002794 ORTHO05D003763 4.3e-07 57.8 68 63.2
FAN21G3653 Fragaria x ananassa HOM05D002794 ORTHO05D003763 4.3e-07 57.8 68 63.2
FAN25G2654 Fragaria x ananassa HOM05D002794 ORTHO05D003763 4.3e-07 57.8 68 63.2
TAR624G1447 Trochodendron aralioides HOM05D002794 ORTHO05D003763 4.3e-07 57.8 65 66.2
Aqoxy5G00583 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 5.6e-07 57.4 66 65.2
MBI18_g17022_MAGBIO Magnolia biondii HOM05D002794 ORTHO05D003763 5.6e-07 57.4 64 65.6
RcHm_v2.0_Chr5g0007041 Rosa chinensis HOM05D002794 ORTHO05D003763 1.2e-06 56.2 56 50.0
RcHm_v2.0_Chr5g0007191 Rosa chinensis HOM05D002794 ORTHO05D003763 1.2e-06 56.2 56 50.0
RcHm_v2.0_Chr5g0007351 Rosa chinensis HOM05D002794 ORTHO05D013792 1.6e-06 55.8 57 50.9
Lj4g0023033 Lotus japonicus HOM05D002794 ORTHO05D003763 2.8e-06 55.1 62 64.5
Pp3c17_13490 Physcomitrium patens HOM05D002794 ORTHO05D003763 2.8e-06 55.1 69 47.8
Aqoxy7G01746 Aquilegia oxysepala HOM05D002794 ORTHO05D003763 4.7e-06 54.3 65 61.5


User provided reference genes

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