Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 6.2e-230 800.4 401 100.0
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 4.0e-152 542.0 268 100.0
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 8.8e-152 540.8 268 99.6
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 1.2e-151 540.4 268 99.3
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 2.4e-149 532.7 272 98.2
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 5.9e-148 528.1 273 96.7
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 1.3e-147 526.9 272 96.7
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 6.5e-147 524.6 273 95.6
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 1.5e-146 523.5 276 95.3
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 1.9e-146 523.1 272 96.0
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 2.1e-145 519.6 272 96.0
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 8.0e-145 517.7 272 95.2
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 1.8e-144 516.5 280 93.2
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.5e-143 513.5 272 94.5
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 2.6e-143 512.7 277 93.5
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 4.4e-143 511.9 272 94.9
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 4.4e-143 511.9 270 95.2
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 4.4e-143 511.9 272 94.5
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 7.5e-143 511.1 272 94.5
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 9.2e-141 504.2 363 74.9
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 4.3e-138 495.4 270 92.2
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 2.1e-137 493.0 272 89.3
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 6.1e-137 491.5 268 91.4
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 6.1e-137 491.5 272 89.0
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 1.4e-136 490.3 272 89.7
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 4.0e-136 488.8 272 89.0
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 5.2e-136 488.4 272 89.3
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 6.8e-136 488.0 272 89.7
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 8.9e-136 487.6 272 88.2
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 8.9e-136 487.6 272 87.9
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.0e-135 486.5 272 89.0
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 2.6e-135 486.1 270 90.4
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 3.4e-135 485.7 272 87.9
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 3.4e-135 485.7 272 89.0
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 3.4e-135 485.7 272 88.2
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 3.4e-135 485.7 268 89.2
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 4.4e-135 485.3 270 89.3
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 5.7e-135 485.0 272 87.5
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 5.7e-135 485.0 272 87.5
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 5.7e-135 485.0 272 87.9
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 9.8e-135 484.2 272 87.9
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 9.8e-135 484.2 272 87.9
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 9.8e-135 484.2 272 86.8
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.3e-134 483.8 272 87.5
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 1.7e-134 483.4 271 87.5
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 1.7e-134 483.4 275 86.9
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 2.2e-134 483.0 272 87.5
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 2.2e-134 483.0 266 88.7
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 2.9e-134 482.6 273 87.5
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 2.9e-134 482.6 271 88.9
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 2.9e-134 482.6 271 87.8
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 2.9e-134 482.6 272 88.6
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 3.7e-134 482.3 272 87.1
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 4.9e-134 481.9 272 85.7
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 4.9e-134 481.9 266 88.0
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 8.3e-134 481.1 272 87.1
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 8.3e-134 481.1 272 85.7
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 1.1e-133 480.7 272 87.9
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 1.4e-133 480.3 275 86.5
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 1.8e-133 479.9 272 86.4
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 2.4e-133 479.6 272 85.7
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 2.4e-133 479.6 272 86.0
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 3.2e-133 479.2 272 86.0
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 3.2e-133 479.2 266 87.6
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 4.1e-133 478.8 266 88.0
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 4.1e-133 478.8 266 89.1
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 4.1e-133 478.8 268 88.8
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 5.4e-133 478.4 272 86.4
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 5.4e-133 478.4 269 87.4
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 7.0e-133 478.0 266 87.6
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 9.2e-133 477.6 271 87.5
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 9.2e-133 477.6 271 86.3
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.2e-132 477.2 272 87.1
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 1.2e-132 477.2 271 86.0
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 1.2e-132 477.2 272 86.0
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 1.6e-132 476.9 272 86.0
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 1.6e-132 476.9 272 86.8
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 2.0e-132 476.5 271 86.3
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 2.7e-132 476.1 266 87.6
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.7e-132 476.1 272 86.4
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 2.7e-132 476.1 293 81.2
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 2.7e-132 476.1 270 88.1
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 3.5e-132 475.7 272 85.7
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 4.6e-132 475.3 271 86.3
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 4.6e-132 475.3 272 85.3
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 5.9e-132 474.9 272 86.4
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 5.9e-132 474.9 282 84.0
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 7.8e-132 474.6 272 86.0
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 1.7e-131 473.4 279 83.9
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 3.0e-131 472.6 272 86.0
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 3.9e-131 472.2 271 85.6
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 3.9e-131 472.2 271 85.6
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 3.9e-131 472.2 272 86.0
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 5.0e-131 471.9 271 86.0
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 6.6e-131 471.5 272 85.7
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 6.6e-131 471.5 272 85.7
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 6.6e-131 471.5 272 85.7
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 6.6e-131 471.5 271 86.3
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 1.1e-130 470.7 269 86.2
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 1.1e-130 470.7 271 85.6
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 2.5e-130 469.5 269 86.2
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 3.3e-130 469.2 280 83.9
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 3.3e-130 469.2 274 83.9
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 4.7e-129 465.3 272 83.5
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 4.7e-129 465.3 301 78.1
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 1.0e-128 464.2 281 84.7
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 1.4e-128 463.8 272 83.8
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 3.1e-128 462.6 259 88.4
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 5.2e-128 461.8 282 81.2
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 5.2e-128 461.8 282 81.2
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 8.9e-128 461.1 272 85.3
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 4.4e-127 458.8 272 82.4
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.1e-125 454.1 259 86.5
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.7e-123 446.8 272 83.8
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 3.0e-123 446.0 271 82.7
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.1e-122 444.1 345 68.1
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 1.5e-122 443.7 266 82.3
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 2.8e-121 439.5 289 79.9
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 2.8e-121 439.5 289 79.9
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 3.6e-121 439.1 253 84.6
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 3.6e-121 439.1 295 75.9
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 1.1e-120 437.6 253 84.2
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 4.0e-120 435.6 291 76.6
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 6.8e-120 434.9 238 90.8
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 4.4e-119 432.2 323 70.3
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 1.3e-118 430.6 240 88.8
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 3.7e-118 429.1 247 85.8
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 5.4e-117 425.2 242 87.2
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 9.2e-117 424.5 267 79.0
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 3.0e-115 419.5 239 87.9
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 4.3e-114 415.6 274 74.8
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 4.3e-114 415.6 253 79.8
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 4.4e-111 405.6 281 74.7
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 1.3e-110 404.1 270 70.4
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 8.4e-110 401.4 271 75.6
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 1.6e-108 397.1 272 75.4
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 4.6e-108 395.6 278 75.5
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 6.6e-99 365.2 271 67.2
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.1e-97 360.1 376 55.9
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 2.6e-95 353.2 201 85.6
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 7.9e-92 341.7 198 84.8
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 1.3e-91 340.9 275 66.9
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 4.6e-84 315.8 173 89.6
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 1.8e-83 313.9 174 85.6
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 1.1e-82 311.2 271 63.5
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 1.5e-82 310.8 268 62.7
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 2.1e-81 307.0 285 61.1
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 5.3e-72 275.8 243 62.6
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-67 261.5 152 80.3
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.5e-63 247.7 194 68.6
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 7.2e-61 238.8 256 46.9
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 5.2e-51 206.1 189 61.4
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 3.8e-46 189.9 131 74.8
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 3.8e-46 189.9 131 74.8
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 7.0e-32 142.5 128 61.7
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 2.1e-28 131.0 125 59.2
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 1.6e-23 114.8 72 70.8
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 3.5e-23 113.6 65 81.5
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 1.7e-22 111.3 78 70.5
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 3.8e-22 110.2 88 65.9
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 3.8e-22 110.2 88 65.9
C08p01790 Brassica napus HOM05D002773 ORTHO05D098729 8.6e-22 109.0 88 65.9
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 6.1e-20 102.8 64 78.1
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 7.8e-15 85.9 89 52.8
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 3.9e-14 83.6 45 88.9
C05p56420 Brassica napus HOM05D002773 ORTHO05D003110 1.8e-11 74.7 59 69.5
BolC5t34309H Brassica oleracea HOM05D002773 ORTHO05D003110 1.8e-11 74.7 59 69.5
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 3.4e-10 70.5 86 50.0
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 3.4e-10 70.5 86 50.0
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.1e-08 65.5 39 84.6
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 1.9e-08 64.7 33 87.9
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 1.0e-06 58.9 45 62.2
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 6.6e-06 56.2 32 81.2


User provided reference genes

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