Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p46930 Brassica napus HOM05D003678 ORTHO05D016118 1.8e-40 168.7 80 100.0
BolC5t33423H Brassica oleracea HOM05D003678 ORTHO05D016118 1.8e-40 168.7 80 100.0
BcaC05g28588 Brassica carinata HOM05D015584 ORTHO05D016118 1.8e-24 115.5 54 100.0
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 7.2e-13 77.0 36 97.2
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 7.2e-13 77.0 36 97.2
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 7.2e-13 77.0 36 97.2
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 7.2e-13 77.0 36 97.2
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 7.2e-13 77.0 36 97.2
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 7.2e-13 77.0 36 97.2
BcaC09g48197 Brassica carinata HOM05D003678 ORTHO05D011193 9.4e-13 76.6 46 82.6
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 1.6e-12 75.9 36 94.4
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 5.2e-11 70.9 36 88.9
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 5.2e-11 70.9 36 88.9
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 8.8e-11 70.1 36 86.1
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 8.8e-11 70.1 36 86.1
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 8.8e-11 70.1 36 86.1
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 8.8e-11 70.1 36 86.1
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 1.1e-10 69.7 36 86.1
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 1.1e-10 69.7 36 86.1
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 1.1e-10 69.7 36 86.1
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 1.1e-10 69.7 36 86.1
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 2.0e-10 68.9 36 83.3
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 2.6e-10 68.6 36 83.3
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 2.6e-10 68.6 36 83.3
BcaC06g31298 Brassica carinata HOM05D003678 ORTHO05D004340 4.4e-10 67.8 36 80.6
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 5.7e-10 67.4 36 80.6
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 5.7e-10 67.4 36 80.6
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 5.7e-10 67.4 33 87.9
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 5.7e-10 67.4 35 82.9
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 9.7e-10 66.6 36 80.6
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 9.7e-10 66.6 36 80.6
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 9.7e-10 66.6 36 80.6
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 9.7e-10 66.6 36 77.8
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 9.7e-10 66.6 36 77.8
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 1.7e-09 65.9 29 100.0
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 1.7e-09 65.9 29 100.0
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 1.7e-09 65.9 36 77.8
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 2.2e-09 65.5 36 83.3
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 2.2e-09 65.5 36 83.3
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 2.2e-09 65.5 49 57.1
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 2.2e-09 65.5 36 83.3
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 2.8e-09 65.1 36 77.8
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 4.8e-09 64.3 36 80.6
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 4.8e-09 64.3 36 80.6
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 4.8e-09 64.3 36 80.6
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 4.8e-09 64.3 36 80.6
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 4.8e-09 64.3 36 80.6
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 4.8e-09 64.3 36 75.0
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 4.8e-09 64.3 36 75.0
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 6.3e-09 63.9 35 77.1
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 6.3e-09 63.9 35 77.1
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 6.3e-09 63.9 36 75.0
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 6.3e-09 63.9 36 75.0
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 6.3e-09 63.9 36 75.0
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 6.3e-09 63.9 36 75.0
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 6.3e-09 63.9 36 75.0
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 6.3e-09 63.9 36 75.0
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 6.3e-09 63.9 36 75.0
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 8.2e-09 63.5 36 72.2
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 8.2e-09 63.5 33 81.8
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 1.1e-08 63.2 35 77.1
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 1.4e-08 62.8 36 72.2
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 1.4e-08 62.8 36 75.0
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 1.4e-08 62.8 29 96.6
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 1.4e-08 62.8 36 72.2
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 1.4e-08 62.8 36 72.2
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 1.4e-08 62.8 35 74.3
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 1.4e-08 62.8 35 74.3
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 1.4e-08 62.8 35 74.3
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.4e-08 62.8 36 72.2
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.4e-08 62.8 36 72.2
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 2.4e-08 62.0 42 64.3
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 2.4e-08 62.0 33 81.8
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 3.1e-08 61.6 36 72.2
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 3.1e-08 61.6 36 72.2
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 3.1e-08 61.6 36 72.2
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 4.1e-08 61.2 36 69.4
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 4.1e-08 61.2 36 69.4
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 4.1e-08 61.2 32 81.2
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 5.3e-08 60.8 33 75.8
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 5.3e-08 60.8 36 72.2
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 5.3e-08 60.8 36 72.2
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 5.3e-08 60.8 36 72.2
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 5.3e-08 60.8 36 72.2
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 5.3e-08 60.8 36 72.2
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 7.0e-08 60.5 36 72.2
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 7.0e-08 60.5 32 81.2
BcaB03g16788 Brassica carinata HOM05D003678 ORTHO05D004340 9.1e-08 60.1 30 80.0
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 9.1e-08 60.1 29 89.7
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 9.1e-08 60.1 36 69.4
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 9.1e-08 60.1 36 72.2
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 9.1e-08 60.1 35 71.4
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 1.2e-07 59.7 36 69.4
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.2e-07 59.7 36 69.4
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 1.2e-07 59.7 35 71.4
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 1.2e-07 59.7 35 71.4
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 1.2e-07 59.7 35 71.4
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 1.2e-07 59.7 35 71.4
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 1.2e-07 59.7 31 80.6
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 1.2e-07 59.7 32 81.2
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 1.2e-07 59.7 32 81.2
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 1.2e-07 59.7 33 75.8
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 1.2e-07 59.7 33 75.8
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 1.2e-07 59.7 33 75.8
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 1.2e-07 59.7 33 75.8
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 1.6e-07 59.3 35 74.3
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 1.6e-07 59.3 35 71.4
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 1.6e-07 59.3 35 71.4
CAN.G4.3 Capsicum annuum HOM05D003678 ORTHO05D004340 1.6e-07 59.3 33 72.7
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 1.6e-07 59.3 35 71.4
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 1.6e-07 59.3 32 75.0
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 1.6e-07 59.3 33 75.8
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 1.6e-07 59.3 30 83.3
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 1.6e-07 59.3 30 83.3
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 1.6e-07 59.3 36 72.2
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 2.0e-07 58.9 36 69.4
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 2.0e-07 58.9 33 78.8
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 2.0e-07 58.9 35 71.4
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 2.0e-07 58.9 35 68.6
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 2.7e-07 58.5 35 71.4
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 2.7e-07 58.5 36 66.7
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 2.7e-07 58.5 36 66.7
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 2.7e-07 58.5 36 66.7
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 2.7e-07 58.5 35 74.3
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 3.5e-07 58.2 36 66.7
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 3.5e-07 58.2 36 69.4
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 4.5e-07 57.8 33 75.8
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 4.5e-07 57.8 33 75.8
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 4.5e-07 57.8 33 75.8
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 4.5e-07 57.8 32 78.1
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 4.5e-07 57.8 36 66.7
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 4.5e-07 57.8 36 66.7
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 5.9e-07 57.4 35 68.6
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 7.7e-07 57.0 35 71.4
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 7.7e-07 57.0 35 71.4
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 1.0e-06 56.6 32 78.1
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 1.0e-06 56.6 32 78.1
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 1.0e-06 56.6 32 78.1
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.0e-06 56.6 36 66.7
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.0e-06 56.6 36 66.7
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.0e-06 56.6 36 66.7
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.0e-06 56.6 36 66.7
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 1.3e-06 56.2 37 67.6
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 1.3e-06 56.2 36 69.4
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 1.3e-06 56.2 36 66.7
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 1.7e-06 55.8 35 65.7
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 2.2e-06 55.5 35 68.6
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 2.9e-06 55.1 48 52.1
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 2.9e-06 55.1 36 63.9
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 3.8e-06 54.7 35 68.6
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 6.5e-06 53.9 27 85.2


User provided reference genes

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