Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 3.1e-72 275.0 138 100.0
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 6.7e-59 230.7 138 88.4
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 7.0e-48 194.1 95 100.0
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 5.9e-47 191.0 93 100.0
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 2.2e-46 189.1 95 96.8
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 5.0e-46 188.0 95 95.8
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 3.2e-45 185.3 95 94.7
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 8.0e-44 180.6 95 92.6
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.0e-43 180.3 97 92.8
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 1.4e-43 179.9 95 92.6
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 4.0e-43 178.3 95 92.6
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 4.0e-43 178.3 95 92.6
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 4.0e-43 178.3 95 92.6
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 6.8e-43 177.6 105 81.9
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 3.4e-42 175.3 95 89.5
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 4.4e-42 174.9 96 91.7
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 5.7e-42 174.5 95 87.4
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 7.5e-42 174.1 95 86.3
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 9.8e-42 173.7 84 98.8
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 1.7e-41 172.9 95 88.4
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 2.8e-41 172.2 95 86.3
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 2.8e-41 172.2 95 86.3
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 2.8e-41 172.2 95 85.3
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 4.8e-41 171.4 95 85.3
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 4.8e-41 171.4 98 83.7
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 4.8e-41 171.4 95 87.4
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 6.3e-41 171.0 95 87.4
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 6.3e-41 171.0 95 87.4
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 6.3e-41 171.0 95 84.2
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 8.3e-41 170.6 95 87.4
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 8.3e-41 170.6 95 85.3
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.1e-40 170.2 95 87.4
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 1.1e-40 170.2 95 87.4
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 1.1e-40 170.2 95 84.2
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 1.1e-40 170.2 95 86.3
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 1.4e-40 169.9 95 86.3
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 1.4e-40 169.9 98 81.6
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 1.4e-40 169.9 95 85.3
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 1.4e-40 169.9 95 84.2
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 2.4e-40 169.1 97 85.6
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.4e-40 169.1 95 85.3
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 3.1e-40 168.7 95 86.3
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 5.4e-40 167.9 95 85.3
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 5.4e-40 167.9 101 85.1
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 5.4e-40 167.9 92 88.0
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 7.0e-40 167.5 95 85.3
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 9.1e-40 167.2 93 84.9
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 1.2e-39 166.8 94 83.0
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.2e-39 166.8 94 83.0
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 2.0e-39 166.0 93 90.3
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 2.0e-39 166.0 93 90.3
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 2.0e-39 166.0 98 80.6
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.0e-39 166.0 95 84.2
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 3.5e-39 165.2 94 81.9
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 4.5e-39 164.9 103 80.6
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 4.5e-39 164.9 95 83.2
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 4.5e-39 164.9 93 80.6
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 5.9e-39 164.5 95 84.2
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 5.9e-39 164.5 92 83.7
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 7.7e-39 164.1 94 83.0
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 7.7e-39 164.1 95 83.2
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 1.0e-38 163.7 94 83.0
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 5.0e-38 161.4 95 83.2
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 1.1e-37 160.2 106 76.4
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.9e-37 159.5 95 78.9
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 3.2e-37 158.7 94 78.7
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 3.2e-37 158.7 93 81.7
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 4.2e-37 158.3 84 91.7
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 4.2e-37 158.3 84 91.7
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 4.2e-37 158.3 84 91.7
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 5.5e-37 157.9 96 80.2
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 7.2e-37 157.5 95 78.9
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 7.2e-37 157.5 84 89.3
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 1.2e-36 156.8 89 84.3
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 1.2e-36 156.8 86 86.0
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 1.2e-36 156.8 86 86.0
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 2.1e-36 156.0 86 86.0
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 3.6e-36 155.2 89 83.1
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 4.7e-36 154.8 89 83.1
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 8.0e-36 154.1 93 78.5
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 1.4e-35 153.3 94 77.7
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 1.4e-35 153.3 94 77.7
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 2.3e-35 152.5 94 76.6
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 3.0e-35 152.1 94 76.6
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 5.2e-35 151.4 89 80.9
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 5.2e-35 151.4 89 80.9
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 8.8e-35 150.6 83 84.3
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 8.8e-35 150.6 95 71.6
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 3.4e-34 148.7 86 81.4
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 5.7e-34 147.9 120 64.2
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 1.3e-33 146.7 98 71.4
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 1.7e-33 146.4 89 76.4
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 4.9e-33 144.8 86 81.4
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 8.3e-33 144.1 94 76.6
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 1.4e-32 143.3 94 73.4
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 2.4e-32 142.5 86 74.4
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 2.0e-31 139.4 85 76.5
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 3.5e-31 138.7 75 92.0
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 2.5e-29 132.5 95 73.7
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 2.5e-29 132.5 104 65.4
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 3.3e-29 132.1 81 75.3
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 4.2e-29 131.7 75 88.0
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 7.2e-29 131.0 75 81.3
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 9.5e-29 130.6 75 86.7
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 8.0e-28 127.5 77 83.1
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 8.0e-28 127.5 75 84.0
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 2.3e-27 125.9 83 74.7
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 2.3e-27 125.9 75 82.7
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 1.5e-26 123.2 64 89.1
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 2.9e-25 119.0 69 79.7
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 1.4e-24 116.7 75 73.3
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 2.4e-24 115.9 69 82.6
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.0e-23 112.8 97 61.9
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 3.5e-23 112.1 97 62.9
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 7.8e-23 110.9 71 73.2
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 1.0e-22 110.5 73 69.9
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.3e-22 110.2 89 65.2
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 3.9e-22 108.6 78 69.2
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 7.3e-21 104.4 83 55.4
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 2.8e-20 102.4 92 57.6
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 8.9e-19 97.4 56 83.9
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 1.3e-17 93.6 85 49.4
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 5.4e-16 88.2 54 79.6
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 9.2e-16 87.4 42 92.9
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 1.2e-15 87.0 85 50.6
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 6.0e-15 84.7 58 69.0
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 1.2e-12 77.0 79 58.2
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 2.3e-11 72.8 43 79.1
Aa31LG10G1230 Aethionema arabicum HOM05D006077 ORTHO05D007499 3.2e-08 62.4 94 40.4
Aa31sc1971G10 Aethionema arabicum HOM05D006077 ORTHO05D007499 1.6e-07 60.1 94 39.4


User provided reference genes

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