Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 3.2e-37 157.9 79 100.0
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 4.3e-34 147.5 77 94.8
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 2.4e-24 115.2 77 79.2
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 9.0e-24 113.2 69 81.2
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 2.0e-23 112.1 58 93.1
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 2.6e-23 111.7 57 91.2
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 2.6e-23 111.7 57 91.2
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 2.6e-23 111.7 57 91.2
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 2.6e-23 111.7 57 91.2
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 2.6e-23 111.7 57 91.2
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 2.9e-22 108.2 69 78.3
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 4.9e-22 107.5 69 78.3
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 4.9e-22 107.5 57 89.5
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 4.9e-22 107.5 57 89.5
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 4.9e-22 107.5 57 89.5
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 8.4e-22 106.7 57 87.7
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 8.4e-22 106.7 57 87.7
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 1.1e-21 106.3 69 76.8
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 1.1e-21 106.3 57 86.0
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 1.2e-20 102.8 68 70.6
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 2.1e-20 102.1 68 72.1
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 4.6e-20 100.9 68 69.1
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 7.8e-20 100.1 69 69.6
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 1.0e-19 99.8 69 68.1
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.0e-19 99.8 69 68.1
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.0e-19 99.8 69 68.1
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.0e-19 99.8 69 68.1
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.0e-19 99.8 69 68.1
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 1.0e-19 99.8 68 70.6
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 1.0e-19 99.8 69 68.1
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 1.3e-19 99.4 68 69.1
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 1.7e-19 99.0 69 66.7
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 1.7e-19 99.0 55 80.0
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 1.7e-19 99.0 69 68.1
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 2.3e-19 98.6 69 66.7
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 2.3e-19 98.6 68 64.7
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 2.3e-19 98.6 68 69.1
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 3.0e-19 98.2 68 67.6
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 3.0e-19 98.2 69 66.7
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 3.0e-19 98.2 69 68.1
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 3.0e-19 98.2 68 69.1
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 3.9e-19 97.8 68 69.1
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.9e-19 97.8 68 69.1
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 3.9e-19 97.8 69 65.2
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 3.9e-19 97.8 68 66.2
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 3.9e-19 97.8 69 66.7
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 3.9e-19 97.8 69 68.1
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 5.1e-19 97.4 68 67.6
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 5.1e-19 97.4 68 67.6
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 5.1e-19 97.4 68 66.2
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 5.1e-19 97.4 69 65.2
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 5.1e-19 97.4 68 67.6
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 5.1e-19 97.4 68 67.6
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 5.1e-19 97.4 67 68.7
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 5.1e-19 97.4 55 78.2
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 6.6e-19 97.1 68 64.7
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 6.6e-19 97.1 69 65.2
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 8.7e-19 96.7 68 67.6
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 8.7e-19 96.7 69 68.1
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 8.7e-19 96.7 69 68.1
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 8.7e-19 96.7 68 66.2
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 1.1e-18 96.3 69 66.7
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 1.5e-18 95.9 57 75.4
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 1.5e-18 95.9 69 65.2
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 1.5e-18 95.9 69 65.2
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 1.5e-18 95.9 69 65.2
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 1.5e-18 95.9 69 65.2
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 1.9e-18 95.5 69 63.8
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 2.5e-18 95.1 69 65.2
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 2.5e-18 95.1 69 65.2
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 2.5e-18 95.1 69 65.2
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 2.5e-18 95.1 69 63.8
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 2.5e-18 95.1 57 75.4
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 2.5e-18 95.1 75 61.3
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 2.5e-18 95.1 75 61.3
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 3.3e-18 94.7 69 65.2
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 3.3e-18 94.7 69 65.2
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 3.3e-18 94.7 68 66.2
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 3.3e-18 94.7 56 76.8
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 4.3e-18 94.4 69 63.8
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 4.3e-18 94.4 69 63.8
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 4.3e-18 94.4 69 63.8
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 5.6e-18 94.0 68 66.2
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 5.6e-18 94.0 68 64.7
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 5.6e-18 94.0 68 64.7
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 5.6e-18 94.0 69 65.2
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 5.6e-18 94.0 69 65.2
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 7.3e-18 93.6 69 63.8
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 7.3e-18 93.6 68 64.7
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 9.6e-18 93.2 68 66.2
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 9.6e-18 93.2 68 63.2
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 9.6e-18 93.2 69 63.8
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 1.3e-17 92.8 68 61.8
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 2.1e-17 92.0 68 63.2
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 2.1e-17 92.0 68 64.7
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 2.1e-17 92.0 68 64.7
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 2.8e-17 91.7 68 60.3
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 2.8e-17 91.7 68 63.2
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 2.8e-17 91.7 69 63.8
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 4.8e-17 90.9 69 63.8
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 6.2e-17 90.5 68 63.2
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 6.2e-17 90.5 69 62.3
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 1.1e-16 89.7 69 62.3
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.4e-16 89.4 57 70.2
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.4e-16 89.4 57 70.2
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 2.4e-16 88.6 68 64.7
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 3.1e-16 88.2 69 60.9
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 4.0e-16 87.8 68 63.2
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 5.3e-16 87.4 69 60.9
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 6.9e-16 87.0 68 63.2
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 6.9e-16 87.0 69 62.3
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 9.0e-16 86.7 69 60.9
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 1.2e-15 86.3 69 60.9
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 1.2e-15 86.3 69 59.4
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 2.0e-15 85.5 55 69.1
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 9.9e-15 83.2 69 59.4
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 1.3e-14 82.8 56 69.6
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 2.2e-14 82.0 55 74.5
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 3.8e-14 81.3 60 61.7
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 6.4e-14 80.5 51 68.6
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 8.4e-14 80.1 56 60.7
BolC7t41958H Brassica oleracea HOM05D003924 ORTHO05D020089 6.0e-12 73.9 38 97.4
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 9.0e-08 60.1 53 52.8
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.5e-07 59.3 50 52.0


User provided reference genes

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