Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p24460 Brassica napus HOM05D003452 ORTHO05D004046 6.8e-60 233.8 118 100.0
BolC7t42966H Brassica oleracea HOM05D003452 ORTHO05D004046 2.9e-58 228.4 121 97.5
BraA07t29397Z Brassica rapa HOM05D003452 ORTHO05D004046 9.2e-33 143.7 112 74.1
Sp2g29430 Schrenkiella parvula HOM05D003452 ORTHO05D004046 1.5e-19 99.8 76 68.4
AT5G67240 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 9.9e-19 97.1 76 67.1
AL8G44100 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 1.3e-18 96.7 76 67.1
Thhalv10003942m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 1.3e-18 96.7 78 66.7
Carub.0008s2727 Capsella rubella HOM05D003452 ORTHO05D004046 2.4e-17 92.4 76 61.8
BcaC06g34807 Brassica carinata HOM05D001905 ORTHO05D001820 3.2e-17 92.0 86 57.0
C07p24440 Brassica napus HOM05D001905 ORTHO05D001820 3.2e-17 92.0 86 57.0
Aa31LG1G15770 Aethionema arabicum HOM05D003452 ORTHO05D004046 4.2e-17 91.7 76 60.5
A07p16710 Brassica napus HOM05D001905 ORTHO05D001820 7.1e-17 90.9 89 56.2
BolC7t42964H Brassica oleracea HOM05D001905 ORTHO05D001820 7.1e-17 90.9 86 57.0
BraA07t29394Z Brassica rapa HOM05D001905 ORTHO05D001820 7.1e-17 90.9 89 56.2
THA.LOC104827394 Tarenaya hassleriana HOM05D003452 ORTHO05D004046 1.2e-16 90.1 77 61.0
BcaB02g09943 Brassica carinata HOM05D003452 ORTHO05D004046 2.1e-16 89.4 70 64.3
CARHR280390 Cardamine hirsuta HOM05D003452 ORTHO05D004046 2.7e-16 89.0 76 61.8
THA.LOC104805170 Tarenaya hassleriana HOM05D003452 ORTHO05D004046 2.3e-15 85.9 77 58.4
Sp7g29190 Schrenkiella parvula HOM05D003452 ORTHO05D004046 1.5e-14 83.2 71 60.6
CARHR239210 Cardamine hirsuta HOM05D003452 ORTHO05D004046 5.6e-14 81.3 77 54.5
Duzib147G1492 Durio zibethinus HOM05D003452 ORTHO05D004046 5.6e-14 81.3 76 55.3
Thecc.01G062600 Theobroma cacao HOM05D003452 ORTHO05D004046 9.6e-14 80.5 76 56.6
Thhalv10024938m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 1.3e-13 80.1 76 57.9
Gohir.A11G230304 Gossypium hirsutum HOM05D003452 ORTHO05D004046 3.7e-13 78.6 76 52.6
Gorai.003G066000 Gossypium raimondii HOM05D003452 ORTHO05D004046 3.7e-13 78.6 76 52.6
Sp7g29060 Schrenkiella parvula HOM05D003452 ORTHO05D004046 8.1e-13 77.4 76 53.9
CARHR207730 Cardamine hirsuta HOM05D003452 ORTHO05D004046 1.4e-12 76.6 77 55.8
BcaB01g00639 Brassica carinata HOM05D003452 ORTHO05D004046 4.0e-12 75.1 71 59.2
Cpa.g.sc55.98 Carica papaya HOM05D003452 ORTHO05D004046 4.0e-12 75.1 76 48.7
Nn5g30393 Nelumbo nucifera HOM05D003452 ORTHO05D004046 4.0e-12 75.1 76 51.3
Glyma.17G167900 Glycine max HOM05D003452 ORTHO05D004046 9.0e-12 73.9 74 51.4
AUR62038246 Chenopodium quinoa HOM05D003452 ORTHO05D004046 1.2e-11 73.6 74 48.6
MELO3C007581.2 Cucumis melo HOM05D003452 ORTHO05D004046 1.5e-11 73.2 87 46.0
DCAR_010856 Daucus carota HOM05D003452 ORTHO05D004046 1.5e-11 73.2 71 53.5
Sp5g12020 Schrenkiella parvula HOM05D003452 ORTHO05D004046 2.0e-11 72.8 71 59.2
BcaB01g00636 Brassica carinata HOM05D003452 ORTHO05D004046 2.6e-11 72.4 74 55.4
AUR62003930 Chenopodium quinoa HOM05D003452 ORTHO05D004046 2.6e-11 72.4 74 48.6
TWI73G0964 Tripterygium wilfordii HOM05D003452 ORTHO05D004046 2.6e-11 72.4 80 47.5
Hund13910 Selenicereus undatus HOM05D003452 ORTHO05D004046 4.5e-11 71.6 77 46.8
BcaC07g39477 Brassica carinata HOM05D003452 ORTHO05D004046 5.8e-11 71.2 71 57.7
A09p43220 Brassica napus HOM05D003452 ORTHO05D004046 5.8e-11 71.2 71 57.7
C08p25210 Brassica napus HOM05D003452 ORTHO05D004046 5.8e-11 71.2 71 57.7
BolC8t50143H Brassica oleracea HOM05D003452 ORTHO05D004046 5.8e-11 71.2 71 57.7
Atru.chr3.258 Acer truncatum HOM05D003452 ORTHO05D004046 9.9e-11 70.5 71 50.7
Eucgr.I00803 Eucalyptus grandis HOM05D003452 ORTHO05D004046 9.9e-11 70.5 76 48.7
GSVIVG01000228001 Vitis vinifera HOM05D003452 ORTHO05D004046 9.9e-11 70.5 76 47.4
CsaV3_6G043510 Cucumis sativus L. HOM05D003452 ORTHO05D004046 1.3e-10 70.1 71 50.7
Sopen10g033610 Solanum pennellii HOM05D003452 ORTHO05D004046 1.3e-10 70.1 74 51.4
AT3G50100 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 1.7e-10 69.7 71 57.7
HanXRQChr11g0348391 Helianthus annuus HOM05D003452 ORTHO05D004046 1.7e-10 69.7 57 57.9
Solyc10g084160.2 Solanum lycopersicum HOM05D003452 ORTHO05D004046 1.7e-10 69.7 74 51.4
Lj1g0003061 Lotus japonicus HOM05D003452 ORTHO05D004046 2.9e-10 68.9 74 45.9
PGSC0003DMG400010461 Solanum tuberosum HOM05D003452 ORTHO05D004046 4.9e-10 68.2 74 50.0
Actinidia36467 Actinidia chinensis HOM05D003452 ORTHO05D004046 6.4e-10 67.8 74 45.9
Ciclev10025436m.g Citrus clementina HOM05D003452 ORTHO05D004046 6.4e-10 67.8 71 49.3
Hma1.2p1_0017F.1_g011830 Hydrangea macrophylla HOM05D003452 ORTHO05D004046 6.4e-10 67.8 74 48.6
Medtr1g023955 Medicago truncatula HOM05D003452 ORTHO05D004046 6.4e-10 67.8 74 47.3
Medtr1g423960 Medicago truncatula HOM05D003452 ORTHO05D004046 6.4e-10 67.8 74 47.3
AL5G30220 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 8.4e-10 67.4 71 56.3
BraA09t39792Z Brassica rapa HOM05D003452 ORTHO05D004046 8.4e-10 67.4 72 56.9
Thhalv10011012m.g Eutrema salsugineum HOM05D003452 ORTHO05D004046 8.4e-10 67.4 57 63.2
Sed0010356 Sechium edule HOM05D003452 ORTHO05D004046 8.4e-10 67.4 71 47.9
Cc07_g06390 Coffea canephora HOM05D003452 ORTHO05D004046 1.1e-09 67.0 76 50.0
CAN.G1778.2 Capsicum annuum HOM05D003452 ORTHO05D004046 1.4e-09 66.6 74 50.0
FvH4_1g16590 Fragaria vesca HOM05D003452 ORTHO05D004046 1.4e-09 66.6 76 44.7
FAN19G1474 Fragaria x ananassa HOM05D003452 ORTHO05D004046 1.4e-09 66.6 76 44.7
FAN23G2911 Fragaria x ananassa HOM05D003452 ORTHO05D004046 1.4e-09 66.6 76 44.7
FAN26G1073 Fragaria x ananassa HOM05D003452 ORTHO05D004046 1.4e-09 66.6 76 44.7
FAN28G2117 Fragaria x ananassa HOM05D003452 ORTHO05D004046 1.4e-09 66.6 76 44.7
Lsat_1_v5_gn_3_90381 Lactuca sativa HOM05D003452 ORTHO05D004046 1.4e-09 66.6 54 53.7
Lj4A155G89 Lonicera japonica HOM05D003452 ORTHO05D004046 1.4e-09 66.6 54 55.6
Lj5g0005600 Lotus japonicus HOM05D003452 ORTHO05D004046 1.4e-09 66.6 74 44.6
MD02G1178000 Malus domestica HOM05D003452 ORTHO05D004046 1.9e-09 66.2 71 46.5
MD15G1287900 Malus domestica HOM05D003452 ORTHO05D004046 1.9e-09 66.2 71 46.5
Prupe.6G230000 Prunus persica HOM05D003452 ORTHO05D004046 1.9e-09 66.2 71 46.5
Sc18g0004770 Simmondsia chinensis HOM05D003452 ORTHO05D004046 1.9e-09 66.2 73 43.8
Ca_13403_v3 Cicer arietinum L. HOM05D003452 ORTHO05D004046 2.4e-09 65.9 74 44.6
Nitab4.5_0001192g0060 Nicotiana tabacum HOM05D003452 ORTHO05D004046 2.4e-09 65.9 52 51.9
AT5G05540 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 3.2e-09 65.5 48 68.8
MSTRG.2860 Avicennia marina HOM05D003452 ORTHO05D004046 3.2e-09 65.5 54 57.4
CAN.G1778.3 Capsicum annuum HOM05D003452 ORTHO05D004046 3.2e-09 65.5 72 45.8
FAN26G2566 Fragaria x ananassa HOM05D003452 ORTHO05D004046 3.2e-09 65.5 76 43.4
Lalb_Chr05g0226301 Lupinus albus HOM05D003452 ORTHO05D004046 3.2e-09 65.5 74 47.3
EL10Ac6g15698 Beta vulgaris HOM05D003452 ORTHO05D004046 4.2e-09 65.1 74 44.6
Cfa004056 Carpinus fangiana HOM05D003452 ORTHO05D004046 4.2e-09 65.1 56 51.8
Nitab4.5_0001297g0030 Nicotiana tabacum HOM05D003452 ORTHO05D004046 4.2e-09 65.1 50 54.0
RcHm_v2.0_Chr2g0106501 Rosa chinensis HOM05D003452 ORTHO05D004046 4.2e-09 65.1 76 43.4
TPR.G34364 Trifolium pratense HOM05D003452 ORTHO05D004046 7.1e-09 64.3 74 44.6
AL6G15430 Arabidopsis lyrata HOM05D003452 ORTHO05D004046 9.3e-09 63.9 53 60.4
Haze_15356 Corylus avellana HOM05D003452 ORTHO05D004046 9.3e-09 63.9 52 53.8
VMungo0251G0295 Vigna mungo HOM05D003452 ORTHO05D004046 9.3e-09 63.9 74 44.6
ClCG01G017040 Citrullus lanatus HOM05D003452 ORTHO05D004046 1.6e-08 63.2 51 52.9
unitig_744.g24371 Utricularia gibba HOM05D003452 ORTHO05D004046 1.6e-08 63.2 54 53.7
Atru.chr3.259 Acer truncatum HOM05D003452 ORTHO05D004046 2.1e-08 62.8 51 56.9
Oeu049888.1 Olea europaea HOM05D003452 ORTHO05D004046 2.1e-08 62.8 51 56.9
SGA_v2.0_scaffold15G07361 Striga asiatica HOM05D003452 ORTHO05D004046 2.1e-08 62.8 54 55.6
Lj7A83T65 Lonicera japonica HOM05D003452 ORTHO05D004046 2.7e-08 62.4 75 44.0
Peaxi162Scf00472g00008 Petunia axillaris HOM05D003452 ORTHO05D004046 2.7e-08 62.4 49 57.1
Carub.0006s0444 Capsella rubella HOM05D003452 ORTHO05D004046 3.5e-08 62.0 64 53.1
Lj7A76T78 Lonicera japonica HOM05D003452 ORTHO05D004046 3.5e-08 62.0 74 44.6
CiPaw.02G006400 Carya illinoinensis HOM05D003452 ORTHO05D004046 4.6e-08 61.6 52 53.8
PSO210G5185 Papaver somniferum HOM05D003452 ORTHO05D004046 4.6e-08 61.6 76 42.1
Aqoxy6G02896 Aquilegia oxysepala HOM05D003452 ORTHO05D004046 6.0e-08 61.2 46 56.5
ECA246G2207 Erigeron canadensis HOM05D003452 ORTHO05D004046 6.0e-08 61.2 54 50.0
Manes.12G151100 Manihot esculenta HOM05D003452 ORTHO05D004046 6.0e-08 61.2 91 40.7
PGR004G0567 Punica granatum HOM05D003452 ORTHO05D004046 6.0e-08 61.2 76 35.5
QL12p009800 Quercus lobata HOM05D003452 ORTHO05D004046 7.9e-08 60.8 76 43.4
Ca_13416_v3 Cicer arietinum L. HOM05D003452 ORTHO05D004046 1.8e-07 59.7 50 52.0
Oeu008437.1 Olea europaea HOM05D003452 ORTHO05D004046 1.8e-07 59.7 74 41.9
PSO447G0386 Papaver somniferum HOM05D003452 ORTHO05D004046 1.8e-07 59.7 71 45.1
Gohir.D11G232800 Gossypium hirsutum HOM05D003452 ORTHO05D004046 2.3e-07 59.3 59 50.8
Psat6g004200 Pisum sativum HOM05D003452 ORTHO05D004046 3.9e-07 58.5 71 42.3
Lsat_1_v5_gn_3_90320 Lactuca sativa HOM05D003452 ORTHO05D004046 5.1e-07 58.2 50 50.0
Phvul.003G240600 Phaseolus vulgaris HOM05D003452 ORTHO05D004046 5.1e-07 58.2 74 39.2
Rhsim10G0113000 Rhododendron simsii HOM05D003452 ORTHO05D004046 5.1e-07 58.2 88 37.5
Aqoxy2G00584 Aquilegia oxysepala HOM05D003452 ORTHO05D004046 6.7e-07 57.8 71 42.3
Lalb_Chr16g0378691 Lupinus albus HOM05D003452 ORTHO05D004046 6.7e-07 57.8 51 51.0
Os04g0650600 Oryza sativa ssp. japonica HOM05D003452 ORTHO05D004046 6.7e-07 57.8 67 47.8
Migut.H00401 Erythranthe guttata HOM05D003452 ORTHO05D004046 8.7e-07 57.4 74 41.9
PSO700G0024 Papaver somniferum HOM05D003452 ORTHO05D004046 1.1e-06 57.0 62 46.8
ATR0006G091 Amborella trichopoda HOM05D003452 ORTHO05D004046 2.5e-06 55.8 51 49.0
PSO210G3568 Papaver somniferum HOM05D003452 ORTHO05D004046 2.5e-06 55.8 54 50.0
PSO210G6200 Papaver somniferum HOM05D003452 ORTHO05D004046 2.5e-06 55.8 76 38.2
CARHR112890 Cardamine hirsuta HOM05D003452 ORTHO05D004046 3.3e-06 55.5 70 51.4
PSO170G4023 Papaver somniferum HOM05D003452 ORTHO05D004046 3.3e-06 55.5 51 52.9
Lalb_Chr09g0323371 Lupinus albus HOM05D003452 ORTHO05D004046 4.3e-06 55.1 51 47.1
SEGI_05143 Sequoiadendron giganteum HOM05D003452 ORTHO05D004046 5.6e-06 54.7 63 44.4
vmacro05258 Vaccinium macrocarpon HOM05D003452 ORTHO05D004046 5.6e-06 54.7 103 35.9
C01p30070 Brassica napus HOM05D003452 ORTHO05D004046 7.4e-06 54.3 71 49.3
BolC1t02949H Brassica oleracea HOM05D003452 ORTHO05D004046 7.4e-06 54.3 71 49.3
Zm00001eb068290 Zea mays HOM05D003452 ORTHO05D004046 9.6e-06 53.9 67 44.8


User provided reference genes

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