Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p28810 Brassica napus HOM05D012303 ORTHO05D014119 1.1e-62 243.0 116 100.0
C03p79310 Brassica napus HOM05D012303 ORTHO05D014119 1.3e-58 229.6 117 94.9
BolC3t20174H Brassica oleracea HOM05D012303 ORTHO05D014119 8.2e-58 226.9 116 94.0
BolC8t50674H Brassica oleracea HOM05D012303 ORTHO05D014119 4.0e-57 224.6 117 94.0
BolC4t26913H Brassica oleracea HOM05D012303 ORTHO05D014119 1.5e-56 222.6 117 92.3
C04p53580 Brassica napus HOM05D012303 ORTHO05D014119 2.9e-55 218.4 117 90.6
A09p37760 Brassica napus HOM05D012303 ORTHO05D014119 4.9e-55 217.6 117 90.6
A09p37750 Brassica napus HOM05D012303 ORTHO05D014119 1.6e-53 212.6 117 88.9
BcaC01g00400 Brassica carinata HOM05D012303 ORTHO05D014119 3.5e-53 211.5 124 83.1
BolC5t31598H Brassica oleracea HOM05D012303 ORTHO05D014119 1.1e-51 206.5 98 100.0
BcaC02g08510 Brassica carinata HOM05D012303 ORTHO05D014119 2.5e-51 205.3 124 80.6
BcaC05g27014 Brassica carinata HOM05D012303 ORTHO05D014119 3.2e-46 188.3 88 100.0
BraA09t40423Z Brassica rapa HOM05D012303 ORTHO05D014119 6.3e-42 174.1 95 90.5
C09p30450 Brassica napus HOM05D012303 ORTHO05D014119 1.6e-37 159.5 90 85.6
BolC9t59952H Brassica oleracea HOM05D003015 ORTHO05D003733 2.8e-34 148.7 93 77.4
BraA10t45186Z Brassica rapa HOM05D003015 ORTHO05D003733 4.4e-19 98.2 65 73.8
C09p72070 Brassica napus HOM05D003015 ORTHO05D003733 9.7e-19 97.1 67 70.1
BcaC06g32186 Brassica carinata HOM05D003015 ORTHO05D003733 4.8e-18 94.7 84 63.1
AL1G17510 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 6.3e-18 94.4 84 63.1
A10p31400 Brassica napus HOM05D003015 ORTHO05D003733 2.4e-17 92.4 65 70.8
CARHR204790 Cardamine hirsuta HOM05D003015 ORTHO05D003733 4.5e-16 88.2 92 55.4
AT2G29580 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 1.7e-15 86.3 114 50.0
Sp4g12310 Schrenkiella parvula HOM05D003015 ORTHO05D003733 1.5e-14 83.2 114 46.5
AL4G24300 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 8.0e-13 77.4 112 48.2
AL6G17220 Arabidopsis lyrata HOM05D003015 ORTHO05D003733 9.8e-11 70.5 121 42.1
FvH4_4g36530 Fragaria vesca HOM05D003015 ORTHO05D003733 2.2e-10 69.3 97 43.3
BolC4t27389H Brassica oleracea HOM05D003015 ORTHO05D003733 2.8e-10 68.9 103 39.8
AT1G07360 Arabidopsis thaliana HOM05D003015 ORTHO05D003733 3.7e-10 68.6 83 51.8
Thhalv10016591m.g Eutrema salsugineum HOM05D003015 ORTHO05D003733 3.7e-10 68.6 113 41.6
FAN12G3049 Fragaria x ananassa HOM05D003015 ORTHO05D003733 6.3e-10 67.8 97 42.3
CARHR007070 Cardamine hirsuta HOM05D003015 ORTHO05D003733 8.3e-10 67.4 83 51.8
FAN22G2074 Fragaria x ananassa HOM05D003015 ORTHO05D003733 8.3e-10 67.4 97 41.2
BcaB02g10264 Brassica carinata HOM05D003015 ORTHO05D039340 1.8e-09 66.2 104 40.4
THA.LOC104826299 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 1.8e-09 66.2 110 42.7
Carub.0001s0666 Capsella rubella HOM05D003015 ORTHO05D003733 3.1e-09 65.5 85 52.9
RcHm_v2.0_Chr4g0408701 Rosa chinensis HOM05D003015 ORTHO05D003733 4.1e-09 65.1 97 42.3
THA.LOC104800716 Tarenaya hassleriana HOM05D003015 ORTHO05D003733 4.1e-09 65.1 95 43.2
CDE02G0190 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 5.4e-09 64.7 100 43.0
Phvul.L002537 Phaseolus vulgaris HOM05D003015 ORTHO05D003733 5.4e-09 64.7 105 44.8
AUR62037628 Chenopodium quinoa HOM05D003015 ORTHO05D003733 7.0e-09 64.3 102 42.2
BcaC02g08076 Brassica carinata HOM05D003015 ORTHO05D003733 9.1e-09 63.9 96 39.6
C04p58700 Brassica napus HOM05D003015 ORTHO05D003733 9.1e-09 63.9 96 39.6
Prupe.2G214800 Prunus persica HOM05D003015 ORTHO05D003733 9.1e-09 63.9 94 41.5
Prupe.8G143100 Prunus persica HOM05D003015 ORTHO05D003733 9.1e-09 63.9 94 41.5
AUR62041065 Chenopodium quinoa HOM05D003015 ORTHO05D003733 2.7e-08 62.4 102 44.1
VMungo0540G1143 Vigna mungo HOM05D003015 ORTHO05D003733 2.7e-08 62.4 94 44.7
Ah.04g164350 Amaranthus hybridus HOM05D003015 ORTHO05D003733 3.5e-08 62.0 101 42.6
Lalb_Chr02g0153531 Lupinus albus HOM05D003015 ORTHO05D003733 3.5e-08 62.0 105 44.8
Cfa011635 Carpinus fangiana HOM05D003015 ORTHO05D003733 4.5e-08 61.6 91 44.0
Haze_24240 Corylus avellana HOM05D003015 ORTHO05D003733 4.5e-08 61.6 91 44.0
FAN17G3087 Fragaria x ananassa HOM05D003015 ORTHO05D003733 4.5e-08 61.6 97 40.2
HanXRQChr11g0338781 Helianthus annuus HOM05D003015 ORTHO05D003733 4.5e-08 61.6 95 36.8
EL10Ac4g08321 Beta vulgaris HOM05D003015 ORTHO05D003733 5.9e-08 61.2 103 41.7
C08p02980 Brassica napus HOM05D003015 ORTHO05D003733 5.9e-08 61.2 83 44.6
CiPaw.05G153000 Carya illinoinensis HOM05D003015 ORTHO05D003733 5.9e-08 61.2 123 36.6
MSTRG.5211 Avicennia marina HOM05D003015 ORTHO05D003733 7.7e-08 60.8 101 40.6
CSS0018492 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 1.0e-07 60.5 101 40.6
CSS0039767 Camellia sinensis var. sinensis HOM05D003015 ORTHO05D003733 1.0e-07 60.5 101 40.6
BcaB03g13399 Brassica carinata HOM05D003015 ORTHO05D003733 1.3e-07 60.1 83 44.6
A08p35690 Brassica napus HOM05D002022 ORTHO05D002056 1.3e-07 60.1 83 44.6
BolC8t47098H Brassica oleracea HOM05D003015 ORTHO05D003733 1.3e-07 60.1 83 44.6
BraA08t35476Z Brassica rapa HOM05D003015 ORTHO05D003733 1.3e-07 60.1 83 44.6
Lsat_1_v5_gn_7_76100 Lactuca sativa HOM05D003015 ORTHO05D003733 1.3e-07 60.1 102 37.3
MD07G1175800 Malus domestica HOM05D003015 ORTHO05D003733 1.3e-07 60.1 88 40.9
Potri.009G041400 Populus trichocarpa HOM05D003015 ORTHO05D003733 1.3e-07 60.1 101 39.6
Potri.009G041600 Populus trichocarpa HOM05D003015 ORTHO05D003733 1.3e-07 60.1 101 39.6
Solyc10g079190.3 Solanum lycopersicum HOM05D003015 ORTHO05D003733 1.3e-07 60.1 101 40.6
Sopen10g029840 Solanum pennellii HOM05D003015 ORTHO05D003733 1.3e-07 60.1 101 40.6
PGSC0003DMG400008145 Solanum tuberosum HOM05D003015 ORTHO05D003733 1.3e-07 60.1 101 40.6
Lalb_Chr06g0171271 Lupinus albus HOM05D003015 ORTHO05D003733 1.7e-07 59.7 105 44.8
QL01p027360 Quercus lobata HOM05D003015 ORTHO05D003733 1.7e-07 59.7 94 42.6
SHI06627 Sapria himalayana HOM05D003015 ORTHO05D003733 1.7e-07 59.7 111 37.8
CARHR122920 Cardamine hirsuta HOM05D003015 ORTHO05D014119 2.3e-07 59.3 89 44.9
Eucgr.J01948 Eucalyptus grandis HOM05D003015 ORTHO05D003733 2.3e-07 59.3 100 42.0
Oeu049810.1 Olea europaea HOM05D003015 ORTHO05D003733 2.3e-07 59.3 101 39.6
SHI07211 Sapria himalayana HOM05D003015 ORTHO05D003733 2.3e-07 59.3 111 37.8
TAR636G2105 Trochodendron aralioides HOM05D003015 ORTHO05D003733 2.3e-07 59.3 105 37.1
BraA04t17800Z Brassica rapa HOM05D003015 ORTHO05D003733 2.9e-07 58.9 103 35.0
Duzib147G1171 Durio zibethinus HOM05D003015 ORTHO05D003733 2.9e-07 58.9 120 35.8
Migut.N00829 Erythranthe guttata HOM05D003015 ORTHO05D003733 2.9e-07 58.9 79 45.6
CANSAT35G0599 Cannabis sativa HOM05D003015 ORTHO05D003733 3.8e-07 58.5 115 40.0
Oeu045924.1 Olea europaea HOM05D003015 ORTHO05D003733 5.0e-07 58.2 95 42.1
Sabra09G0029100 Salix brachista HOM05D003015 ORTHO05D003733 5.0e-07 58.2 101 38.6
Sabra09G0029300 Salix brachista HOM05D003015 ORTHO05D003733 5.0e-07 58.2 101 38.6
BcaB06g28319 Brassica carinata HOM05D003015 ORTHO05D003733 6.6e-07 57.8 111 33.3
Gohir.D03G029400 Gossypium hirsutum HOM05D003015 ORTHO05D003733 6.6e-07 57.8 104 37.5
Gorai.003G031000 Gossypium raimondii HOM05D003015 ORTHO05D003733 6.6e-07 57.8 104 37.5
Os06g0170500 Oryza sativa ssp. japonica HOM05D003015 ORTHO05D003733 6.6e-07 57.8 132 34.8
Sc20g0003200 Simmondsia chinensis HOM05D003015 ORTHO05D003733 6.6e-07 57.8 113 39.8
Nitab4.5_0012695g0010 Nicotiana tabacum HOM05D003015 ORTHO05D003733 8.6e-07 57.4 101 39.6
PSO339G6468 Papaver somniferum HOM05D003015 ORTHO05D003733 8.6e-07 57.4 127 34.6
PSO384G4602 Papaver somniferum HOM05D003015 ORTHO05D003733 8.6e-07 57.4 102 37.3
A04p22550 Brassica napus HOM05D003015 ORTHO05D003733 1.1e-06 57.0 103 33.0
Gohir.A02G151000 Gossypium hirsutum HOM05D003015 ORTHO05D003733 1.1e-06 57.0 104 37.5
MD01G1110000 Malus domestica HOM05D003015 ORTHO05D003733 1.1e-06 57.0 88 44.3
Nitab4.5_0000244g0050 Nicotiana tabacum HOM05D003015 ORTHO05D003733 1.1e-06 57.0 101 39.6
Os07g0281000 Oryza sativa ssp. japonica HOM05D003015 ORTHO05D003733 1.1e-06 57.0 103 40.8
Lj2A1075T34 Lonicera japonica HOM05D003015 ORTHO05D003733 1.5e-06 56.6 127 33.9
EL10Ac3g06500 Beta vulgaris HOM05D003015 ORTHO05D003733 1.9e-06 56.2 103 39.8
Lj6g0027942 Lotus japonicus HOM05D003015 ORTHO05D003733 1.9e-06 56.2 105 41.9
TAR402G0004 Trochodendron aralioides HOM05D003015 ORTHO05D003733 1.9e-06 56.2 105 38.1
TWI75G0619 Tripterygium wilfordii HOM05D003015 ORTHO05D003733 2.5e-06 55.8 100 38.0
ATR0584G134 Amborella trichopoda HOM05D003015 ORTHO05D003733 3.3e-06 55.5 103 38.8
ATR0584G244 Amborella trichopoda HOM05D003015 ORTHO05D003733 3.3e-06 55.5 103 38.8
CDE04G0464 Ceratophyllum demersum HOM05D003015 ORTHO05D003733 3.3e-06 55.5 100 41.0
Ciclev10028282m.g Citrus clementina HOM05D003015 ORTHO05D003733 3.3e-06 55.5 111 35.1
Duzib264G0696 Durio zibethinus HOM05D003015 ORTHO05D003733 3.3e-06 55.5 96 37.5
MD16G1006600 Malus domestica HOM05D003015 ORTHO05D003733 3.3e-06 55.5 96 38.5
Sp1g06110 Schrenkiella parvula HOM05D003015 ORTHO05D003733 3.3e-06 55.5 50 56.0
MSTRG.27859 Avicennia marina HOM05D003015 ORTHO05D003733 4.2e-06 55.1 100 41.0
FAN22G0757 Fragaria x ananassa HOM05D003015 ORTHO05D003733 4.2e-06 55.1 97 40.2
Glyma.02G303600 Glycine max HOM05D003015 ORTHO05D003733 4.2e-06 55.1 95 43.2
Hund12125 Selenicereus undatus HOM05D003015 ORTHO05D003733 4.2e-06 55.1 95 41.1
Actinidia38840 Actinidia chinensis HOM05D003015 ORTHO05D003733 5.5e-06 54.7 101 38.6
CsaV3_2G007640 Cucumis sativus L. HOM05D003015 ORTHO05D003733 5.5e-06 54.7 113 38.1
Nn3g19364 Nelumbo nucifera HOM05D003015 ORTHO05D003733 5.5e-06 54.7 102 39.2
Zm00001eb375430 Zea mays HOM05D003015 ORTHO05D003733 5.5e-06 54.7 98 40.8
MELO3C004123.2 Cucumis melo HOM05D003015 ORTHO05D003733 7.2e-06 54.3 113 37.2
Atru.chr3.4062 Acer truncatum HOM05D003015 ORTHO05D003733 9.5e-06 53.9 107 37.4
ClCG02G014360 Citrullus lanatus HOM05D003015 ORTHO05D003733 9.5e-06 53.9 113 37.2
Migut.N00830 Erythranthe guttata HOM05D003015 ORTHO05D003733 9.5e-06 53.9 90 37.8
Lalb_Chr21g0314561 Lupinus albus HOM05D003015 ORTHO05D003733 9.5e-06 53.9 104 42.3
Nitab4.5_0001618g0050 Nicotiana tabacum HOM05D003015 ORTHO05D003733 9.5e-06 53.9 101 38.6
Nitab4.5_0005031g0010 Nicotiana tabacum HOM05D003015 ORTHO05D003733 9.5e-06 53.9 101 38.6


User provided reference genes

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