Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 1.7e-44 182.2 88 100.0
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 1.7e-44 182.2 88 100.0
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 5.1e-44 180.6 88 98.9
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 4.3e-43 177.6 86 100.0
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 4.8e-42 174.1 84 100.0
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 1.1e-41 172.9 84 98.8
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 1.1e-41 172.9 84 98.8
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.8e-41 172.2 84 98.8
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 1.2e-40 169.5 84 97.6
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 3.4e-40 167.9 84 96.4
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 4.5e-40 167.5 85 95.3
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 4.5e-40 167.5 84 97.6
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 4.5e-40 167.5 84 97.6
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 3.8e-39 164.5 84 96.4
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 1.4e-38 162.5 84 94.0
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 3.2e-38 161.4 84 94.0
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 7.1e-38 160.2 86 91.9
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 9.3e-38 159.8 84 91.7
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 9.3e-38 159.8 84 91.7
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.2e-37 159.5 84 92.9
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 2.1e-37 158.7 84 91.7
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 2.7e-37 158.3 84 90.5
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.7e-37 158.3 84 90.5
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.7e-37 158.3 84 90.5
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 2.7e-37 158.3 84 90.5
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 2.7e-37 158.3 84 91.7
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 3.5e-37 157.9 84 91.7
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 3.5e-37 157.9 84 91.7
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 3.5e-37 157.9 84 91.7
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 3.5e-37 157.9 84 91.7
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 6.0e-37 157.1 87 88.5
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 7.9e-37 156.8 84 90.5
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 1.3e-36 156.0 84 90.5
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 1.8e-36 155.6 84 89.3
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 1.8e-36 155.6 84 90.5
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 3.0e-36 154.8 84 88.1
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 3.9e-36 154.5 84 88.1
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 5.1e-36 154.1 84 88.1
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 6.7e-36 153.7 84 89.3
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 6.7e-36 153.7 84 88.1
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 8.7e-36 153.3 84 89.3
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 8.7e-36 153.3 84 89.3
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 8.7e-36 153.3 84 89.3
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 8.7e-36 153.3 84 89.3
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 1.1e-35 152.9 84 88.1
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 1.1e-35 152.9 84 88.1
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 1.1e-35 152.9 84 89.3
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 1.1e-35 152.9 84 88.1
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 1.1e-35 152.9 84 89.3
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 1.1e-35 152.9 84 89.3
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 1.5e-35 152.5 84 88.1
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 1.5e-35 152.5 84 88.1
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.5e-35 152.5 84 89.3
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.5e-35 152.5 84 89.3
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 1.5e-35 152.5 84 89.3
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 2.5e-35 151.8 84 88.1
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 3.3e-35 151.4 84 88.1
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 3.3e-35 151.4 84 88.1
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 3.3e-35 151.4 84 86.9
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 3.3e-35 151.4 84 88.1
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 3.3e-35 151.4 84 86.9
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 3.3e-35 151.4 84 86.9
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 4.3e-35 151.0 84 85.7
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 4.3e-35 151.0 84 88.1
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 5.6e-35 150.6 83 84.3
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 5.6e-35 150.6 84 88.1
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 5.6e-35 150.6 84 85.7
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 9.6e-35 149.8 84 86.9
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 9.6e-35 149.8 84 86.9
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 1.3e-34 149.4 84 84.5
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 1.3e-34 149.4 84 86.9
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 1.6e-34 149.1 84 84.5
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 2.1e-34 148.7 85 88.2
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 2.1e-34 148.7 84 85.7
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 2.1e-34 148.7 84 85.7
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 2.8e-34 148.3 84 84.5
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 3.7e-34 147.9 84 84.5
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 3.7e-34 147.9 84 84.5
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 4.8e-34 147.5 84 83.3
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 6.2e-34 147.1 84 84.5
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 4.0e-33 144.4 84 82.1
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 5.3e-33 144.1 84 81.0
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 6.9e-33 143.7 111 68.5
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 1.5e-32 142.5 84 82.1
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 5.8e-32 140.6 91 79.1
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 2.9e-31 138.3 84 78.6
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 2.9e-31 138.3 84 78.6
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 2.9e-31 138.3 84 78.6
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 2.9e-31 138.3 84 76.2
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 3.8e-31 137.9 79 86.1
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 1.1e-30 136.3 84 76.2
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 1.4e-30 136.0 84 77.4
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 1.4e-30 136.0 84 77.4
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 3.2e-30 134.8 84 73.8
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 7.1e-30 133.7 84 76.2
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 9.3e-30 133.3 84 75.0
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 9.3e-30 133.3 84 76.2
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 1.9e-27 125.6 73 82.2
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 7.4e-27 123.6 81 72.8
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 7.4e-27 123.6 64 90.6
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 1.6e-26 122.5 64 93.8
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 4.8e-26 120.9 64 90.6
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 1.1e-25 119.8 71 77.5
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 2.4e-25 118.6 64 90.6
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 2.4e-25 118.6 83 74.7
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 1.2e-24 116.3 68 86.8
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 1.5e-24 115.9 66 80.3
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 4.5e-24 114.4 64 85.9
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 5.8e-24 114.0 64 87.5
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 1.7e-23 112.5 64 81.2
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 4.9e-23 110.9 64 84.4
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 4.9e-23 110.9 88 67.0
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 6.5e-23 110.5 73 69.9
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 4.2e-22 107.8 85 57.6
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.2e-21 106.3 87 65.5
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 1.3e-20 102.8 64 76.6
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 2.3e-20 102.1 84 65.5
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 2.3e-20 102.1 84 65.5
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 1.9e-19 99.0 64 71.9
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 1.6e-18 95.9 89 57.3
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 2.8e-18 95.1 84 52.4
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 2.2e-15 85.5 84 51.2
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 2.5e-14 82.0 45 84.4
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 3.2e-14 81.6 42 90.5
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 3.0e-12 75.1 43 83.7
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 3.0e-12 75.1 48 75.0
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 1.1e-11 73.2 38 86.8
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 4.8e-10 67.8 42 78.6


User provided reference genes

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