Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p46030 Brassica napus HOM05D000104 ORTHO05D006311 6.0e-109 397.5 198 100.0
BcaC05g28523 Brassica carinata HOM05D000104 ORTHO05D006311 6.6e-100 367.5 196 94.4
BolC5t33330H Brassica oleracea HOM05D000104 ORTHO05D006311 6.6e-100 367.5 196 94.4
A05p30430 Brassica napus HOM05D000104 ORTHO05D006311 4.7e-98 361.3 196 92.9
BraA05t21881Z Brassica rapa HOM05D000104 ORTHO05D006311 3.4e-96 355.1 198 91.9
BcaB06g25977 Brassica carinata HOM05D000104 ORTHO05D006311 1.3e-87 326.6 186 90.3
Thhalv10020013m.g Eutrema salsugineum HOM05D000104 ORTHO05D006311 1.0e-84 317.0 185 86.5
AT3G19210 Arabidopsis thaliana HOM05D000104 ORTHO05D006311 3.9e-84 315.1 184 87.0
Sp3g17280 Schrenkiella parvula HOM05D000104 ORTHO05D006311 1.5e-83 313.2 198 81.3
AL3G32590 Arabidopsis lyrata HOM05D000104 ORTHO05D006311 8.1e-82 307.4 184 83.7
CARHR094620 Cardamine hirsuta HOM05D000104 ORTHO05D006311 4.0e-81 305.1 186 85.5
Carub.0003s1904 Capsella rubella HOM05D000104 ORTHO05D006311 1.0e-76 290.4 184 82.1
Aa31LG8G6000 Aethionema arabicum HOM05D000104 ORTHO05D006311 6.4e-71 271.2 199 71.4
THA.LOC104809900 Tarenaya hassleriana HOM05D000104 ORTHO05D006311 9.6e-59 230.7 181 67.4
Rhsim05G0083600 Rhododendron simsii HOM05D000104 ORTHO05D006311 3.1e-57 225.7 182 62.6
QL11p036019 Quercus lobata HOM05D000104 ORTHO05D006311 2.6e-56 222.6 179 68.7
MD05G1079700 Malus domestica HOM05D000104 ORTHO05D006311 3.2e-54 215.7 179 62.6
Thecc.02G099700 Theobroma cacao HOM05D000104 ORTHO05D006311 2.1e-53 213.0 172 64.0
CSS0031251 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006311 3.5e-53 212.2 190 60.0
CSS0034041 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006311 4.6e-53 211.8 190 59.5
CiPaw.05G006100 Carya illinoinensis HOM05D000104 ORTHO05D006311 6.1e-53 211.5 179 64.2
Prupe.8G123600 Prunus persica HOM05D000104 ORTHO05D006311 7.9e-53 211.1 179 61.5
Actinidia27954 Actinidia chinensis HOM05D000104 ORTHO05D006311 2.3e-52 209.5 187 59.9
Manes.07G082400 Manihot esculenta HOM05D000104 ORTHO05D006311 2.3e-52 209.5 170 65.3
Sed0008150 Sechium edule HOM05D000104 ORTHO05D006311 2.3e-52 209.5 187 59.9
CsaV3_3G018560 Cucumis sativus L. HOM05D000104 ORTHO05D006311 5.1e-52 208.4 193 60.6
Gohir.A13G039700 Gossypium hirsutum HOM05D000104 ORTHO05D006311 5.1e-52 208.4 172 63.4
Ciclev10027772m.g Citrus clementina HOM05D000104 ORTHO05D006311 8.7e-52 207.6 191 61.3
Duzib052G0677 Durio zibethinus HOM05D000104 ORTHO05D006311 1.5e-51 206.8 172 62.8
GSVIVG01031756001 Vitis vinifera HOM05D000104 ORTHO05D006311 1.9e-51 206.5 197 59.4
Phvul.002G054300 Phaseolus vulgaris HOM05D000104 ORTHO05D006311 4.3e-51 205.3 173 63.0
Gorai.013G043100 Gossypium raimondii HOM05D000104 ORTHO05D006311 5.7e-51 204.9 172 62.8
Dinv23617 Davidia involucrata HOM05D000104 ORTHO05D006311 9.7e-51 204.1 173 62.4
Gohir.D13G038400 Gossypium hirsutum HOM05D000104 ORTHO05D006311 9.7e-51 204.1 170 61.8
arahy.Tifrunner.gnm1.ann1.1287G1 Arachis hypogaea HOM05D000104 ORTHO05D006311 1.6e-50 203.4 168 63.1
COL.COLO4_32665 Corchorus olitorius HOM05D000104 ORTHO05D006311 2.8e-50 202.6 193 58.5
ECA234G1929 Erigeron canadensis HOM05D000104 ORTHO05D006311 4.8e-50 201.8 159 66.0
MELO3C019510.2 Cucumis melo HOM05D000104 ORTHO05D006311 8.2e-50 201.1 209 56.9
Lj5A209G69 Lonicera japonica HOM05D000104 ORTHO05D006311 1.1e-49 200.7 207 56.0
Sabra04G0093400 Salix brachista HOM05D000104 ORTHO05D006311 1.8e-49 199.9 193 57.0
Glyma.01G244700 Glycine max HOM05D000104 ORTHO05D006311 2.4e-49 199.5 158 65.2
Potri.004G141500 Populus trichocarpa HOM05D000104 ORTHO05D006311 2.4e-49 199.5 193 58.5
MBI06_g36644_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D006311 4.1e-49 198.7 164 65.2
Nitab4.5_0000292g0040 Nicotiana tabacum HOM05D000104 ORTHO05D006311 4.1e-49 198.7 186 58.6
VMungo1215G3211 Vigna mungo HOM05D000104 ORTHO05D006311 4.1e-49 198.7 163 64.4
TPR.G21597 Trifolium pratense HOM05D000104 ORTHO05D006311 6.9e-49 198.0 167 63.5
RcHm_v2.0_Chr6g0256991 Rosa chinensis HOM05D000104 ORTHO05D006311 1.2e-48 197.2 179 59.2
TWI31G1026 Tripterygium wilfordii HOM05D000104 ORTHO05D006311 3.4e-48 195.7 168 60.7
Ca_24337_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006311 5.9e-48 194.9 167 63.5
PSO170G2386 Papaver somniferum HOM05D000104 ORTHO05D006311 5.9e-48 194.9 171 63.2
Lalb_Chr05g0210731 Lupinus albus HOM05D000104 ORTHO05D006311 7.7e-48 194.5 198 56.6
Nitab4.5_0004804g0040 Nicotiana tabacum HOM05D000104 ORTHO05D006311 1.0e-47 194.1 193 56.0
Solyc04g056410.3 Solanum lycopersicum HOM05D000104 ORTHO05D006311 1.0e-47 194.1 186 59.1
PSO210G6827 Papaver somniferum HOM05D000104 ORTHO05D006311 1.3e-47 193.7 171 63.2
Cc02_g18720 Coffea canephora HOM05D000104 ORTHO05D006311 3.8e-47 192.2 153 64.1
Nn5g30246 Nelumbo nucifera HOM05D000104 ORTHO05D006311 3.8e-47 192.2 159 64.2
Eucgr.G01447 Eucalyptus grandis HOM05D000104 ORTHO05D006311 5.0e-47 191.8 181 58.6
Oeu013703.1 Olea europaea HOM05D000104 ORTHO05D006311 6.5e-47 191.4 163 60.7
Aqoxy5G01249 Aquilegia oxysepala HOM05D000104 ORTHO05D006311 1.1e-46 190.7 195 55.4
HanXRQChr16g0497611 Helianthus annuus HOM05D000104 ORTHO05D006311 1.1e-46 190.7 197 53.8
Cfa004510 Carpinus fangiana HOM05D000104 ORTHO05D006311 1.4e-46 190.3 181 61.3
vmacro19498 Vaccinium macrocarpon HOM05D000104 ORTHO05D006311 3.2e-46 189.1 196 56.1
SalBow6G5855 Salvia bowleyana HOM05D000104 ORTHO05D006311 7.2e-46 188.0 163 61.3
Lj1g0013867 Lotus japonicus HOM05D000104 ORTHO05D006311 1.6e-45 186.8 170 60.6
FvH4_2g06200 Fragaria vesca HOM05D000104 ORTHO05D006311 2.1e-45 186.4 160 61.9
FAN24G2290 Fragaria x ananassa HOM05D000104 ORTHO05D006311 2.1e-45 186.4 160 61.9
FAN15G0367 Fragaria x ananassa HOM05D000104 ORTHO05D006311 3.6e-45 185.7 179 57.5
Psat4g228280 Pisum sativum HOM05D000104 ORTHO05D006311 3.6e-45 185.7 168 61.9
Sopen04g025310 Solanum pennellii HOM05D000104 ORTHO05D006311 3.6e-45 185.7 186 57.5
Medtr5g004720 Medicago truncatula HOM05D000104 ORTHO05D006311 4.6e-45 185.3 167 61.1
Sc18g0004040 Simmondsia chinensis HOM05D000104 ORTHO05D006311 4.6e-45 185.3 171 58.5
SGA_v2.0_scaffold90G27664 Striga asiatica HOM05D000104 ORTHO05D006311 4.6e-45 185.3 168 57.7
Peaxi162Scf00152g00027 Petunia axillaris HOM05D000104 ORTHO05D006311 7.9e-45 184.5 200 55.0
Migut.B00341 Erythranthe guttata HOM05D000104 ORTHO05D006311 1.0e-44 184.1 169 59.2
MSTRG.20152 Avicennia marina HOM05D000104 ORTHO05D006311 2.3e-44 183.0 181 55.8
CAN.G46.36 Capsicum annuum HOM05D000104 ORTHO05D006311 2.3e-44 183.0 197 54.3
PGR042G0253 Punica granatum HOM05D000104 ORTHO05D006311 1.5e-43 180.3 187 54.0
QL09p040364 Quercus lobata HOM05D000370 ORTHO05D001335 1.5e-43 180.3 141 68.1
CDE08G1277 Ceratophyllum demersum HOM05D000104 ORTHO05D006311 7.4e-43 177.9 157 58.0
DCAR_029033 Daucus carota HOM05D000590 ORTHO05D006311 1.3e-42 177.2 201 53.7
EL10Ac9g21836 Beta vulgaris HOM05D000104 ORTHO05D006311 3.7e-42 175.6 172 54.1
ClCG05G010010 Citrullus lanatus HOM05D000104 ORTHO05D006311 3.7e-42 175.6 169 58.6
HPP92_016725 Vanilla planifolia HOM05D000104 ORTHO05D006311 8.2e-42 174.5 185 53.5
SHI30983 Sapria himalayana HOM05D000104 ORTHO05D006311 1.1e-41 174.1 199 51.8
ATR0100G059 Amborella trichopoda HOM05D000104 ORTHO05D006311 1.8e-41 173.3 198 51.0
unitig_0.g82 Utricularia gibba HOM05D004246 ORTHO05D006311 5.3e-41 171.8 158 58.9
Hund00332 Selenicereus undatus HOM05D000104 ORTHO05D006311 1.0e-39 167.5 195 51.8
Os02g0762800 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006311 1.9e-38 163.3 157 53.5
Haze_10067 Corylus avellana HOM05D000104 ORTHO05D006311 1.6e-37 160.2 270 40.7
AagrBONN_evm.TU.Sc2ySwM_228.1653 Anthoceros agrestis HOM05D000104 ORTHO05D006311 1.1e-35 154.1 157 48.4
Pp3c16_6690 Physcomitrium patens HOM05D000104 ORTHO05D006311 1.3e-34 150.6 156 51.9
AUR62011445 Chenopodium quinoa HOM05D000104 ORTHO05D006311 1.8e-33 146.7 173 51.4
Pp3c5_12730 Physcomitrium patens HOM05D000104 ORTHO05D006311 4.1e-33 145.6 155 50.3
Hund06178 Selenicereus undatus HOM05D000104 ORTHO05D006311 5.5e-30 135.2 123 61.0
DCAR_029051 Daucus carota HOM05D000104 ORTHO05D006311 7.2e-30 134.8 154 50.6
TAR628G1742 Trochodendron aralioides HOM05D000104 ORTHO05D006311 4.0e-28 129.0 87 71.3
Lsat_1_v5_gn_5_112800 Lactuca sativa HOM05D000104 ORTHO05D006311 2.0e-27 126.7 162 46.3
SMO137G0183 Selaginella moellendorffii HOM05D000104 ORTHO05D006311 5.7e-27 125.2 153 47.7
CBR_g70715 Chara braunii HOM05D000104 ORTHO05D006311 1.3e-26 124.0 183 39.9
Atru.chr5.2727 Acer truncatum HOM05D000104 ORTHO05D006311 1.4e-25 120.6 99 64.6
SEGI_21756 Sequoiadendron giganteum HOM05D000104 ORTHO05D006311 3.5e-24 115.9 114 53.5
AUR62016616 Chenopodium quinoa HOM05D000104 ORTHO05D006311 1.1e-22 110.9 134 48.5
SHI05368 Sapria himalayana HOM05D000104 ORTHO05D006311 1.1e-22 110.9 135 48.1
CDE06G0834 Ceratophyllum demersum HOM05D000104 ORTHO05D006311 4.7e-21 105.5 125 47.2
TAR628G0736 Trochodendron aralioides HOM05D000104 ORTHO05D006311 1.6e-13 80.5 54 74.1
PRCOL_00002118 Prasinoderma coloniale HOM05D000104 ORTHO05D006311 5.4e-09 65.5 57 47.4
Cpa.g.sc62.19 Carica papaya HOM05D000104 ORTHO05D006311 2.0e-08 63.5 85 51.8
MCO14G348 Micromonas commoda HOM05D000104 ORTHO05D006311 2.0e-08 63.5 155 29.7


User provided reference genes

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