Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p26600 Brassica napus HOM05D005653 ORTHO05D007013 2.5e-147 525.4 257 100.0
BcaC05g26610 Brassica carinata HOM05D005653 ORTHO05D007013 7.8e-61 238.0 256 53.5
Sp1g24170 Schrenkiella parvula HOM05D005653 ORTHO05D007013 2.4e-54 216.5 275 52.0
BolC3t19717H Brassica oleracea HOM05D005653 ORTHO05D007013 1.2e-53 214.2 275 52.4
AT1G27980 Arabidopsis thaliana HOM05D005653 ORTHO05D007013 1.6e-53 213.8 275 52.0
Carub.0001s2643 Capsella rubella HOM05D005653 ORTHO05D007013 2.1e-53 213.4 275 51.3
AL1G41470 Arabidopsis lyrata HOM05D005653 ORTHO05D007013 2.7e-53 213.0 275 51.6
A08p25960 Brassica napus HOM05D005653 ORTHO05D007013 2.7e-53 213.0 275 51.6
BraA08t34547Z Brassica rapa HOM05D005653 ORTHO05D007013 2.7e-53 213.0 275 51.6
C03p74690 Brassica napus HOM05D005653 ORTHO05D007013 3.9e-52 209.1 275 51.6
Aa31sc146G110 Aethionema arabicum HOM05D005653 ORTHO05D007013 1.8e-49 200.3 275 48.7
Ca_07130_v3 Cicer arietinum L. HOM05D005653 ORTHO05D007013 1.8e-49 200.3 275 47.3
Glyma.18G284300 Glycine max HOM05D005653 ORTHO05D007013 5.3e-49 198.7 277 46.6
Psat3g188000 Pisum sativum HOM05D005653 ORTHO05D007013 6.9e-49 198.4 275 48.0
QL03p051746 Quercus lobata HOM05D005653 ORTHO05D007013 3.4e-48 196.1 292 44.9
Glyma.02G097200 Glycine max HOM05D005653 ORTHO05D007013 4.5e-48 195.7 277 46.2
THA.LOC104820527 Tarenaya hassleriana HOM05D005653 ORTHO05D007013 7.6e-48 194.9 277 46.9
Eucgr.B03521 Eucalyptus grandis HOM05D005653 ORTHO05D007013 3.8e-47 192.6 277 45.5
CARHR027410 Cardamine hirsuta HOM05D005653 ORTHO05D007013 4.9e-47 192.2 311 44.7
Rhsim12G0094700 Rhododendron simsii HOM05D005653 ORTHO05D007013 4.9e-47 192.2 275 45.8
Lj1g0002640 Lotus japonicus HOM05D005653 ORTHO05D007013 1.1e-46 191.0 275 46.5
MD13G1122300 Malus domestica HOM05D005653 ORTHO05D007013 1.1e-46 191.0 277 44.8
Atru.BG.292.p Acer truncatum HOM05D005653 ORTHO05D007013 1.4e-46 190.7 277 45.1
arahy.Tifrunner.gnm1.ann1.8E8WMD Arachis hypogaea HOM05D005653 ORTHO05D007013 1.4e-46 190.7 277 46.6
arahy.Tifrunner.gnm1.ann1.K5AHSV Arachis hypogaea HOM05D005653 ORTHO05D007013 1.4e-46 190.7 277 46.6
CiPaw.05G107200 Carya illinoinensis HOM05D005653 ORTHO05D007013 1.4e-46 190.7 277 44.8
MBI11_g05337_MAGBIO Magnolia biondii HOM05D005653 ORTHO05D007013 1.4e-46 190.7 275 45.8
Manes.12G008600 Manihot esculenta HOM05D005653 ORTHO05D007013 1.4e-46 190.7 277 45.8
Haze_12446 Corylus avellana HOM05D005653 ORTHO05D007013 1.9e-46 190.3 275 45.5
PGR102G3026 Punica granatum HOM05D005653 ORTHO05D007013 1.9e-46 190.3 275 46.2
VMungo1383G3612 Vigna mungo HOM05D005653 ORTHO05D007013 1.9e-46 190.3 275 46.5
Lsat_1_v5_gn_8_147520 Lactuca sativa HOM05D005653 ORTHO05D007013 2.4e-46 189.9 278 46.0
Cfa009387 Carpinus fangiana HOM05D005653 ORTHO05D007013 3.2e-46 189.5 275 45.1
HanXRQChr08g0209781 Helianthus annuus HOM05D005653 ORTHO05D007013 7.1e-46 188.3 278 45.3
Thhalv10009378m.g Eutrema salsugineum HOM05D005653 ORTHO05D007013 9.3e-46 188.0 264 47.7
PSO478G2696 Papaver somniferum HOM05D005653 ORTHO05D007013 1.6e-45 187.2 275 46.2
TWI18G0855 Tripterygium wilfordii HOM05D005653 ORTHO05D007013 1.6e-45 187.2 275 46.2
CsaV3_6G008140 Cucumis sativus L. HOM05D005653 ORTHO05D007013 2.1e-45 186.8 275 46.5
Medtr7g022310 Medicago truncatula HOM05D005653 ORTHO05D007013 2.1e-45 186.8 278 45.0
Phvul.008G017200 Phaseolus vulgaris HOM05D005653 ORTHO05D007013 2.1e-45 186.8 275 45.5
MELO3C022321.2 Cucumis melo HOM05D005653 ORTHO05D007013 3.5e-45 186.0 275 46.5
Lalb_Chr10g0092041 Lupinus albus HOM05D005653 ORTHO05D007013 3.5e-45 186.0 277 45.1
TAR374G1158 Trochodendron aralioides HOM05D005653 ORTHO05D007013 3.5e-45 186.0 278 45.7
ClCG06G002070 Citrullus lanatus HOM05D005653 ORTHO05D007013 4.6e-45 185.7 276 46.0
PSO017G4941 Papaver somniferum HOM05D005653 ORTHO05D007013 7.9e-45 184.9 275 45.8
Thecc.02G202100 Theobroma cacao HOM05D005653 ORTHO05D007013 7.9e-45 184.9 276 46.0
CANSAT01G0083 Cannabis sativa HOM05D005653 ORTHO05D007013 1.0e-44 184.5 277 45.1
RcHm_v2.0_Chr4g0429841 Rosa chinensis HOM05D005653 ORTHO05D007013 1.8e-44 183.7 277 44.0
Actinidia39799 Actinidia chinensis HOM05D005653 ORTHO05D007013 2.3e-44 183.3 275 44.7
Migut.K01002 Erythranthe guttata HOM05D005653 ORTHO05D007013 2.3e-44 183.3 275 46.5
FAN12G1333 Fragaria x ananassa HOM05D005653 ORTHO05D007013 2.3e-44 183.3 275 43.3
GSVIVG01010526001 Vitis vinifera HOM05D005653 ORTHO05D007013 2.3e-44 183.3 275 45.1
FvH4_4g23470 Fragaria vesca HOM05D005653 ORTHO05D007013 3.0e-44 183.0 277 43.3
Lj3A1072T24 Lonicera japonica HOM05D005653 ORTHO05D007013 5.1e-44 182.2 276 46.0
Sopen05g011500 Solanum pennellii HOM05D005653 ORTHO05D007013 5.1e-44 182.2 275 44.4
Sed0008245 Sechium edule HOM05D005653 ORTHO05D007013 6.7e-44 181.8 278 44.6
FAN07G0042 Fragaria x ananassa HOM05D005653 ORTHO05D007013 8.7e-44 181.4 277 43.0
Solyc05g015860.4 Solanum lycopersicum HOM05D005653 ORTHO05D007013 1.1e-43 181.0 275 44.0
CSS0037525 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 1.5e-43 180.6 275 45.1
CSS0048785 Camellia sinensis var. sinensis HOM05D005653 ORTHO05D007013 1.5e-43 180.6 275 45.1
Prupe.1G222900 Prunus persica HOM05D005653 ORTHO05D007013 2.5e-43 179.9 277 42.6
Aqoxy5G03294 Aquilegia oxysepala HOM05D005653 ORTHO05D007013 4.3e-43 179.1 277 44.0
ECA233G0831 Erigeron canadensis HOM05D005653 ORTHO05D007013 5.6e-43 178.7 275 43.6
Potri.003G168800 Populus trichocarpa HOM05D005653 ORTHO05D007013 1.3e-42 177.6 275 44.0
HPP92_006272 Vanilla planifolia HOM05D005653 ORTHO05D007013 1.6e-42 177.2 281 41.3
Ciclev10031168m.g Citrus clementina HOM05D005653 ORTHO05D007013 2.1e-42 176.8 277 43.3
CDE05G3552 Ceratophyllum demersum HOM05D005653 ORTHO05D007013 2.8e-42 176.4 275 44.7
Duzib268G1459 Durio zibethinus HOM05D005653 ORTHO05D007013 6.2e-42 175.3 275 44.4
DCAR_024662 Daucus carota HOM05D005653 ORTHO05D007013 8.2e-42 174.9 278 44.2
SEGI_37890 Sequoiadendron giganteum HOM05D005653 ORTHO05D007013 8.2e-42 174.9 275 43.3
Sabra01G0042500 Salix brachista HOM05D005653 ORTHO05D007013 1.8e-41 173.7 275 44.4
Gohir.A01G153900 Gossypium hirsutum HOM05D005653 ORTHO05D007013 2.4e-41 173.3 278 42.8
Gohir.D01G100300 Gossypium hirsutum HOM05D005653 ORTHO05D007013 3.1e-41 172.9 277 43.7
Gorai.002G181300 Gossypium raimondii HOM05D005653 ORTHO05D007013 5.3e-41 172.2 277 43.3
Zm00001eb334070 Zea mays HOM05D005653 ORTHO05D007013 2.9e-39 166.4 281 41.6
SHI17985 Sapria himalayana HOM05D005653 ORTHO05D007013 6.5e-39 165.2 275 44.0
Atru.chr11.2357 Acer truncatum HOM05D005653 ORTHO05D007013 4.2e-38 162.5 158 57.0
Sabra03G0123700 Salix brachista HOM05D005653 ORTHO05D007013 5.5e-38 162.2 325 37.8
Os01g0100900 Oryza sativa ssp. japonica HOM05D005653 ORTHO05D007013 7.1e-38 161.8 281 41.6
vmacro16096 Vaccinium macrocarpon HOM05D005653 ORTHO05D007013 1.6e-37 160.6 335 36.7
Sc04g0010280 Simmondsia chinensis HOM05D005653 ORTHO05D007013 4.6e-37 159.1 241 44.8
Mapoly0064s0066 Marchantia polymorpha HOM05D005653 ORTHO05D007013 3.0e-36 156.4 278 40.3
Hund06105 Selenicereus undatus HOM05D005653 ORTHO05D007013 5.1e-36 155.6 314 36.6
Pp3c25_6390 Physcomitrium patens HOM05D005653 ORTHO05D007013 1.5e-35 154.1 277 40.8
Peaxi162Scf00128g01533 Petunia axillaris HOM05D005653 ORTHO05D007013 5.7e-35 152.1 265 41.9
TPR.G2913 Trifolium pratense HOM05D005653 ORTHO05D007013 5.7e-35 152.1 151 57.0
Nn4g22260 Nelumbo nucifera HOM05D005653 ORTHO05D007013 2.8e-34 149.8 300 39.0
SMO117G0322 Selaginella moellendorffii HOM05D005653 ORTHO05D007013 3.7e-34 149.4 275 40.0
Cc11_g17180 Coffea canephora HOM05D005653 ORTHO05D007013 2.4e-33 146.7 264 40.5
CAN.G789.4 Capsicum annuum HOM05D005653 ORTHO05D007013 4.1e-33 146.0 151 57.6
Dinv17587 Davidia involucrata HOM05D005653 ORTHO05D007013 6.9e-33 145.2 267 39.3
AUR62028902 Chenopodium quinoa HOM05D005653 ORTHO05D007013 1.7e-31 140.6 258 39.5
SalBow2G0115 Salvia bowleyana HOM05D005653 ORTHO05D007013 3.8e-31 139.4 309 37.2
unitig_26.g10407 Utricularia gibba HOM05D005653 ORTHO05D007013 5.0e-31 139.0 284 36.6
ATR0561G119 Amborella trichopoda HOM05D005653 ORTHO05D007013 1.4e-30 137.5 151 53.6
PGSC0003DMG400019810 Solanum tuberosum HOM05D005653 ORTHO05D007013 7.2e-30 135.2 289 36.7
Nitab4.5_0000340g0070 Nicotiana tabacum HOM05D005653 ORTHO05D007013 2.1e-29 133.7 273 37.0
Ah.03g135980 Amaranthus hybridus HOM05D005653 ORTHO05D007013 2.5e-27 126.7 283 36.0
AUR62005648 Chenopodium quinoa HOM05D005653 ORTHO05D007013 3.3e-27 126.3 329 33.1
COL.COLO4_05008 Corchorus olitorius HOM05D005653 ORTHO05D007013 4.3e-27 125.9 78 76.9
CBR_g49954 Chara braunii HOM05D005653 ORTHO05D007013 1.2e-24 117.9 275 32.7
EL10Ac6g13536 Beta vulgaris HOM05D005653 ORTHO05D007013 1.7e-23 114.0 179 45.8
Actinidia34022 Actinidia chinensis HOM05D005653 ORTHO05D007013 2.3e-20 103.6 75 65.3
SGA_v2.0_scaffold46G17389 Striga asiatica HOM05D005653 ORTHO05D007013 1.1e-19 101.3 168 43.5
PRCOL_00004852 Prasinoderma coloniale HOM05D005653 ORTHO05D007013 2.8e-18 96.7 277 31.4
Cre03.g155051 Chlamydomonas reinhardtii HOM05D005653 ORTHO05D007013 6.3e-18 95.5 193 36.3
MCO01G158 Micromonas commoda HOM05D005653 ORTHO05D007013 1.8e-17 94.0 200 34.5
HanXRQChr08g0209891 Helianthus annuus HOM05D005653 ORTHO05D007013 6.9e-17 92.0 216 37.0
Cfa025335 Carpinus fangiana HOM05D005653 ORTHO05D007013 1.3e-15 87.8 193 34.2
Sc02g0005350 Simmondsia chinensis HOM05D005653 ORTHO05D007013 5.3e-09 65.9 48 68.8
Sc02g0005370 Simmondsia chinensis HOM05D005653 ORTHO05D007013 5.3e-09 65.9 48 68.8
Haze_26914 Corylus avellana HOM05D005653 ORTHO05D007013 4.5e-08 62.8 190 29.5
BraA09t39333Z Brassica rapa HOM05D005653 ORTHO05D007013 8.5e-07 58.5 80 43.8
CARHR035110 Cardamine hirsuta HOM05D005653 ORTHO05D007013 8.5e-07 58.5 54 53.7


User provided reference genes

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