Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p31560 Brassica napus HOM05D000104 ORTHO05D004024 2.0e-242 842.0 423 100.0
BolC7t43695H Brassica oleracea HOM05D000104 ORTHO05D004024 4.9e-145 518.5 270 97.0
A04p34220 Brassica napus HOM05D000104 ORTHO05D004024 1.6e-90 337.4 269 72.1
C04p72040 Brassica napus HOM05D000104 ORTHO05D004024 1.6e-90 337.4 269 72.1
BolC4t28700H Brassica oleracea HOM05D000104 ORTHO05D004024 1.6e-90 337.4 269 72.1
BraA04t18883Z Brassica rapa HOM05D000104 ORTHO05D004024 1.6e-90 337.4 269 72.1
BcaB01g03241 Brassica carinata HOM05D000104 ORTHO05D004024 7.8e-90 335.1 269 71.4
BcaC01g05099 Brassica carinata HOM05D000104 ORTHO05D004024 5.0e-89 332.4 269 71.0
A03p25440 Brassica napus HOM05D000104 ORTHO05D004024 5.0e-89 332.4 269 71.0
C03p30350 Brassica napus HOM05D000104 ORTHO05D004024 5.0e-89 332.4 269 71.0
BraA03t11763Z Brassica rapa HOM05D000104 ORTHO05D004024 5.0e-89 332.4 269 71.0
Thhalv10001280m.g Eutrema salsugineum HOM05D000104 ORTHO05D004024 5.0e-89 332.4 269 71.0
CARHR141280 Cardamine hirsuta HOM05D000104 ORTHO05D004024 8.6e-89 331.6 269 70.6
Sp4g28080 Schrenkiella parvula HOM05D000104 ORTHO05D004024 1.1e-88 331.3 269 70.6
AL4G45240 Arabidopsis lyrata HOM05D000104 ORTHO05D004024 2.5e-88 330.1 269 70.6
Carub.0004s2871 Capsella rubella HOM05D000104 ORTHO05D004024 2.5e-88 330.1 269 70.6
AT2G46020 Arabidopsis thaliana HOM05D000104 ORTHO05D004024 3.3e-88 329.7 269 70.3
BolC3t15384H Brassica oleracea HOM05D000104 ORTHO05D004024 1.2e-87 327.8 269 70.3
Aa31LG1G27420 Aethionema arabicum HOM05D000104 ORTHO05D004024 4.0e-86 322.8 269 68.8
MD07G1134800 Malus domestica HOM05D000104 ORTHO05D004024 1.1e-80 304.7 269 65.4
CiPaw.02G032300 Carya illinoinensis HOM05D000104 ORTHO05D004024 1.9e-80 303.9 269 64.7
Cc02_g38210 Coffea canephora HOM05D000104 ORTHO05D004024 1.9e-80 303.9 267 65.2
Duzib138G0831 Durio zibethinus HOM05D000104 ORTHO05D004024 2.5e-80 303.5 267 65.9
Gohir.D11G094400 Gossypium hirsutum HOM05D000104 ORTHO05D004024 5.6e-80 302.4 267 65.2
Gorai.007G100800 Gossypium raimondii HOM05D000104 ORTHO05D004024 5.6e-80 302.4 267 65.2
MSTRG.20843 Avicennia marina HOM05D000104 ORTHO05D004024 9.5e-80 301.6 269 65.1
CiPaw.01G063200 Carya illinoinensis HOM05D000104 ORTHO05D004024 1.2e-79 301.2 269 65.1
Gohir.A11G090000 Gossypium hirsutum HOM05D000104 ORTHO05D004024 2.1e-79 300.4 267 65.5
Actinidia20892 Actinidia chinensis HOM05D000104 ORTHO05D004024 2.8e-79 300.1 269 65.4
Cfa003903 Carpinus fangiana HOM05D000104 ORTHO05D004024 2.8e-79 300.1 269 64.3
Thecc.01G357200 Theobroma cacao HOM05D000104 ORTHO05D004024 2.8e-79 300.1 267 65.2
Cpa.g.sc11.24 Carica papaya HOM05D000104 ORTHO05D004024 3.6e-79 299.7 269 64.3
Prupe.2G172900 Prunus persica HOM05D000104 ORTHO05D004024 3.6e-79 299.7 267 64.8
Gohir.D07G147500 Gossypium hirsutum HOM05D000104 ORTHO05D004024 4.7e-79 299.3 267 64.8
Gorai.001G168700 Gossypium raimondii HOM05D000104 ORTHO05D004024 4.7e-79 299.3 267 64.8
Solyc01g094800.4 Solanum lycopersicum HOM05D000104 ORTHO05D004024 6.2e-79 298.9 269 64.3
Sopen01g038570 Solanum pennellii HOM05D000104 ORTHO05D004024 6.2e-79 298.9 269 64.3
Potri.014G086500 Populus trichocarpa HOM05D000104 ORTHO05D004024 8.0e-79 298.5 269 65.4
MD01G1065800 Malus domestica HOM05D000104 ORTHO05D004024 1.1e-78 298.1 269 63.6
Duzib268G0692 Durio zibethinus HOM05D000104 ORTHO05D004024 1.8e-78 297.4 267 64.8
FvH4_7g14720 Fragaria vesca HOM05D000104 ORTHO05D004024 1.8e-78 297.4 267 64.8
FAN03G1309 Fragaria x ananassa HOM05D000104 ORTHO05D004024 2.3e-78 297.0 267 64.4
Migut.B01772 Erythranthe guttata HOM05D000104 ORTHO05D004024 4.0e-78 296.2 270 65.6
CsaV3_3G008840 Cucumis sativus L. HOM05D000104 ORTHO05D004024 5.2e-78 295.8 269 63.6
FAN06G0929 Fragaria x ananassa HOM05D000104 ORTHO05D004024 5.2e-78 295.8 267 64.4
FAN06G2979 Fragaria x ananassa HOM05D000104 ORTHO05D004024 5.2e-78 295.8 267 64.4
SalBow3G2941 Salvia bowleyana HOM05D000104 ORTHO05D004024 5.2e-78 295.8 269 63.9
Sed0000619 Sechium edule HOM05D000104 ORTHO05D004024 5.2e-78 295.8 269 63.9
Potri.002G160900 Populus trichocarpa HOM05D000104 ORTHO05D004024 8.9e-78 295.0 269 63.6
QL04p053980 Quercus lobata HOM05D000104 ORTHO05D004024 8.9e-78 295.0 269 64.3
Ciclev10018438m.g Citrus clementina HOM05D000104 ORTHO05D004024 1.5e-77 294.3 267 64.0
Gohir.A07G141800 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.5e-77 294.3 267 64.0
Manes.01G255300 Manihot esculenta HOM05D000104 ORTHO05D004024 1.5e-77 294.3 267 64.4
Phvul.008G061000 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 1.5e-77 294.3 267 63.7
TAR374G1169 Trochodendron aralioides HOM05D000104 ORTHO05D004024 1.5e-77 294.3 269 62.8
FAN01G0653 Fragaria x ananassa HOM05D000104 ORTHO05D004024 2.0e-77 293.9 267 64.8
FAN10G0475 Fragaria x ananassa HOM05D000104 ORTHO05D004024 2.0e-77 293.9 267 64.8
FAN10G3702 Fragaria x ananassa HOM05D000104 ORTHO05D004024 2.0e-77 293.9 267 64.8
RcHm_v2.0_Chr1g0356661 Rosa chinensis HOM05D000104 ORTHO05D004024 2.6e-77 293.5 267 64.0
CSS0043783 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004024 3.4e-77 293.1 269 63.6
Gohir.A12G108600 Gossypium hirsutum HOM05D000104 ORTHO05D004024 3.4e-77 293.1 267 63.7
VMungo0331G0955 Vigna mungo HOM05D000104 ORTHO05D004024 3.4e-77 293.1 267 63.3
Gohir.D12G111700 Gossypium hirsutum HOM05D000104 ORTHO05D004024 4.4e-77 292.7 267 63.7
Gorai.008G121100 Gossypium raimondii HOM05D000104 ORTHO05D004024 4.4e-77 292.7 267 63.7
Psat4g212400 Pisum sativum HOM05D000104 ORTHO05D004024 4.4e-77 292.7 267 64.0
Sed0026227 Sechium edule HOM05D000104 ORTHO05D004024 4.4e-77 292.7 269 63.6
Atru.chr5.516 Acer truncatum HOM05D000104 ORTHO05D004024 5.8e-77 292.4 267 64.4
Haze_15527 Corylus avellana HOM05D000104 ORTHO05D004024 5.8e-77 292.4 265 64.5
Lsat_1_v5_gn_4_35861 Lactuca sativa HOM05D000104 ORTHO05D004024 7.5e-77 292.0 269 62.1
Medtr8g030550 Medicago truncatula HOM05D000104 ORTHO05D004024 1.3e-76 291.2 267 63.7
MSTRG.17279 Avicennia marina HOM05D000104 ORTHO05D004024 1.7e-76 290.8 269 63.2
Dinv32495 Davidia involucrata HOM05D000104 ORTHO05D004024 1.7e-76 290.8 269 63.6
CDE02G2573 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 2.2e-76 290.4 267 63.3
Dinv43833 Davidia involucrata HOM05D000104 ORTHO05D004024 2.2e-76 290.4 269 62.8
Eucgr.D02305 Eucalyptus grandis HOM05D000104 ORTHO05D004024 2.2e-76 290.4 269 62.5
Glyma.16G035100 Glycine max HOM05D000104 ORTHO05D004024 2.2e-76 290.4 267 63.3
Glyma.09G257900 Glycine max HOM05D000104 ORTHO05D004024 3.7e-76 289.7 267 62.5
Lj7C510T14 Lonicera japonica HOM05D000104 ORTHO05D004024 3.7e-76 289.7 267 62.9
TPR.G16549 Trifolium pratense HOM05D000104 ORTHO05D004024 3.7e-76 289.7 267 63.3
Ca_23613_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 4.9e-76 289.3 267 62.9
Phvul.010G100100 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 4.9e-76 289.3 267 62.9
MELO3C006101.2 Cucumis melo HOM05D000104 ORTHO05D004024 6.4e-76 288.9 276 62.0
SGA_v2.0_scaffold4G02298 Striga asiatica HOM05D000104 ORTHO05D004024 1.4e-75 287.7 269 62.5
HanXRQChr17g0562421 Helianthus annuus HOM05D000104 ORTHO05D004024 1.9e-75 287.3 269 61.7
Rhsim07G0013500 Rhododendron simsii HOM05D000104 ORTHO05D004024 1.9e-75 287.3 269 63.2
Glyma.18G234700 Glycine max HOM05D000104 ORTHO05D004024 2.4e-75 287.0 267 62.2
PGR031G3697 Punica granatum HOM05D000104 ORTHO05D004024 2.4e-75 287.0 269 62.8
ECA236G4125 Erigeron canadensis HOM05D000104 ORTHO05D004024 4.1e-75 286.2 269 62.1
SHI13459 Sapria himalayana HOM05D000104 ORTHO05D004024 4.1e-75 286.2 269 62.1
arahy.Tifrunner.gnm1.ann1.AXD4AC Arachis hypogaea HOM05D000104 ORTHO05D004024 5.4e-75 285.8 267 61.4
CDE06G1551 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 5.4e-75 285.8 267 62.2
Lsat_1_v5_gn_7_4220 Lactuca sativa HOM05D000104 ORTHO05D004024 5.4e-75 285.8 269 62.5
Lj1g0023113 Lotus japonicus HOM05D000104 ORTHO05D004024 5.4e-75 285.8 267 62.2
Ah.05g180470 Amaranthus hybridus HOM05D000104 ORTHO05D004024 9.2e-75 285.0 269 61.7
DCAR_005356 Daucus carota HOM05D000104 ORTHO05D004024 1.2e-74 284.6 263 63.5
arahy.Tifrunner.gnm1.ann1.8BN0DB Arachis hypogaea HOM05D000104 ORTHO05D004024 1.6e-74 284.3 267 61.0
CAN.G78.94 Capsicum annuum HOM05D000104 ORTHO05D004024 1.6e-74 284.3 269 61.3
HanXRQChr04g0121221 Helianthus annuus HOM05D000104 ORTHO05D004024 2.1e-74 283.9 269 61.7
Peaxi162Scf00020g00814 Petunia axillaris HOM05D000104 ORTHO05D004024 2.7e-74 283.5 267 61.8
Psat3g107600 Pisum sativum HOM05D000104 ORTHO05D004024 2.7e-74 283.5 268 62.3
Hund16655 Selenicereus undatus HOM05D000104 ORTHO05D004024 2.7e-74 283.5 269 61.3
TWI14G1411 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 2.7e-74 283.5 267 60.7
EL10Ac1g00397 Beta vulgaris HOM05D000104 ORTHO05D004024 3.5e-74 283.1 269 61.0
Medtr7g078090 Medicago truncatula HOM05D000104 ORTHO05D004024 3.5e-74 283.1 268 61.9
Glyma.07G069400 Glycine max HOM05D000104 ORTHO05D004024 4.6e-74 282.7 267 61.8
Manes.05G032800 Manihot esculenta HOM05D000104 ORTHO05D004024 4.6e-74 282.7 267 62.9
Zm00001eb229760 Zea mays HOM05D000104 ORTHO05D004024 6.0e-74 282.3 267 61.0
Lj3g0005670 Lotus japonicus HOM05D000104 ORTHO05D004024 7.8e-74 282.0 267 61.8
TPR.G37713 Trifolium pratense HOM05D000104 ORTHO05D004024 1.7e-73 280.8 284 60.6
Sc01g0003500 Simmondsia chinensis HOM05D000104 ORTHO05D004024 2.3e-73 280.4 267 61.4
vmacro13264 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 2.3e-73 280.4 303 57.4
Ca_07936_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 3.9e-73 279.6 267 61.0
arahy.Tifrunner.gnm1.ann1.K947VD Arachis hypogaea HOM05D000104 ORTHO05D004024 1.5e-72 277.7 274 60.2
HPP92_025793 Vanilla planifolia HOM05D000104 ORTHO05D004024 1.5e-72 277.7 267 60.3
TWI23G0799 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 2.5e-72 276.9 267 60.7
unitig_22.g5347 Utricularia gibba HOM05D000104 ORTHO05D004024 4.3e-72 276.2 267 60.3
PSO782G4172 Papaver somniferum HOM05D000104 ORTHO05D004024 9.5e-72 275.0 267 60.3
Lalb_Chr10g0096851 Lupinus albus HOM05D000104 ORTHO05D004024 2.8e-71 273.5 294 56.5
HPP92_022592 Vanilla planifolia HOM05D000104 ORTHO05D004024 2.8e-71 273.5 267 60.3
PSO478G3174 Papaver somniferum HOM05D000104 ORTHO05D004024 3.6e-71 273.1 267 59.9
ECA234G0162 Erigeron canadensis HOM05D000104 ORTHO05D004024 6.2e-71 272.3 269 59.1
Sabra02G0127900 Salix brachista HOM05D000104 ORTHO05D004024 6.2e-71 272.3 269 59.5
AUR62004379 Chenopodium quinoa HOM05D000104 ORTHO05D004024 8.1e-71 271.9 269 59.9
AUR62022585 Chenopodium quinoa HOM05D000104 ORTHO05D004024 8.1e-71 271.9 269 59.9
ATR0680G059 Amborella trichopoda HOM05D000104 ORTHO05D004024 3.1e-70 270.0 267 59.2
Aqoxy7G00269 Aquilegia oxysepala HOM05D000104 ORTHO05D004024 8.9e-70 268.5 267 59.2
HanXRQChr16g0522331 Helianthus annuus HOM05D000104 ORTHO05D004024 8.9e-70 268.5 270 58.1
HanXRQChr16g0522401 Helianthus annuus HOM05D000104 ORTHO05D004024 8.9e-70 268.5 270 58.1
Nn1g01574 Nelumbo nucifera HOM05D000104 ORTHO05D004024 7.5e-69 265.4 267 59.2
ClCG05G001450 Citrullus lanatus HOM05D000104 ORTHO05D004024 9.9e-69 265.0 182 78.0
unitig_8.g3794 Utricularia gibba HOM05D000104 ORTHO05D004024 1.7e-68 264.2 287 55.7
MBI18_g02828_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 2.2e-68 263.8 307 53.1
TAR375G0536 Trochodendron aralioides HOM05D000104 ORTHO05D004024 2.2e-68 263.8 269 59.1
arahy.Tifrunner.gnm1.ann1.03HQ0D Arachis hypogaea HOM05D000104 ORTHO05D004024 1.4e-67 261.2 268 57.5
CANSAT56G1829 Cannabis sativa HOM05D000104 ORTHO05D004024 1.4e-67 261.2 267 59.2
Nn6g33365 Nelumbo nucifera HOM05D000104 ORTHO05D004024 1.9e-67 260.8 269 57.2
MBI17_g33790_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 8.1e-63 245.4 179 73.2
HPP92_025786 Vanilla planifolia HOM05D000104 ORTHO05D004024 8.9e-62 241.9 260 56.5
DCAR_025198 Daucus carota HOM05D000104 ORTHO05D004024 1.1e-59 235.0 255 55.7
THA.LOC104803063 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 1.2e-55 221.5 398 41.5
AagrBONN_evm.TU.Sc2ySwM_228.1015 Anthoceros agrestis HOM05D000104 ORTHO05D004024 8.1e-55 218.8 267 50.6
COL.COLO4_12729 Corchorus olitorius HOM05D000104 ORTHO05D004024 1.8e-54 217.6 140 82.1
Mapoly0001s0041 Marchantia polymorpha HOM05D000104 ORTHO05D004024 4.4e-53 213.0 269 50.9
GSVIVG01026952001 Vitis vinifera HOM05D000104 ORTHO05D004024 1.7e-52 211.1 267 50.9
Rhsim01G0163000 Rhododendron simsii HOM05D000104 ORTHO05D004024 2.9e-52 210.3 266 50.8
Lalb_Chr17g0339491 Lupinus albus HOM05D000104 ORTHO05D004024 3.8e-52 209.9 143 77.6
VMungo1383G0174 Vigna mungo HOM05D000104 ORTHO05D004024 5.4e-51 206.1 140 77.9
Pp3c3_15820 Physcomitrium patens HOM05D000104 ORTHO05D004024 7.1e-51 205.7 269 49.4
Pp3c13_14440 Physcomitrium patens HOM05D000104 ORTHO05D004024 1.6e-50 204.5 275 49.1
vmacro20931 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 3.5e-50 203.4 299 47.2
Os02g0114033 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004024 1.3e-49 201.4 142 74.6
SEGI_24766 Sequoiadendron giganteum HOM05D000104 ORTHO05D004024 8.1e-39 165.6 180 53.9
BcaC06g34218 Brassica carinata HOM05D000104 ORTHO05D004024 4.2e-35 153.3 85 92.9
Oeu060227.1 Olea europaea HOM05D000104 ORTHO05D004024 3.0e-33 147.1 142 60.6
CBR_g12457 Chara braunii HOM05D000104 ORTHO05D004024 2.4e-30 137.5 279 36.9
Nitab4.5_0006018g0100 Nicotiana tabacum HOM05D000104 ORTHO05D004024 3.7e-15 87.0 127 47.2
Cre07.g325700 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D004024 4.8e-15 86.7 250 31.2
Lalb_Chr17g0339481 Lupinus albus HOM05D000104 ORTHO05D004024 2.0e-13 81.3 129 42.6
MCO16G286 Micromonas commoda HOM05D000104 ORTHO05D004024 7.7e-13 79.3 291 30.2
CDE02G0245 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 2.3e-09 67.8 56 60.7
CDE06G2476 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 2.3e-09 67.8 56 60.7
Nitab4.5_0000583g0220 Nicotiana tabacum HOM05D000104 ORTHO05D004024 2.3e-09 67.8 57 63.2
Sabra14G0062700 Salix brachista HOM05D000104 ORTHO05D004024 2.0e-08 64.7 56 58.9
VMungo1383G0951 Vigna mungo HOM05D000104 ORTHO05D004024 2.6e-08 64.3 56 58.9
COL.COLO4_12730 Corchorus olitorius HOM05D000104 ORTHO05D004024 7.4e-08 62.8 56 57.1
Os02g0114000 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004024 7.4e-08 62.8 56 57.1
PRCOL_00004212 Prasinoderma coloniale HOM05D000104 ORTHO05D004024 2.2e-07 61.2 102 40.2
HanXRQChr16g0522411 Helianthus annuus HOM05D000104 ORTHO05D004024 2.8e-07 60.8 54 59.3


User provided reference genes

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