Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 2.5e-151 538.9 297 100.0
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 2.5e-151 538.9 297 100.0
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 2.5e-151 538.9 297 100.0
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 1.4e-149 533.1 298 98.3
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 3.0e-149 531.9 298 97.7
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 1.7e-147 526.2 299 96.3
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 1.7e-144 516.2 298 94.3
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 2.7e-137 492.3 299 90.0
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 3.4e-132 475.3 300 83.3
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 9.8e-132 473.8 299 83.6
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.6e-129 466.5 301 86.4
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 3.0e-128 462.2 301 84.1
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 1.9e-127 459.5 301 83.1
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 4.3e-127 458.4 301 83.7
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 1.6e-126 456.4 301 86.0
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 2.8e-126 455.7 299 85.3
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 2.9e-123 445.7 302 80.1
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 3.7e-123 445.3 301 77.4
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 8.3e-123 444.1 304 78.9
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.1e-122 443.7 300 79.0
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 4.1e-122 441.8 301 78.4
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 5.4e-122 441.4 300 79.7
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 9.2e-122 440.7 300 79.0
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 9.2e-122 440.7 300 79.0
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 9.2e-122 440.7 303 81.8
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.2e-121 440.3 302 79.1
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 2.1e-121 439.5 302 80.1
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 7.8e-121 437.6 299 79.9
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 3.9e-120 435.3 304 75.0
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 5.1e-120 434.9 304 74.7
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 8.6e-120 434.1 303 78.2
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 1.5e-119 433.3 300 74.7
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.5e-119 433.3 296 79.7
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 3.3e-119 432.2 304 76.3
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 3.3e-119 432.2 304 76.3
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 4.3e-119 431.8 304 76.3
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 7.3e-119 431.0 300 76.7
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 7.3e-119 431.0 304 77.0
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 9.5e-119 430.6 304 76.0
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 1.6e-118 429.9 300 79.7
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 3.6e-118 428.7 305 75.7
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 3.6e-118 428.7 297 76.8
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 4.7e-118 428.3 300 76.3
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 6.2e-118 427.9 302 76.2
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 6.2e-118 427.9 300 76.7
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 8.1e-118 427.6 304 78.3
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 1.4e-117 426.8 301 77.1
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 1.4e-117 426.8 300 79.3
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 1.4e-117 426.8 304 74.7
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 2.3e-117 426.0 297 77.1
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 3.1e-117 425.6 300 76.3
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 6.8e-117 424.5 304 73.7
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 8.9e-117 424.1 298 74.2
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 8.9e-117 424.1 301 78.7
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 8.9e-117 424.1 304 74.7
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 1.5e-116 423.3 302 80.8
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 1.5e-116 423.3 304 76.0
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 2.0e-116 422.9 302 72.2
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 3.4e-116 422.2 303 77.6
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 5.8e-116 421.4 304 75.0
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 7.5e-116 421.0 304 75.0
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 9.9e-116 420.6 300 71.3
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 1.3e-115 420.2 297 77.4
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 1.7e-115 419.9 302 72.2
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 2.2e-115 419.5 300 72.7
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 2.9e-115 419.1 304 75.0
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 2.9e-115 419.1 302 75.2
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 4.9e-115 418.3 296 75.3
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 6.4e-115 417.9 299 71.9
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 6.4e-115 417.9 301 73.8
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 8.3e-115 417.5 304 74.7
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 8.3e-115 417.5 302 72.8
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 1.4e-114 416.8 301 77.1
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 5.4e-114 414.8 299 77.9
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 1.6e-113 413.3 301 76.1
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 2.1e-113 412.9 299 69.6
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 2.1e-113 412.9 301 74.4
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 3.5e-113 412.1 300 74.3
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 1.0e-112 410.6 303 76.9
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.0e-112 410.6 305 75.1
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 1.3e-112 410.2 297 73.1
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 3.0e-112 409.1 306 72.5
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 3.0e-112 409.1 306 72.5
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 3.0e-112 409.1 306 72.5
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 8.6e-112 407.5 303 71.0
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 8.6e-112 407.5 297 71.4
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 1.1e-111 407.1 297 70.4
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 1.1e-111 407.1 300 73.7
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.9e-111 406.4 297 70.7
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 1.9e-111 406.4 297 73.7
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 1.9e-111 406.4 301 70.4
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.5e-111 406.0 297 74.7
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 4.3e-111 405.2 299 68.9
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 5.6e-111 404.8 303 71.0
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 7.3e-111 404.4 303 71.3
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 7.3e-111 404.4 303 71.3
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 9.5e-111 404.1 302 71.2
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 1.2e-110 403.7 304 72.4
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 8.1e-110 401.0 303 71.0
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 1.1e-109 400.6 297 69.4
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 2.4e-109 399.4 283 74.9
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 6.8e-109 397.9 300 69.7
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 6.8e-109 397.9 297 69.7
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 8.9e-109 397.5 302 75.8
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.0e-108 396.4 297 73.7
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 4.4e-108 395.2 302 75.8
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.7e-105 386.0 294 69.7
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 2.3e-104 382.9 312 71.8
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 5.1e-104 381.7 297 66.3
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 5.6e-103 378.3 303 69.3
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 1.6e-102 376.7 299 65.9
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 2.2e-99 366.3 302 62.9
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.1e-98 364.0 276 73.2
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 1.3e-96 357.1 294 64.6
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.7e-96 356.7 247 77.7
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 6.6e-96 354.8 297 62.6
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 2.9e-91 339.3 287 65.9
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 9.3e-90 334.3 323 57.3
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 3.1e-85 319.3 301 55.1
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 4.6e-81 305.4 195 74.9
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 2.8e-78 296.2 247 69.6
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.4e-77 293.9 298 57.4
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 5.3e-77 292.0 298 53.0
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 2.5e-74 283.1 293 56.3
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 1.0e-67 261.2 298 52.7
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 3.2e-66 256.1 294 51.4
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 3.9e-64 249.2 134 88.8
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 6.7e-56 221.9 216 66.7
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.1e-53 214.5 195 60.0
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 1.5e-52 210.7 204 65.7
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.9e-50 203.8 274 52.2
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 9.4e-50 201.4 305 43.9
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 1.1e-47 194.5 289 43.3
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 3.2e-42 176.4 191 55.5
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 1.2e-41 174.5 198 50.0
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 4.0e-40 169.5 189 57.1
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 4.4e-39 166.0 297 46.8
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.3e-38 164.5 297 46.8
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.7e-38 162.9 167 64.1
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 1.6e-36 157.5 101 75.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 1.0e-35 154.8 111 70.3
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 4.2e-34 149.4 227 47.6
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 3.1e-29 133.3 87 71.3
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 4.5e-28 129.4 173 47.4
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 5.9e-28 129.0 217 43.3
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 1.0e-24 118.2 151 54.3
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 7.0e-21 105.5 61 82.0
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 1.2e-20 104.8 58 81.0
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 5.9e-20 102.4 80 63.8
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 8.6e-19 98.6 59 78.0
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 4.4e-15 86.3 116 61.2
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 4.9e-14 82.8 111 60.4
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 6.0e-12 75.9 125 48.0
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 3.0e-11 73.6 94 62.8
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 2.1e-09 67.4 52 71.2
BolC1t04500H Brassica oleracea HOM05D004662 ORTHO05D005771 1.1e-08 65.1 43 79.1
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 4.9e-06 56.2 146 41.1


User provided reference genes

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