Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 0.0e+00 2353.6 1346 100.0
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 0.0e+00 2340.1 1348 99.5
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 0.0e+00 2209.9 1355 92.9
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 0.0e+00 2187.5 1355 91.7
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 0.0e+00 1827.4 1387 79.5
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 0.0e+00 1788.9 1368 76.4
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 0.0e+00 1728.8 1373 75.3
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 0.0e+00 1727.6 1380 74.5
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 0.0e+00 1714.9 1373 73.9
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 0.0e+00 1714.5 1388 73.9
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 0.0e+00 1695.6 1367 74.7
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 0.0e+00 1694.9 1362 74.4
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 0.0e+00 1691.0 1362 74.1
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 0.0e+00 1691.0 1362 74.1
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 0.0e+00 1686.8 1362 74.1
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 0.0e+00 1662.5 1266 75.6
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 0.0e+00 1575.5 1387 69.2
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 0.0e+00 1379.0 1160 69.1
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 0.0e+00 1345.1 1187 65.7
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 1.0e-284 984.2 1446 49.9
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 1.3e-276 957.2 1438 49.9
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 2.3e-273 946.4 1436 47.8
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 7.5e-272 941.4 1446 48.3
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 4.9e-271 938.7 1419 47.0
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 3.2e-270 936.0 1425 46.7
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 4.6e-269 932.2 1418 46.0
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 1.0e-268 931.0 1415 45.2
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 7.3e-267 924.9 1404 49.6
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.8e-265 920.2 1402 49.5
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 2.0e-264 916.8 1429 46.5
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 2.6e-264 916.4 1453 46.7
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 8.3e-263 911.4 1416 48.9
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 7.8e-261 904.8 1425 47.4
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 1.7e-260 903.7 1424 48.7
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 3.3e-259 899.4 1429 47.3
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 9.5e-259 897.9 1402 46.4
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 5.8e-256 888.6 1448 46.5
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 2.9e-255 886.3 1388 45.5
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 3.8e-255 885.9 1424 47.5
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.1e-254 884.4 1433 47.4
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 2.4e-254 883.2 1419 45.0
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 3.2e-254 882.9 1414 47.5
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 4.1e-254 882.5 1354 50.2
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 7.1e-254 881.7 1415 47.4
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.2e-253 880.9 1441 45.3
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 1.6e-253 880.6 1436 45.3
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 2.7e-253 879.8 1409 44.0
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 2.0e-248 863.6 1476 46.3
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 7.6e-248 861.7 1475 45.5
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 1.7e-247 860.5 1405 45.8
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 1.7e-247 860.5 1414 45.0
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 3.8e-247 859.4 1472 46.9
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 6.4e-247 858.6 1393 45.6
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 1.9e-246 857.1 1406 45.3
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 3.2e-246 856.3 1419 45.2
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 3.2e-246 856.3 1428 46.1
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 3.5e-245 852.8 1395 45.1
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 1.5e-243 847.4 1423 45.9
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 4.3e-243 845.9 1398 46.1
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 1.6e-242 844.0 1422 46.6
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 1.1e-241 841.3 1415 45.2
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 1.8e-241 840.5 1403 45.3
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 4.5e-240 835.9 1419 45.6
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 4.5e-240 835.9 1354 47.8
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 3.8e-239 832.8 1390 45.0
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 3.0e-236 823.2 1402 44.7
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 3.9e-236 822.8 1405 44.6
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 5.1e-236 822.4 1410 46.3
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 1.5e-235 820.8 1392 45.3
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 1.4e-233 814.3 1400 44.2
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 2.0e-232 810.4 1414 45.9
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 4.5e-232 809.3 1399 44.3
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 2.2e-231 807.0 1393 43.5
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 1.2e-229 801.2 1211 49.5
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 2.1e-226 790.4 1413 43.7
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 8.2e-226 788.5 1213 44.6
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 8.2e-226 788.5 1396 43.8
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 2.9e-223 780.0 1415 46.4
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 3.5e-221 773.1 1248 48.6
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 1.0e-220 771.5 1236 43.4
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 1.4e-217 761.1 1437 43.6
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 2.4e-217 760.4 1424 43.5
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 3.8e-215 753.1 1355 45.2
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 8.8e-212 741.9 1420 41.2
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 1.9e-211 740.7 1221 44.9
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 7.4e-211 738.8 1391 42.6
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 4.8e-210 736.1 1548 41.0
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 4.8e-210 736.1 1413 41.1
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 4.5e-208 729.6 1149 46.4
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 1.4e-206 724.5 1465 42.7
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.2e-206 723.0 1148 43.4
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 3.9e-204 716.5 1385 40.5
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 7.0e-201 705.7 946 47.6
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 2.6e-200 703.7 1467 43.1
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 3.5e-200 703.4 776 55.0
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 1.7e-199 701.0 1026 45.5
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 1.9e-198 697.6 892 48.1
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 9.1e-193 678.7 1427 41.1
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 2.2e-183 647.5 1403 41.5
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 2.2e-183 647.5 1505 39.9
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 5.5e-182 642.9 1261 39.5
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 1.6e-181 641.3 1525 39.8
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 5.2e-180 636.3 1382 41.9
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 5.5e-174 616.3 1413 38.3
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 1.4e-172 611.7 1383 41.4
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 4.0e-172 610.1 1028 43.0
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 2.2e-170 604.4 1385 37.0
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 1.0e-164 585.5 1290 39.7
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.8e-164 584.7 1108 45.9
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 1.5e-158 565.1 1402 39.5
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.9e-158 564.7 903 44.5
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 3.3e-158 563.9 1029 40.4
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 3.7e-154 550.4 1174 37.6
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 4.3e-150 537.0 1058 43.6
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 1.7e-143 515.0 998 39.5
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.3e-142 510.4 1132 39.0
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 6.0e-136 490.0 1415 35.4
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.3e-134 483.8 804 43.2
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 1.9e-129 468.4 1217 36.9
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 9.6e-126 456.1 776 44.6
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 2.7e-120 438.0 1126 34.7
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 1.8e-116 425.2 531 49.3
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 5.8e-107 393.7 1225 33.7
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 6.1e-104 383.6 1293 33.1
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.0e-95 356.3 1406 31.2
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.1e-86 326.2 1424 30.3
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 1.3e-85 322.8 945 38.9
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.3e-79 302.0 310 52.9
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 1.5e-78 299.3 412 43.9
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 5.3e-76 290.8 1263 28.1
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 4.5e-75 287.7 1437 29.2
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 8.3e-69 266.9 1230 28.9
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 1.1e-65 256.5 484 38.4
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 3.5e-59 235.0 333 43.8
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 3.4e-54 218.4 893 28.0
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 3.2e-52 211.8 136 81.6
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 3.5e-51 208.4 1079 27.0
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 6.2e-48 197.6 1160 29.0
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 4.0e-47 194.9 365 36.4
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 6.8e-47 194.1 1200 26.7
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 1.2e-46 193.4 445 36.0
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 3.7e-45 188.3 834 25.9
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 4.6e-43 181.4 317 37.9
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 7.8e-43 180.6 256 43.8
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 6.6e-42 177.6 197 50.8
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 7.3e-41 174.1 208 51.4
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 2.1e-40 172.6 208 48.1
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 3.1e-39 168.7 1093 28.1
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 8.9e-39 167.2 226 43.4
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 2.2e-37 162.5 177 50.3
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 1.4e-36 159.8 397 32.0
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 1.4e-36 159.8 1033 26.8
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 7.1e-36 157.5 978 25.6
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.4e-31 143.3 684 26.8
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 1.2e-30 140.2 1083 24.7
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 9.9e-30 137.1 154 48.7
C04p42890 Brassica napus HOM05D001675 ORTHO05D021664 7.1e-28 131.0 91 76.9
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 2.7e-27 129.0 521 29.4
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 3.3e-25 122.1 604 36.9
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 1.2e-24 120.2 1002 23.2
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 1.6e-24 119.8 257 32.7
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 2.8e-24 119.0 149 42.3
BolC4t25858H Brassica oleracea HOM05D001675 ORTHO05D001808 7.6e-22 110.9 102 64.7
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 3.5e-19 102.1 162 32.1
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 1.1e-17 97.1 120 48.3
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 7.3e-17 94.4 98 50.0
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 1.3e-16 93.6 270 43.7
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 3.6e-16 92.0 82 54.9
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 3.6e-16 92.0 128 39.1
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 2.0e-14 86.3 940 20.7
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 3.4e-14 85.5 229 37.1
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 4.4e-14 85.1 88 51.1
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 7.6e-14 84.3 1099 23.1
BcaC02g11963 Brassica carinata HOM05D001675 ORTHO05D021664 1.7e-13 83.2 56 76.8
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.2e-11 77.0 88 55.7
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 1.2e-11 77.0 86 44.2
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.1e-11 76.3 351 33.0
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 2.5e-09 69.3 69 53.6
Os10g0391100 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004075 4.0e-07 62.0 261 34.5


User provided reference genes

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