Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p22580 Brassica napus HOM05D000924 ORTHO05D001209 1.1e-66 256.5 128 100.0
BcaC06g34852 Brassica carinata HOM05D000924 ORTHO05D001209 5.1e-29 131.3 77 81.8
A07p15350 Brassica napus HOM05D000924 ORTHO05D001209 5.1e-29 131.3 77 81.8
C07p22650 Brassica napus HOM05D000924 ORTHO05D001209 5.1e-29 131.3 77 81.8
BolC7t42794H Brassica oleracea HOM05D000924 ORTHO05D001209 5.1e-29 131.3 77 81.8
BraA07t29275Z Brassica rapa HOM05D000924 ORTHO05D001209 5.1e-29 131.3 77 81.8
BcaB03g14290 Brassica carinata HOM05D000924 ORTHO05D001209 6.7e-29 131.0 77 81.8
A02p10320 Brassica napus HOM05D000924 ORTHO05D001209 1.1e-28 130.2 77 81.8
C02p17050 Brassica napus HOM05D000924 ORTHO05D001209 1.1e-28 130.2 77 81.8
BolC2t07803H Brassica oleracea HOM05D000924 ORTHO05D001209 1.1e-28 130.2 77 81.8
BraA02t06099Z Brassica rapa HOM05D000924 ORTHO05D001209 1.1e-28 130.2 77 81.8
CARHR021420 Cardamine hirsuta HOM05D000924 ORTHO05D001209 3.3e-28 128.6 77 79.2
Sp1g18660 Schrenkiella parvula HOM05D000924 ORTHO05D001209 3.3e-28 128.6 77 79.2
AL1G33990 Arabidopsis lyrata HOM05D000924 ORTHO05D001209 7.4e-28 127.5 77 77.9
AT1G20960 Arabidopsis thaliana HOM05D000924 ORTHO05D001209 7.4e-28 127.5 77 77.9
Carub.0001s2043 Capsella rubella HOM05D000924 ORTHO05D001209 7.4e-28 127.5 77 77.9
Thhalv10006525m.g Eutrema salsugineum HOM05D000924 ORTHO05D001209 1.3e-27 126.7 77 77.9
Aa31LG7G5140 Aethionema arabicum HOM05D000924 ORTHO05D001209 2.8e-27 125.6 77 77.9
THA.LOC104812019 Tarenaya hassleriana HOM05D000924 ORTHO05D001209 6.3e-27 124.4 62 91.9
COL.COLO4_20702 Corchorus olitorius HOM05D000924 ORTHO05D001209 1.1e-26 123.6 62 91.9
Hund05759 Selenicereus undatus HOM05D000924 ORTHO05D001209 3.1e-26 122.1 62 88.7
BcaB03g11743 Brassica carinata HOM05D000924 ORTHO05D001209 5.3e-26 121.3 62 90.3
AUR62024846 Chenopodium quinoa HOM05D000924 ORTHO05D001209 5.3e-26 121.3 62 90.3
CANSAT80G1721 Cannabis sativa HOM05D000924 ORTHO05D001209 9.1e-26 120.6 62 88.7
Duzib128G1905 Durio zibethinus HOM05D000924 ORTHO05D001209 9.1e-26 120.6 62 88.7
Gohir.A10G187300 Gossypium hirsutum HOM05D000924 ORTHO05D001209 9.1e-26 120.6 62 88.7
Gohir.D10G194400 Gossypium hirsutum HOM05D000924 ORTHO05D001209 9.1e-26 120.6 62 88.7
Gorai.011G217300 Gossypium raimondii HOM05D000924 ORTHO05D001209 9.1e-26 120.6 62 88.7
Thecc.10G149400 Theobroma cacao HOM05D000924 ORTHO05D001209 9.1e-26 120.6 62 88.7
CDE06G2318 Ceratophyllum demersum HOM05D000924 ORTHO05D001209 1.2e-25 120.2 77 74.0
CDE07G1660 Ceratophyllum demersum HOM05D000924 ORTHO05D001209 1.2e-25 120.2 77 74.0
PGR083G1659 Punica granatum HOM05D000924 ORTHO05D001209 1.5e-25 119.8 62 88.7
SEGI_03458 Sequoiadendron giganteum HOM05D000924 ORTHO05D001209 2.0e-25 119.4 62 88.7
Sc15g0004020 Simmondsia chinensis HOM05D000924 ORTHO05D001209 2.0e-25 119.4 62 87.1
Cpa.g.sc36.108 Carica papaya HOM05D000924 ORTHO05D001209 2.6e-25 119.0 62 87.1
Glyma.08G173500 Glycine max HOM05D000924 ORTHO05D001209 2.6e-25 119.0 62 87.1
Glyma.15G253800 Glycine max HOM05D000924 ORTHO05D001209 2.6e-25 119.0 62 87.1
MBI15_g36602_MAGBIO Magnolia biondii HOM05D000924 ORTHO05D001209 2.6e-25 119.0 77 72.7
Manes.18G005100 Manihot esculenta HOM05D000924 ORTHO05D001209 2.6e-25 119.0 62 87.1
Mapoly0043s0081 Marchantia polymorpha HOM05D000924 ORTHO05D001209 2.6e-25 119.0 62 88.7
Phvul.005G055300 Phaseolus vulgaris HOM05D000924 ORTHO05D001209 2.6e-25 119.0 62 87.1
SHI31129 Sapria himalayana HOM05D000924 ORTHO05D001209 2.6e-25 119.0 62 85.5
VMungo1080G0748 Vigna mungo HOM05D000924 ORTHO05D001209 2.6e-25 119.0 62 87.1
Aa31LG6G12910 Aethionema arabicum HOM05D000924 ORTHO05D001209 3.5e-25 118.6 77 75.3
Ah.01g015930 Amaranthus hybridus HOM05D000924 ORTHO05D001209 3.5e-25 118.6 62 87.1
ATR0605G032 Amborella trichopoda HOM05D000924 ORTHO05D001209 3.5e-25 118.6 62 87.1
EL10Ac2g02545 Beta vulgaris HOM05D000924 ORTHO05D001209 3.5e-25 118.6 62 87.1
Ca_03699_v3 Cicer arietinum L. HOM05D000924 ORTHO05D001209 3.5e-25 118.6 60 90.0
TWI14G0143 Tripterygium wilfordii HOM05D000924 ORTHO05D001209 3.5e-25 118.6 77 74.0
Os02g0106966 Oryza sativa ssp. japonica HOM05D000924 ORTHO05D001209 4.5e-25 118.2 61 86.9
Potri.015G095500 Populus trichocarpa HOM05D000924 ORTHO05D001209 4.5e-25 118.2 62 85.5
Sabra15G0116500 Salix brachista HOM05D000924 ORTHO05D001209 4.5e-25 118.2 62 85.5
SEGI_01233 Sequoiadendron giganteum HOM05D000924 ORTHO05D001209 4.5e-25 118.2 62 87.1
TAR381G1514 Trochodendron aralioides HOM05D000924 ORTHO05D001209 4.5e-25 118.2 62 88.7
Zm00001eb328850 Zea mays HOM05D000924 ORTHO05D001209 4.5e-25 118.2 61 86.9
Aqoxy3G02568 Aquilegia oxysepala HOM05D000924 ORTHO05D001209 5.9e-25 117.9 62 85.5
Lj3g0017691 Lotus japonicus HOM05D000924 ORTHO05D001209 5.9e-25 117.9 62 85.5
Lalb_Chr25g0285181 Lupinus albus HOM05D000924 ORTHO05D001209 5.9e-25 117.9 62 85.5
ClCG05G006710 Citrullus lanatus HOM05D000924 ORTHO05D001209 7.7e-25 117.5 77 72.7
DCAR_003081 Daucus carota HOM05D000924 ORTHO05D001209 7.7e-25 117.5 62 87.1
RcHm_v2.0_Chr7g0209461 Rosa chinensis HOM05D000924 ORTHO05D001209 7.7e-25 117.5 60 88.3
TPR.G10336 Trifolium pratense HOM05D000924 ORTHO05D001209 7.7e-25 117.5 60 88.3
CAN.G1095.6 Capsicum annuum HOM05D000924 ORTHO05D001209 1.0e-24 117.1 62 87.1
Rhsim06G0001600 Rhododendron simsii HOM05D000924 ORTHO05D001209 1.0e-24 117.1 61 88.5
Eucgr.F01825 Eucalyptus grandis HOM05D000924 ORTHO05D001209 1.3e-24 116.7 77 71.4
MSTRG.1010 Avicennia marina HOM05D000924 ORTHO05D001209 1.7e-24 116.3 58 91.4
Ciclev10010890m.g Citrus clementina HOM05D000924 ORTHO05D001209 1.7e-24 116.3 60 86.7
Cfa014157 Carpinus fangiana HOM05D000924 ORTHO05D001209 2.2e-24 115.9 77 71.4
HanXRQChr17g0533721 Helianthus annuus HOM05D000924 ORTHO05D001209 2.2e-24 115.9 62 83.9
Solyc06g082100.4 Solanum lycopersicum HOM05D000924 ORTHO05D001209 2.2e-24 115.9 62 85.5
Sopen06g033490 Solanum pennellii HOM05D000924 ORTHO05D001209 2.2e-24 115.9 62 85.5
PGSC0003DMG400030366 Solanum tuberosum HOM05D000924 ORTHO05D001209 2.2e-24 115.9 62 85.5
CSS0036316 Camellia sinensis var. sinensis HOM05D000924 ORTHO05D001209 2.9e-24 115.5 62 85.5
Lsat_1_v5_gn_3_7501 Lactuca sativa HOM05D000924 ORTHO05D001209 2.9e-24 115.5 62 85.5
arahy.Tifrunner.gnm1.ann1.1JT8J9 Arachis hypogaea HOM05D000924 ORTHO05D001209 3.8e-24 115.2 62 82.3
arahy.Tifrunner.gnm1.ann1.JY4JA5 Arachis hypogaea HOM05D000924 ORTHO05D001209 3.8e-24 115.2 62 82.3
arahy.Tifrunner.gnm1.ann1.L2QDU1 Arachis hypogaea HOM05D000924 ORTHO05D001209 3.8e-24 115.2 62 82.3
ECA246G0163 Erigeron canadensis HOM05D000924 ORTHO05D001209 3.8e-24 115.2 62 83.9
Migut.C00343 Erythranthe guttata HOM05D000924 ORTHO05D001209 3.8e-24 115.2 58 91.4
Lj5A314T76 Lonicera japonica HOM05D000924 ORTHO05D001209 3.8e-24 115.2 62 83.9
QL04p003238 Quercus lobata HOM05D000924 ORTHO05D001209 3.8e-24 115.2 62 83.9
Haze_22879 Corylus avellana HOM05D000924 ORTHO05D001209 5.0e-24 114.8 77 71.4
Nitab4.5_0005694g0030 Nicotiana tabacum HOM05D000924 ORTHO05D001209 5.0e-24 114.8 62 83.9
Nitab4.5_0008569g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 5.0e-24 114.8 62 83.9
SMO347G0607 Selaginella moellendorffii HOM05D000924 ORTHO05D001209 5.0e-24 114.8 62 83.9
Nn6g31594 Nelumbo nucifera HOM05D000924 ORTHO05D001209 6.5e-24 114.4 62 83.9
Pp3c1_35880 Physcomitrium patens HOM05D000924 ORTHO05D001209 6.5e-24 114.4 77 71.4
MELO3C006732.2 Cucumis melo HOM05D000924 ORTHO05D001209 8.5e-24 114.0 77 71.4
CsaV3_3G015340 Cucumis sativus L. HOM05D000924 ORTHO05D001209 8.5e-24 114.0 77 71.4
CiPaw.07G131100 Carya illinoinensis HOM05D000924 ORTHO05D001209 1.1e-23 113.6 77 70.1
MD04G1240400 Malus domestica HOM05D000924 ORTHO05D001209 1.1e-23 113.6 60 85.0
MD12G1257300 Malus domestica HOM05D000924 ORTHO05D001209 1.1e-23 113.6 60 85.0
Prupe.6G358100 Prunus persica HOM05D000924 ORTHO05D001209 1.1e-23 113.6 60 85.0
Atru.chr13.29 Acer truncatum HOM05D000924 ORTHO05D001209 1.5e-23 113.2 62 82.3
Actinidia17090 Actinidia chinensis HOM05D000924 ORTHO05D001209 1.5e-23 113.2 62 82.3
Medtr2g064740 Medicago truncatula HOM05D000924 ORTHO05D001209 1.5e-23 113.2 60 85.0
Cc02_g28440 Coffea canephora HOM05D000924 ORTHO05D001209 1.9e-23 112.8 77 67.5
Dinv10292 Davidia involucrata HOM05D000924 ORTHO05D001209 1.9e-23 112.8 77 70.1
Dinv32321 Davidia involucrata HOM05D000924 ORTHO05D001209 1.9e-23 112.8 77 70.1
PSO063G7524 Papaver somniferum HOM05D000924 ORTHO05D001209 1.9e-23 112.8 58 87.9
PSO782G5199 Papaver somniferum HOM05D000924 ORTHO05D001209 1.9e-23 112.8 58 87.9
GSVIVG01010769001 Vitis vinifera HOM05D000924 ORTHO05D001209 1.9e-23 112.8 77 70.1
Lj5C314G2 Lonicera japonica HOM05D000924 ORTHO05D001209 2.5e-23 112.5 62 82.3
SGA_v2.0_scaffold161G37860 Striga asiatica HOM05D000924 ORTHO05D001209 2.5e-23 112.5 58 87.9
Sed0004818 Sechium edule HOM05D000924 ORTHO05D001209 3.2e-23 112.1 77 71.4
TWI36G0693 Tripterygium wilfordii HOM05D000924 ORTHO05D001209 3.2e-23 112.1 77 70.1
Hma1.2p1_0914F.1_g236150 Hydrangea macrophylla HOM05D000924 ORTHO05D001209 4.2e-23 111.7 58 87.9
FvH4_5g21940 Fragaria vesca HOM05D000924 ORTHO05D001209 7.2e-23 110.9 75 68.0
FAN08G2720 Fragaria x ananassa HOM05D000924 ORTHO05D001209 7.2e-23 110.9 75 68.0
FAN13G1554 Fragaria x ananassa HOM05D000924 ORTHO05D001209 7.2e-23 110.9 75 68.0
FAN18G2116 Fragaria x ananassa HOM05D000924 ORTHO05D001209 7.2e-23 110.9 75 68.0
Peaxi162Scf00064g01426 Petunia axillaris HOM05D000924 ORTHO05D001209 7.2e-23 110.9 58 87.9
TPR.G25887 Trifolium pratense HOM05D000924 ORTHO05D001209 7.2e-23 110.9 60 85.0
Lsat_1_v5_gn_3_7441 Lactuca sativa HOM05D000924 ORTHO05D001209 9.4e-23 110.5 63 84.1
Haze_17095 Corylus avellana HOM05D000924 ORTHO05D001209 1.6e-22 109.8 77 68.8
Potri.012G097300 Populus trichocarpa HOM05D000924 ORTHO05D001209 3.6e-22 108.6 62 79.0
TAR369G0929 Trochodendron aralioides HOM05D000924 ORTHO05D001209 8.0e-22 107.5 84 71.4
CBR_g70690 Chara braunii HOM05D000924 ORTHO05D001209 4.0e-21 105.1 74 68.9
vmacro14714 Vaccinium macrocarpon HOM05D000924 ORTHO05D001209 4.0e-21 105.1 64 82.8
COL.COLO4_18725 Corchorus olitorius HOM05D000924 ORTHO05D001209 6.7e-21 104.4 63 81.0
Nitab4.5_0000110g0580 Nicotiana tabacum HOM05D000924 ORTHO05D001209 6.7e-21 104.4 62 74.2
Nitab4.5_0004954g0020 Nicotiana tabacum HOM05D000924 ORTHO05D001209 6.7e-21 104.4 62 74.2
ATR1127G181 Amborella trichopoda HOM05D000924 ORTHO05D001209 5.7e-20 101.3 77 59.7
CANSAT78G0159 Cannabis sativa HOM05D000924 ORTHO05D001209 7.4e-20 100.9 59 83.1
Migut.N01909 Erythranthe guttata HOM05D000924 ORTHO05D001209 7.4e-20 100.9 58 81.0
C05p19630 Brassica napus HOM05D000924 ORTHO05D028009 1.7e-19 99.8 62 80.6
FAN05G2437 Fragaria x ananassa HOM05D000924 ORTHO05D001209 2.8e-19 99.0 60 75.0
FAN14G0455 Fragaria x ananassa HOM05D000924 ORTHO05D001209 3.7e-19 98.6 60 75.0
BcaC05g26004 Brassica carinata HOM05D000924 ORTHO05D001209 4.8e-19 98.2 77 64.9
FvH4_6g00860 Fragaria vesca HOM05D000924 ORTHO05D001209 1.4e-18 96.7 60 73.3
FAN09G1765 Fragaria x ananassa HOM05D000924 ORTHO05D001209 1.8e-18 96.3 60 73.3
CARHR137320 Cardamine hirsuta HOM05D000924 ORTHO05D001209 9.1e-18 94.0 63 74.6
Nitab4.5_0003811g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 1.6e-17 93.2 105 50.5
QL10p013857 Quercus lobata HOM05D000924 ORTHO05D001209 1.6e-17 93.2 62 74.2
AL4G40630 Arabidopsis lyrata HOM05D000924 ORTHO05D001209 1.3e-16 90.1 63 71.4
Cc05_g03360 Coffea canephora HOM05D000924 ORTHO05D001209 2.9e-16 89.0 60 73.3
AT2G42270 Arabidopsis thaliana HOM05D000924 ORTHO05D001209 3.8e-16 88.6 63 69.8
Carub.0004s2461 Capsella rubella HOM05D000924 ORTHO05D001209 1.9e-15 86.3 58 70.7
Ciclev10004124m.g Citrus clementina HOM05D000924 ORTHO05D001209 9.4e-15 84.0 60 66.7
ClCG05G013070 Citrullus lanatus HOM05D000924 ORTHO05D001209 3.6e-14 82.0 79 50.6
RcHm_v2.0_Chr2g0166221 Rosa chinensis HOM05D000924 ORTHO05D001209 5.2e-13 78.2 60 66.7
AL5G18660 Arabidopsis lyrata HOM05D000924 ORTHO05D001209 2.6e-12 75.9 77 54.5
BcaC01g05308 Brassica carinata HOM05D000924 ORTHO05D001209 1.7e-11 73.2 65 64.6
C03p28130 Brassica napus HOM05D000924 ORTHO05D001209 1.7e-11 73.2 65 64.6
BolC3t15183H Brassica oleracea HOM05D000924 ORTHO05D001209 1.7e-11 73.2 65 64.6
FvH4_6g47191 Fragaria vesca HOM05D000924 ORTHO05D001209 2.2e-11 72.8 51 66.7
FAN14G3354 Fragaria x ananassa HOM05D000924 ORTHO05D001209 2.2e-11 72.8 51 66.7
Cre17.g744147 Chlamydomonas reinhardtii HOM05D000924 ORTHO05D001209 6.3e-11 71.2 96 47.9
FAN09G2563 Fragaria x ananassa HOM05D000924 ORTHO05D001209 6.3e-11 71.2 51 64.7
Medtr4g011450 Medicago truncatula HOM05D000924 ORTHO05D001209 8.3e-11 70.9 58 63.8
BraA08t33566Z Brassica rapa HOM05D000924 ORTHO05D001209 2.4e-10 69.3 48 64.6
Nitab4.5_0002503g0090 Nicotiana tabacum HOM05D000924 ORTHO05D001209 2.0e-09 66.2 105 40.0
FAN13G2240 Fragaria x ananassa HOM05D000924 ORTHO05D001209 4.5e-09 65.1 44 65.9
HPP92_014733 Vanilla planifolia HOM05D000924 ORTHO05D001209 5.0e-08 61.6 104 40.4


User provided reference genes

Program Settings