Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 3.1e-232 808.1 414 100.0
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 5.2e-232 807.4 414 99.5
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 5.2e-232 807.4 414 99.5
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 2.6e-231 805.1 414 99.3
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 4.4e-231 804.3 414 99.8
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 3.0e-227 791.6 426 96.2
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 5.1e-227 790.8 414 97.3
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 6.6e-227 790.4 414 97.3
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.5e-226 789.3 426 96.0
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.5e-226 789.3 426 96.0
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.3e-226 787.7 414 96.9
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 2.8e-225 785.0 414 96.6
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 4.7e-225 784.3 414 96.6
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.3e-222 776.2 414 95.2
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 8.1e-217 756.9 414 94.0
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 5.4e-213 744.2 414 90.3
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 2.1e-212 742.3 414 90.8
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 4.6e-212 741.1 416 92.5
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 4.3e-202 708.0 414 86.5
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 1.1e-200 703.4 414 85.7
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 1.2e-199 699.9 414 86.0
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 1.7e-198 696.0 409 85.8
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 1.1e-197 693.3 414 84.1
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 1.4e-197 693.0 414 83.3
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 3.0e-195 685.3 414 83.3
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 1.5e-194 682.9 418 86.1
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.9e-194 682.6 414 82.1
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 2.5e-194 682.2 414 83.6
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 2.5e-194 682.2 414 83.6
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 2.5e-194 682.2 414 81.9
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.6e-194 681.0 414 81.6
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 5.6e-194 681.0 414 82.1
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 9.6e-194 680.2 416 83.4
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.3e-193 679.9 414 81.6
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 1.6e-193 679.5 414 82.9
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 2.1e-193 679.1 414 82.4
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 3.7e-193 678.3 410 83.2
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 6.2e-193 677.6 414 82.1
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 3.1e-192 675.2 414 82.1
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 3.1e-192 675.2 414 81.9
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 5.3e-192 674.5 413 82.1
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 1.2e-191 673.3 414 81.2
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 3.4e-191 671.8 411 82.7
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 6.5e-190 667.5 413 80.9
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 5.5e-189 664.5 414 81.6
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 5.5e-189 664.5 413 81.1
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 7.1e-189 664.1 414 81.2
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 2.1e-188 662.5 409 80.4
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 2.1e-188 662.5 414 80.9
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 3.5e-188 661.8 413 80.9
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 3.5e-188 661.8 414 81.4
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 6.0e-188 661.0 414 80.0
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 1.3e-187 659.8 414 80.4
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 1.3e-187 659.8 445 76.4
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 2.3e-187 659.1 414 80.0
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.3e-187 659.1 411 80.5
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 6.7e-187 657.5 409 81.9
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 6.7e-187 657.5 413 80.1
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.1e-186 656.8 411 80.8
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 2.5e-186 655.6 411 80.5
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 4.3e-186 654.8 411 80.0
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 7.4e-186 654.1 413 79.7
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 2.8e-185 652.1 415 80.0
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 4.8e-185 651.4 414 79.0
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 4.8e-185 651.4 413 80.4
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 4.1e-184 648.3 414 78.7
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 5.3e-184 647.9 413 79.4
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 5.3e-184 647.9 414 79.2
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 2.0e-183 646.0 414 78.7
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.0e-182 643.7 413 78.5
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.7e-182 642.9 413 77.7
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 1.7e-182 642.9 414 78.5
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 2.9e-182 642.1 413 80.1
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 5.0e-182 641.3 410 78.3
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 8.4e-182 640.6 413 77.5
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 4.2e-181 638.3 414 77.8
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 5.5e-181 637.9 414 77.8
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 5.5e-181 637.9 416 78.1
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 5.1e-179 631.3 420 76.9
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 8.7e-179 630.6 420 76.4
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.5e-178 629.8 412 77.4
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 3.3e-178 628.6 415 78.3
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 5.7e-178 627.9 375 84.5
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 5.7e-178 627.9 371 85.4
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 2.2e-177 625.9 430 74.7
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 8.2e-177 624.0 439 73.6
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 5.3e-176 621.3 410 77.6
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 4.6e-172 608.2 415 74.5
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 6.1e-172 607.8 415 74.7
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 2.8e-169 599.0 413 70.2
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 8.2e-169 597.4 414 74.9
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 4.5e-167 591.7 305 98.4
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.0e-166 590.5 415 72.5
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 3.6e-164 582.0 410 74.4
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 4.7e-164 581.6 406 74.1
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 6.3e-161 571.2 414 71.5
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 5.0e-158 561.6 371 77.6
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 1.1e-157 560.5 411 72.3
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 3.3e-154 548.9 410 66.8
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 1.3e-153 547.0 410 66.8
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 4.2e-149 531.9 485 62.3
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 5.5e-149 531.6 323 82.7
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 3.0e-147 525.8 412 68.2
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 6.5e-142 508.1 313 85.3
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.5e-141 506.9 398 64.6
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 1.4e-139 500.4 405 59.5
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 6.8e-139 498.0 412 60.7
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.5e-135 485.7 282 85.8
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.7e-134 483.4 282 85.5
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 5.0e-134 481.9 296 80.7
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.1e-125 454.1 284 83.8
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 7.5e-122 441.4 256 85.9
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 4.7e-116 422.2 292 79.8
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.9e-112 410.2 256 77.7
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 4.3e-109 399.1 314 66.2
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 4.7e-108 395.6 285 71.2
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 4.0e-99 365.9 415 47.7
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.8e-90 335.5 238 73.1
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 8.1e-84 315.1 191 81.7
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.2e-80 302.8 199 77.4
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 1.8e-78 297.4 205 74.6
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 2.8e-76 290.0 184 78.3
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.8e-70 270.8 204 71.1
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.3e-69 266.5 173 76.3
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 5.1e-62 242.7 399 36.8
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.3e-61 239.6 199 70.4
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-58 231.1 126 89.7
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.3e-57 228.0 403 34.0
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.9e-57 226.9 161 78.3
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 8.5e-57 225.3 220 54.5
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.2e-55 221.5 139 80.6
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.1e-55 220.7 177 72.3
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 6.1e-55 219.2 321 36.1
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.9e-49 200.3 114 89.5
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 3.6e-47 193.4 121 76.9
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 1.7e-41 174.5 102 82.4
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 3.1e-35 153.7 414 30.7
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.0e-33 148.7 83 84.3
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.6e-31 140.2 80 83.8
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 8.3e-28 129.0 107 58.9
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 2.0e-26 124.4 115 60.9
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 2.9e-25 120.6 127 62.2
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 1.1e-24 118.6 143 54.5
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 4.7e-23 113.2 146 53.4
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.1e-19 100.5 72 77.8
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 5.4e-19 99.8 99 57.6
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 6.6e-17 92.8 153 38.6
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.5e-16 90.9 51 84.3
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.1e-15 86.3 75 62.7
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 4.9e-12 76.6 54 75.9
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.3e-09 67.8 57 61.4
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.9e-08 64.7 38 81.6
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 1.6e-07 61.6 81 44.4
Cfa025229 Carpinus fangiana HOM05D004528 ORTHO05D005815 5.2e-06 56.6 309 24.3


User provided reference genes

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