Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p14090 Brassica napus HOM05D000207 ORTHO05D004956 3.6e-82 308.1 150 100.0
C04p41370 Brassica napus HOM05D000207 ORTHO05D000606 7.1e-46 187.6 107 86.9
BcaC06g35508 Brassica carinata HOM05D000207 ORTHO05D004956 1.2e-45 186.8 88 100.0
A04p07690 Brassica napus HOM05D000207 ORTHO05D000606 1.2e-45 186.8 88 100.0
A07p09140 Brassica napus HOM05D000207 ORTHO05D004956 1.2e-45 186.8 88 100.0
Thhalv10021852m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 1.2e-45 186.8 88 100.0
THA.LOC104808632 Tarenaya hassleriana HOM05D000207 ORTHO05D004956 2.1e-45 186.0 88 97.7
BcaB02g08614 Brassica carinata HOM05D000207 ORTHO05D000606 2.7e-45 185.7 90 97.8
BcaC02g09324 Brassica carinata HOM05D000207 ORTHO05D004956 2.7e-45 185.7 88 98.9
CARHR099290 Cardamine hirsuta HOM05D000207 ORTHO05D004956 2.7e-45 185.7 88 98.9
Thhalv10026688m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 2.7e-45 185.7 88 98.9
Sp3g20990 Schrenkiella parvula HOM05D000207 ORTHO05D004956 2.7e-45 185.7 88 98.9
BolC7t41906H Brassica oleracea HOM05D000207 ORTHO05D004956 3.5e-45 185.3 88 98.9
BraA07t28708Z Brassica rapa HOM05D000207 ORTHO05D004956 3.5e-45 185.3 88 98.9
Cc03_g05640 Coffea canephora HOM05D000207 ORTHO05D004956 3.5e-45 185.3 88 97.7
Duzib235G1015 Durio zibethinus HOM05D000207 ORTHO05D004956 3.5e-45 185.3 88 97.7
Gohir.A05G111600 Gossypium hirsutum HOM05D000207 ORTHO05D004956 3.5e-45 185.3 88 97.7
Gohir.D05G112000 Gossypium hirsutum HOM05D000207 ORTHO05D004956 3.5e-45 185.3 88 97.7
Gorai.009G116200 Gossypium raimondii HOM05D000207 ORTHO05D004956 3.5e-45 185.3 88 97.7
Nitab4.5_0001379g0120 Nicotiana tabacum HOM05D000207 ORTHO05D004956 3.5e-45 185.3 88 97.7
Nitab4.5_0003038g0050 Nicotiana tabacum HOM05D000207 ORTHO05D004956 3.5e-45 185.3 88 97.7
Hund03049 Selenicereus undatus HOM05D000207 ORTHO05D004956 3.5e-45 185.3 88 97.7
Sopen04g004070 Solanum pennellii HOM05D000207 ORTHO05D004956 3.5e-45 185.3 88 97.7
PGSC0003DMG400025301 Solanum tuberosum HOM05D000207 ORTHO05D004956 3.5e-45 185.3 88 97.7
Duzib043G0002 Durio zibethinus HOM05D000207 ORTHO05D004956 4.6e-45 184.9 88 96.6
Duzib160G0169 Durio zibethinus HOM05D000207 ORTHO05D004956 4.6e-45 184.9 88 96.6
Potri.008G168000 Populus trichocarpa HOM05D000207 ORTHO05D004956 4.6e-45 184.9 88 97.7
Sp7g12410 Schrenkiella parvula HOM05D000207 ORTHO05D004956 6.0e-45 184.5 88 97.7
Sopen08g022730 Solanum pennellii HOM05D000207 ORTHO05D004956 6.0e-45 184.5 88 96.6
Atru.chr4.2043 Acer truncatum HOM05D000207 ORTHO05D004956 7.8e-45 184.1 88 97.7
Atru.chr4.2046 Acer truncatum HOM05D000207 ORTHO05D004956 7.8e-45 184.1 88 97.7
AL7G41900 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 7.8e-45 184.1 88 97.7
BolC4t25716H Brassica oleracea HOM05D000207 ORTHO05D004956 7.8e-45 184.1 88 97.7
CANSAT54G2786 Cannabis sativa HOM05D000207 ORTHO05D004956 7.8e-45 184.1 88 96.6
Carub.0003s2357 Capsella rubella HOM05D000207 ORTHO05D004956 7.8e-45 184.1 88 97.7
HanXRQChr03g0091521 Helianthus annuus HOM05D000207 ORTHO05D004956 7.8e-45 184.1 88 96.6
HanXRQChr13g0421281 Helianthus annuus HOM05D000207 ORTHO05D004956 7.8e-45 184.1 88 96.6
Manes.15G041801 Manihot esculenta HOM05D000207 ORTHO05D004956 7.8e-45 184.1 88 97.7
Solyc04g008890.3 Solanum lycopersicum HOM05D000207 ORTHO05D004956 7.8e-45 184.1 88 96.6
GSVIVG01027834001 Vitis vinifera HOM05D000207 ORTHO05D004956 7.8e-45 184.1 88 96.6
Ciclev10013219m.g Citrus clementina HOM05D000207 ORTHO05D004956 1.0e-44 183.7 88 97.7
Potri.010G070500 Populus trichocarpa HOM05D000207 ORTHO05D004956 1.0e-44 183.7 88 96.6
PGR031G0434 Punica granatum HOM05D000207 ORTHO05D004956 1.0e-44 183.7 88 96.6
Solyc08g069080.4 Solanum lycopersicum HOM05D000207 ORTHO05D004956 1.0e-44 183.7 88 96.6
Thecc.06G005500 Theobroma cacao HOM05D000207 ORTHO05D004956 1.0e-44 183.7 88 96.6
TWI53G1374 Tripterygium wilfordii HOM05D000207 ORTHO05D004956 1.0e-44 183.7 88 96.6
MELO3C007190.2 Cucumis melo HOM05D000207 ORTHO05D004956 1.3e-44 183.3 88 95.5
Sed0003648 Sechium edule HOM05D000207 ORTHO05D004956 1.3e-44 183.3 88 96.6
Sed0023527 Sechium edule HOM05D000207 ORTHO05D004956 1.3e-44 183.3 88 96.6
Hund11897 Selenicereus undatus HOM05D000207 ORTHO05D004956 1.3e-44 183.3 88 96.6
CANSAT78G1427 Cannabis sativa HOM05D000207 ORTHO05D004956 1.7e-44 183.0 88 95.5
TAR365G0659 Trochodendron aralioides HOM05D000207 ORTHO05D004956 1.7e-44 183.0 88 95.5
Aqoxy1G01024 Aquilegia oxysepala HOM05D000207 ORTHO05D004956 2.3e-44 182.6 88 95.5
AL3G37970 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 2.3e-44 182.6 88 96.6
AT3G23325 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 2.3e-44 182.6 88 96.6
AT4G14342 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 2.3e-44 182.6 88 96.6
CSS0020261 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004956 2.3e-44 182.6 88 96.6
Eucgr.E04319 Eucalyptus grandis HOM05D000207 ORTHO05D004956 2.3e-44 182.6 88 96.6
Nn1g06872 Nelumbo nucifera HOM05D000207 ORTHO05D004956 2.3e-44 182.6 88 96.6
ClCG01G024000 Citrullus lanatus HOM05D000207 ORTHO05D004956 3.0e-44 182.2 88 95.5
COL.COLO4_26870 Corchorus olitorius HOM05D000207 ORTHO05D004956 3.9e-44 181.8 88 94.3
MELO3C006416.2 Cucumis melo HOM05D000207 ORTHO05D004956 3.9e-44 181.8 88 95.5
CsaV3_3G012020 Cucumis sativus L. HOM05D000207 ORTHO05D004956 3.9e-44 181.8 88 95.5
Os08g0444100 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 3.9e-44 181.8 88 95.5
Sc25g0003710 Simmondsia chinensis HOM05D000207 ORTHO05D004956 3.9e-44 181.8 86 97.7
AUR62026315 Chenopodium quinoa HOM05D000207 ORTHO05D004956 5.1e-44 181.4 86 96.5
AUR62026510 Chenopodium quinoa HOM05D000207 ORTHO05D004956 5.1e-44 181.4 86 96.5
Ciclev10006856m.g Citrus clementina HOM05D000207 ORTHO05D004956 5.1e-44 181.4 89 93.3
Lsat_1_v5_gn_3_117461 Lactuca sativa HOM05D000207 ORTHO05D004956 5.1e-44 181.4 88 94.3
Os08g0278966 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 5.1e-44 181.4 88 95.5
Actinidia39908 Actinidia chinensis HOM05D000207 ORTHO05D004956 6.6e-44 181.0 88 95.5
PSO170G5684 Papaver somniferum HOM05D000207 ORTHO05D004956 6.6e-44 181.0 88 94.3
PSO198G0064 Papaver somniferum HOM05D000207 ORTHO05D004956 6.6e-44 181.0 88 94.3
PSO210G1216 Papaver somniferum HOM05D000207 ORTHO05D004956 6.6e-44 181.0 88 94.3
ECA232G2626 Erigeron canadensis HOM05D000207 ORTHO05D004956 8.7e-44 180.6 88 93.2
ECA240G3918 Erigeron canadensis HOM05D000207 ORTHO05D004956 8.7e-44 180.6 88 93.2
PGSC0003DMG400026872 Solanum tuberosum HOM05D000207 ORTHO05D004956 8.7e-44 180.6 89 96.6
MSTRG.21917 Avicennia marina HOM05D000207 ORTHO05D004956 1.1e-43 180.3 92 89.1
CDE06G2823 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 1.1e-43 180.3 88 94.3
ClCG05G004290 Citrullus lanatus HOM05D000207 ORTHO05D004956 1.1e-43 180.3 88 94.3
CsaV3_6G051140 Cucumis sativus L. HOM05D000207 ORTHO05D004956 1.5e-43 179.9 86 95.3
DCAR_024259 Daucus carota HOM05D000207 ORTHO05D004956 1.5e-43 179.9 88 93.2
Dinv27061 Davidia involucrata HOM05D000207 ORTHO05D004956 1.5e-43 179.9 88 94.3
Migut.N00279 Erythranthe guttata HOM05D000207 ORTHO05D004956 1.5e-43 179.9 88 93.2
MD03G1200200 Malus domestica HOM05D000207 ORTHO05D004956 1.5e-43 179.9 88 93.2
unitig_748.g7329 Utricularia gibba HOM05D000207 ORTHO05D000606 1.5e-43 179.9 88 94.3
PSO210G6748 Papaver somniferum HOM05D000207 ORTHO05D004956 2.5e-43 179.1 88 92.0
Prupe.4G214000 Prunus persica HOM05D000207 ORTHO05D004956 2.5e-43 179.1 88 93.2
Mapoly0001s0403 Marchantia polymorpha HOM05D000207 ORTHO05D004956 3.3e-43 178.7 88 94.3
Lalb_Chr02g0158811 Lupinus albus HOM05D000207 ORTHO05D004956 4.3e-43 178.3 88 92.0
Glyma.18G132700 Glycine max HOM05D000207 ORTHO05D004956 5.6e-43 177.9 88 93.2
Hma1.2p1_0992F.1_g245270 Hydrangea macrophylla HOM05D000207 ORTHO05D004956 5.6e-43 177.9 87 93.1
Lsat_1_v5_gn_6_103061 Lactuca sativa HOM05D000207 ORTHO05D004956 5.6e-43 177.9 86 94.2
CiPaw.02G111100 Carya illinoinensis HOM05D000207 ORTHO05D004956 7.3e-43 177.6 88 93.2
FAN25G2312 Fragaria x ananassa HOM05D000207 ORTHO05D004956 7.3e-43 177.6 88 92.0
Lj3g0015983 Lotus japonicus HOM05D000207 ORTHO05D004956 7.3e-43 177.6 88 92.0
MD11G1217300 Malus domestica HOM05D000207 ORTHO05D004956 7.3e-43 177.6 88 90.9
Phvul.003G055200 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 7.3e-43 177.6 88 93.2
HPP92_005049 Vanilla planifolia HOM05D000207 ORTHO05D004956 7.3e-43 177.6 86 94.2
RcHm_v2.0_Chr5g0039761 Rosa chinensis HOM05D000207 ORTHO05D004956 9.6e-43 177.2 88 92.0
Ca_08207_v3 Cicer arietinum L. HOM05D000207 ORTHO05D004956 1.6e-42 176.4 88 90.9
Migut.G00508 Erythranthe guttata HOM05D000207 ORTHO05D004956 1.6e-42 176.4 88 90.9
Psat4g126040 Pisum sativum HOM05D000207 ORTHO05D004956 1.6e-42 176.4 88 90.9
Psat6g018880 Pisum sativum HOM05D000207 ORTHO05D004956 1.6e-42 176.4 88 90.9
Actinidia11350 Actinidia chinensis HOM05D000207 ORTHO05D004956 2.1e-42 176.0 88 93.2
FvH4_3g22750 Fragaria vesca HOM05D000207 ORTHO05D004956 2.1e-42 176.0 88 90.9
FvH4_7g05750 Fragaria vesca HOM05D000207 ORTHO05D004956 2.1e-42 176.0 88 90.9
FAN16G2624 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.1e-42 176.0 88 90.9
FAN16G2286 Fragaria x ananassa HOM05D000207 ORTHO05D004956 3.6e-42 175.3 90 88.9
Dinv36552 Davidia involucrata HOM05D000207 ORTHO05D004956 6.2e-42 174.5 86 94.2
Glyma.08G291500 Glycine max HOM05D000207 ORTHO05D004956 6.2e-42 174.5 86 93.0
AagrBONN_evm.TU.Sc2ySwM_344.2015 Anthoceros agrestis HOM05D000207 ORTHO05D004956 8.1e-42 174.1 88 89.8
Medtr8g062750 Medicago truncatula HOM05D000207 ORTHO05D004956 1.1e-41 173.7 88 88.6
CBR_g8906 Chara braunii HOM05D000207 ORTHO05D004956 1.4e-41 173.3 88 90.9
FAN14G2395 Fragaria x ananassa HOM05D000709 ORTHO05D004956 1.8e-41 172.9 91 85.7
SMO232G0034 Selaginella moellendorffii HOM05D000207 ORTHO05D004956 1.8e-41 172.9 87 90.8
Medtr3g019300 Medicago truncatula HOM05D000207 ORTHO05D004956 3.1e-41 172.2 88 88.6
Medtr3g019310 Medicago truncatula HOM05D000207 ORTHO05D004956 3.1e-41 172.2 88 88.6
FAN05G5047 Fragaria x ananassa HOM05D000709 ORTHO05D004956 1.2e-40 170.2 91 84.6
MBI07_g16899_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 3.4e-40 168.7 108 77.8
FAN09G1394 Fragaria x ananassa HOM05D000709 ORTHO05D004956 4.5e-40 168.3 88 86.4
FAN01G2221 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.9e-39 165.6 104 76.9
FAN02G2410 Fragaria x ananassa HOM05D000709 ORTHO05D004956 3.8e-39 165.2 91 82.4
vmacro15450 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 4.9e-39 164.9 109 75.2
MCO09G487 Micromonas commoda HOM05D000207 ORTHO05D004956 1.3e-36 156.8 86 82.6
Phvul.009G163800 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 1.3e-36 156.8 76 93.4
BraA04t16461Z Brassica rapa HOM05D000207 ORTHO05D000606 1.9e-35 152.9 73 98.6
Zm00001eb176950 Zea mays HOM05D000207 ORTHO05D004956 2.5e-35 152.5 72 100.0
Sabra10G0036900 Salix brachista HOM05D000207 ORTHO05D004956 3.3e-35 152.1 80 88.8
vmacro21393 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 4.3e-35 151.8 85 87.1
Aa31LG9G3040 Aethionema arabicum HOM05D001185 ORTHO05D002551 7.4e-35 151.0 72 98.6
EL10Ac3g04993 Beta vulgaris HOM05D000001 ORTHO05D000003 7.4e-35 151.0 72 97.2
Oeu005091.1 Olea europaea HOM05D000207 ORTHO05D004956 7.4e-35 151.0 72 97.2
Sabra08G0128000 Salix brachista HOM05D000207 ORTHO05D004956 9.6e-35 150.6 72 97.2
HPP92_005064 Vanilla planifolia HOM05D000207 ORTHO05D004956 9.6e-35 150.6 78 88.5
Cpa.g.c34811.1 Carica papaya HOM05D000207 ORTHO05D004956 1.3e-34 150.2 72 97.2
vmacro21388 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 1.3e-34 150.2 74 93.2
QL06p018332 Quercus lobata HOM05D000207 ORTHO05D004956 2.1e-34 149.4 72 95.8
SalBow3G2895 Salvia bowleyana HOM05D000207 ORTHO05D004956 2.1e-34 149.4 76 90.8
VMungo1127G0964 Vigna mungo HOM05D000207 ORTHO05D004956 2.1e-34 149.4 76 90.8
PGSC0003DMG400029581 Solanum tuberosum HOM05D000207 ORTHO05D004956 3.7e-34 148.7 72 94.4
arahy.Tifrunner.gnm1.ann1.AU04TH Arachis hypogaea HOM05D000207 ORTHO05D004956 6.2e-34 147.9 72 95.8
arahy.Tifrunner.gnm1.ann1.DCT04E Arachis hypogaea HOM05D000207 ORTHO05D004956 6.2e-34 147.9 72 95.8
arahy.Tifrunner.gnm1.ann1.Q94Q39 Arachis hypogaea HOM05D000677 ORTHO05D000727 6.2e-34 147.9 83 88.0
CiPaw.01G183100 Carya illinoinensis HOM05D000207 ORTHO05D004956 8.1e-34 147.5 72 94.4
FAN06G2225 Fragaria x ananassa HOM05D000207 ORTHO05D004956 2.4e-33 146.0 77 85.7
PSO063G3293 Papaver somniferum HOM05D000207 ORTHO05D004956 3.1e-33 145.6 72 91.7
RcHm_v2.0_Chr7g0179491 Rosa chinensis HOM05D000207 ORTHO05D004956 3.1e-33 145.6 80 83.8
Cfa022948 Carpinus fangiana HOM05D000411 ORTHO05D004956 6.9e-33 144.4 79 84.8
PRCOL_00006150 Prasinoderma coloniale HOM05D000207 ORTHO05D004956 6.9e-33 144.4 88 73.9
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 9.0e-33 144.1 70 95.7
Cre14.g627900 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D004956 1.2e-32 143.7 83 73.5
FAN03G1535 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.2e-32 143.7 71 91.5
FAN10G1241 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.2e-32 143.7 71 91.5
arahy.Tifrunner.gnm1.ann1.6C1XPZ Arachis hypogaea HOM05D000207 ORTHO05D004956 1.7e-31 139.8 70 92.9
unitig_32.g11701 Utricularia gibba HOM05D000207 ORTHO05D004956 1.1e-30 137.1 97 73.2
MBI16_g42515_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 3.2e-30 135.6 93 73.1
CAN.G274.30 Capsicum annuum HOM05D000207 ORTHO05D004956 1.9e-27 126.3 61 93.4
MD12G1011100 Malus domestica HOM05D000207 ORTHO05D004956 5.6e-27 124.8 81 76.5
vmacro12999 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 6.2e-26 121.3 64 89.1
A06p07840 Brassica napus HOM05D000207 ORTHO05D004956 1.1e-25 120.6 59 94.9
CDE02G4280 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 1.8e-25 119.8 57 93.0
Lj4g0019776 Lotus japonicus HOM05D000207 ORTHO05D004956 5.3e-25 118.2 88 68.2
VMungo0251G1197 Vigna mungo HOM05D000207 ORTHO05D004956 7.6e-24 114.4 55 94.5
AagrBONN_evm.TU.Sc2ySwM_369.181 Anthoceros agrestis HOM05D000207 ORTHO05D004956 8.4e-23 110.9 57 82.5
Lj4g0025571 Lotus japonicus HOM05D000207 ORTHO05D004956 5.5e-22 108.2 78 70.5
Pp3c25_1640 Physcomitrium patens HOM05D000207 ORTHO05D004956 2.7e-21 105.9 56 80.4
Gohir.1Z049411 Gossypium hirsutum HOM05D000207 ORTHO05D004956 6.0e-21 104.8 58 86.2
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 5.3e-17 91.7 46 84.8
A09p67600 Brassica napus HOM05D000207 ORTHO05D004956 2.6e-16 89.4 41 97.6
Eucgr.L00218 Eucalyptus grandis HOM05D000207 ORTHO05D004956 2.2e-15 86.3 47 85.1
AagrBONN_evm.TU.Sc2ySwM_344.4872 Anthoceros agrestis HOM05D000170 ORTHO05D000159 5.1e-12 75.1 38 89.5
vmacro16885 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 5.7e-11 71.6 39 84.6
Peaxi162Scf00681g00334 Petunia axillaris HOM05D000207 ORTHO05D004956 5.3e-09 65.1 31 96.8
Zm00001eb114180 Zea mays HOM05D000207 ORTHO05D004956 1.2e-08 63.9 38 81.6
Ah.14g081440 Amaranthus hybridus HOM05D000207 ORTHO05D004956 4.5e-08 62.0 36 75.0
MBI13_g27727_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 5.9e-08 61.6 31 90.3
C03p51290 Brassica napus HOM05D004419 ORTHO05D005480 6.5e-07 58.2 29 89.7


User provided reference genes

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