Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p22330 Brassica napus HOM05D003658 ORTHO05D004457 1.9e-89 332.4 162 100.0
Thhalv10006598m.g Eutrema salsugineum HOM05D003658 ORTHO05D004457 1.0e-34 150.6 178 53.4
Sp1g25780 Schrenkiella parvula HOM05D003658 ORTHO05D004457 1.0e-34 150.6 178 53.4
CARHR029540 Cardamine hirsuta HOM05D003658 ORTHO05D004457 1.8e-34 149.8 178 53.4
BcaB07g32573 Brassica carinata HOM05D003658 ORTHO05D004457 2.3e-34 149.4 178 52.8
BcaC05g27003 Brassica carinata HOM05D003658 ORTHO05D004457 2.3e-34 149.4 178 52.8
A09p36600 Brassica napus HOM05D003658 ORTHO05D004457 2.3e-34 149.4 178 52.8
C05p28660 Brassica napus HOM05D003658 ORTHO05D004457 2.3e-34 149.4 178 52.8
BolC5t31587H Brassica oleracea HOM05D003658 ORTHO05D004457 2.3e-34 149.4 178 52.8
BraA09t39180Z Brassica rapa HOM05D003658 ORTHO05D004457 2.3e-34 149.4 178 52.8
Aa31LG4G17270 Aethionema arabicum HOM05D003658 ORTHO05D004457 2.0e-33 146.4 178 51.1
AT1G29900 Arabidopsis thaliana HOM05D003658 ORTHO05D004457 5.7e-33 144.8 178 51.7
AL1G43750 Arabidopsis lyrata HOM05D003658 ORTHO05D004457 3.7e-32 142.1 178 51.1
Carub.0001s2812 Capsella rubella HOM05D003658 ORTHO05D004457 2.0e-30 136.3 178 49.4
THA.LOC104800615 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 3.2e-28 129.0 126 55.6
THA.LOC104826356 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 2.1e-27 126.3 148 52.0
Cpa.g.sc81.16 Carica papaya HOM05D003658 ORTHO05D004457 4.0e-26 122.1 94 66.0
Ciclev10027703m.g Citrus clementina HOM05D003658 ORTHO05D004457 5.2e-26 121.7 94 64.9
Eucgr.F04457 Eucalyptus grandis HOM05D003658 ORTHO05D004457 5.2e-26 121.7 126 50.8
PSO782G2702 Papaver somniferum HOM05D003658 ORTHO05D004457 2.6e-25 119.4 94 66.0
Prupe.6G093800 Prunus persica HOM05D003658 ORTHO05D004457 2.6e-25 119.4 94 66.0
Manes.04G025400 Manihot esculenta HOM05D003658 ORTHO05D004457 3.3e-25 119.0 94 61.7
MD03G1111500 Malus domestica HOM05D003658 ORTHO05D004457 4.4e-25 118.6 94 64.9
Thecc.07G099900 Theobroma cacao HOM05D003658 ORTHO05D004457 4.4e-25 118.6 117 54.7
Gohir.A01G060300 Gossypium hirsutum HOM05D003658 ORTHO05D004457 5.7e-25 118.2 117 54.7
Gohir.D01G046800 Gossypium hirsutum HOM05D003658 ORTHO05D004457 5.7e-25 118.2 117 54.7
CANSAT35G1266 Cannabis sativa HOM05D003658 ORTHO05D004457 7.5e-25 117.9 94 66.0
Gorai.002G066300 Gossypium raimondii HOM05D003658 ORTHO05D004457 7.5e-25 117.9 117 54.7
RcHm_v2.0_Chr2g0124141 Rosa chinensis HOM05D003658 ORTHO05D004457 7.5e-25 117.9 94 64.9
RcHm_v2.0_Chr7g0219181 Rosa chinensis HOM05D003658 ORTHO05D004457 7.5e-25 117.9 94 64.9
TAR623G0185 Trochodendron aralioides HOM05D003658 ORTHO05D004457 9.7e-25 117.5 94 63.8
MD11G1125100 Malus domestica HOM05D003658 ORTHO05D004457 1.3e-24 117.1 94 63.8
GSVIVG01025125001 Vitis vinifera HOM05D003658 ORTHO05D004457 1.3e-24 117.1 117 55.6
COL.COLO4_32786 Corchorus olitorius HOM05D003658 ORTHO05D004457 1.7e-24 116.7 117 53.0
ATR0561G124 Amborella trichopoda HOM05D003658 ORTHO05D004457 2.2e-24 116.3 94 64.9
Nn2g13001 Nelumbo nucifera HOM05D003658 ORTHO05D004457 2.2e-24 116.3 94 63.8
ECA234G0865 Erigeron canadensis HOM05D003658 ORTHO05D004457 3.7e-24 115.5 146 51.4
PGR031G3879 Punica granatum HOM05D003658 ORTHO05D004457 3.7e-24 115.5 117 53.8
CSS0000103 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 4.8e-24 115.2 94 62.8
ClCG09G021680 Citrullus lanatus HOM05D003658 ORTHO05D004457 4.8e-24 115.2 94 61.7
CsaV3_7G021350 Cucumis sativus L. HOM05D003658 ORTHO05D004457 4.8e-24 115.2 94 61.7
Atru.chr3.3712 Acer truncatum HOM05D003658 ORTHO05D004457 1.1e-23 114.0 94 60.6
Sed0019661 Sechium edule HOM05D003658 ORTHO05D004457 1.4e-23 113.6 94 61.7
TAR369G0890 Trochodendron aralioides HOM05D003658 ORTHO05D004457 1.4e-23 113.6 94 61.7
HanXRQChr09g0251621 Helianthus annuus HOM05D003658 ORTHO05D004457 1.8e-23 113.2 146 49.3
Lsat_1_v5_gn_9_7920 Lactuca sativa HOM05D003658 ORTHO05D004457 1.8e-23 113.2 146 45.9
TWI75G0848 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 1.8e-23 113.2 118 51.7
Duzib170G0243 Durio zibethinus HOM05D003658 ORTHO05D004457 2.4e-23 112.8 117 53.8
Duzib213G0488 Durio zibethinus HOM05D003658 ORTHO05D004457 2.4e-23 112.8 117 53.0
Nn2g10669 Nelumbo nucifera HOM05D003658 ORTHO05D004457 2.4e-23 112.8 94 61.7
Nn3g19734 Nelumbo nucifera HOM05D003658 ORTHO05D004457 2.4e-23 112.8 94 61.7
SalBow6G4004 Salvia bowleyana HOM05D003658 ORTHO05D004457 3.1e-23 112.5 126 49.2
Sc12g0008310 Simmondsia chinensis HOM05D003658 ORTHO05D004457 3.1e-23 112.5 126 50.8
CSS0002392 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 4.1e-23 112.1 94 61.7
CSS0048503 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 5.3e-23 111.7 169 44.4
Lj4A607T48 Lonicera japonica HOM05D003658 ORTHO05D004457 5.3e-23 111.7 126 50.8
MELO3C013218.2 Cucumis melo HOM05D003658 ORTHO05D004457 7.0e-23 111.3 94 60.6
DCAR_016522 Daucus carota HOM05D003658 ORTHO05D004457 7.0e-23 111.3 116 54.3
unitig_8.g4304 Utricularia gibba HOM05D003658 ORTHO05D004457 7.0e-23 111.3 118 53.4
arahy.Tifrunner.gnm1.ann1.HT4L1Y Arachis hypogaea HOM05D003658 ORTHO05D004457 9.1e-23 110.9 94 60.6
arahy.Tifrunner.gnm1.ann1.Z66RMF Arachis hypogaea HOM05D003658 ORTHO05D004457 9.1e-23 110.9 94 60.6
Sed0011385 Sechium edule HOM05D003658 ORTHO05D004457 1.2e-22 110.5 94 60.6
CSS0031195 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.6e-22 110.2 169 43.8
Cfa011371 Carpinus fangiana HOM05D003658 ORTHO05D004457 1.6e-22 110.2 94 59.6
AUR62033373 Chenopodium quinoa HOM05D003658 ORTHO05D004457 1.6e-22 110.2 94 59.6
Haze_23933 Corylus avellana HOM05D003658 ORTHO05D004457 1.6e-22 110.2 94 59.6
Dinv32798 Davidia involucrata HOM05D003658 ORTHO05D004457 1.6e-22 110.2 94 63.8
Rhsim01G0220800 Rhododendron simsii HOM05D003658 ORTHO05D004457 1.6e-22 110.2 94 59.6
EL10Ac1g00972 Beta vulgaris HOM05D003658 ORTHO05D004457 2.7e-22 109.4 126 46.8
Actinidia24075 Actinidia chinensis HOM05D003658 ORTHO05D004457 3.5e-22 109.0 94 59.6
DCAR_026092 Daucus carota HOM05D003658 ORTHO05D004457 3.5e-22 109.0 94 60.6
Potri.010G023100 Populus trichocarpa HOM05D003658 ORTHO05D004457 3.5e-22 109.0 94 60.6
Actinidia03749 Actinidia chinensis HOM05D003658 ORTHO05D004457 4.5e-22 108.6 94 58.5
Ah.05g175890 Amaranthus hybridus HOM05D003658 ORTHO05D004457 4.5e-22 108.6 126 48.4
FvH4_1g25660 Fragaria vesca HOM05D003658 ORTHO05D004457 4.5e-22 108.6 94 61.7
FAN26G3193 Fragaria x ananassa HOM05D003658 ORTHO05D004457 4.5e-22 108.6 94 61.7
FAN28G2851 Fragaria x ananassa HOM05D003658 ORTHO05D004457 4.5e-22 108.6 94 61.7
Lalb_Chr24g0394441 Lupinus albus HOM05D003658 ORTHO05D004457 4.5e-22 108.6 94 60.6
Hund30148 Selenicereus undatus HOM05D003658 ORTHO05D004457 4.5e-22 108.6 126 49.2
Hund30149 Selenicereus undatus HOM05D003658 ORTHO05D004457 4.5e-22 108.6 126 49.2
Dinv14501 Davidia involucrata HOM05D003658 ORTHO05D004457 5.9e-22 108.2 94 59.6
Glyma.15G045100 Glycine max HOM05D003658 ORTHO05D004457 5.9e-22 108.2 94 61.7
MBI17_g19523_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 5.9e-22 108.2 126 49.2
CDE08G0949 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 1.0e-21 107.5 117 52.1
AUR62004284 Chenopodium quinoa HOM05D003658 ORTHO05D004457 1.0e-21 107.5 94 58.5
Lalb_Chr22g0350161 Lupinus albus HOM05D003658 ORTHO05D004457 1.0e-21 107.5 94 59.6
QL01p036935 Quercus lobata HOM05D003658 ORTHO05D004457 1.0e-21 107.5 94 61.7
Aqoxy7G00983 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 1.3e-21 107.1 117 50.4
arahy.Tifrunner.gnm1.ann1.1XIG7Z Arachis hypogaea HOM05D003658 ORTHO05D004457 1.3e-21 107.1 94 59.6
CDE02G3705 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 1.3e-21 107.1 94 59.6
Sabra10G0015500 Salix brachista HOM05D003658 ORTHO05D004457 1.3e-21 107.1 94 59.6
TWI31G0613 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 1.3e-21 107.1 94 57.4
vmacro14471 Vaccinium macrocarpon HOM05D003658 ORTHO05D004457 1.7e-21 106.7 121 49.6
CiPaw.13G106400 Carya illinoinensis HOM05D003658 ORTHO05D004457 2.2e-21 106.3 126 47.6
Cc10_g16400 Coffea canephora HOM05D003658 ORTHO05D004457 2.9e-21 105.9 117 52.1
SHI06033 Sapria himalayana HOM05D003658 ORTHO05D004457 2.9e-21 105.9 94 58.5
Glyma.13G328600 Glycine max HOM05D003658 ORTHO05D004457 3.8e-21 105.5 94 60.6
VMungo1080G1458 Vigna mungo HOM05D003658 ORTHO05D004457 3.8e-21 105.5 94 59.6
Phvul.005G137400 Phaseolus vulgaris HOM05D003658 ORTHO05D004457 5.0e-21 105.1 94 59.6
HanXRQChr15g0493841 Helianthus annuus HOM05D003658 ORTHO05D004457 6.5e-21 104.8 124 47.6
PGSC0003DMG400007504 Solanum tuberosum HOM05D003658 ORTHO05D004457 6.5e-21 104.8 117 50.4
Lalb_Chr14g0374811 Lupinus albus HOM05D003658 ORTHO05D004457 1.1e-20 104.0 94 58.5
arahy.Tifrunner.gnm1.ann1.F0P9EH Arachis hypogaea HOM05D003658 ORTHO05D004457 1.5e-20 103.6 94 58.5
MSTRG.24196 Avicennia marina HOM05D003658 ORTHO05D004457 1.5e-20 103.6 94 59.6
arahy.Tifrunner.gnm1.ann1.SY27G3 Arachis hypogaea HOM05D003658 ORTHO05D004457 1.9e-20 103.2 94 58.5
CAN.G1001.11 Capsicum annuum HOM05D003658 ORTHO05D004457 2.5e-20 102.8 117 49.6
Nitab4.5_0010336g0040 Nicotiana tabacum HOM05D003658 ORTHO05D004457 2.5e-20 102.8 117 49.6
Oeu046772.1 Olea europaea HOM05D003658 ORTHO05D004457 2.5e-20 102.8 126 48.4
MSTRG.22380 Avicennia marina HOM05D003658 ORTHO05D004457 4.2e-20 102.1 94 57.4
Ca_01436_v3 Cicer arietinum L. HOM05D003658 ORTHO05D004457 4.2e-20 102.1 94 58.5
Medtr2g093280 Medicago truncatula HOM05D003658 ORTHO05D004457 4.2e-20 102.1 94 58.5
Zm00001eb356970 Zea mays HOM05D003658 ORTHO05D004457 4.2e-20 102.1 94 56.4
Lj3g0017853 Lotus japonicus HOM05D003658 ORTHO05D004457 5.5e-20 101.7 94 57.4
Os01g0570700 Oryza sativa ssp. japonica HOM05D003658 ORTHO05D004457 5.5e-20 101.7 94 57.4
Zm00001eb160030 Zea mays HOM05D003658 ORTHO05D004457 7.2e-20 101.3 94 56.4
Solyc06g075340.4 Solanum lycopersicum HOM05D003658 ORTHO05D004457 9.4e-20 100.9 94 55.3
Sopen06g031760 Solanum pennellii HOM05D003658 ORTHO05D004457 9.4e-20 100.9 94 55.3
Migut.N03234 Erythranthe guttata HOM05D003658 ORTHO05D004457 1.2e-19 100.5 117 48.7
Nitab4.5_0000106g0020 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.2e-19 100.5 117 48.7
Nitab4.5_0010960g0010 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.2e-19 100.5 117 48.7
Peaxi162Scf00072g00510 Petunia axillaris HOM05D003658 ORTHO05D004457 1.2e-19 100.5 117 50.4
TPR.G11612 Trifolium pratense HOM05D003658 ORTHO05D004457 2.7e-19 99.4 94 59.6
HPP92_005503 Vanilla planifolia HOM05D003658 ORTHO05D004457 4.7e-19 98.6 101 54.5
BcaC03g16660 Brassica carinata HOM05D003658 ORTHO05D004457 8.0e-19 97.8 114 51.8
Psat5g277200 Pisum sativum HOM05D003658 ORTHO05D004457 1.0e-18 97.4 94 57.4
SGA_v2.0_scaffold19G08651 Striga asiatica HOM05D003658 ORTHO05D004457 1.4e-18 97.1 94 57.4
Sc12g0005790 Simmondsia chinensis HOM05D003658 ORTHO05D004457 4.0e-18 95.5 87 60.9
CBR_g16075 Chara braunii HOM05D003658 ORTHO05D004457 8.8e-18 94.4 95 52.6
Potri.008G216501 Populus trichocarpa HOM05D003658 ORTHO05D004457 8.8e-18 94.4 137 45.3
AagrBONN_evm.TU.Sc2ySwM_228.578 Anthoceros agrestis HOM05D003658 ORTHO05D004457 1.2e-17 94.0 94 55.3
Pp3c2_19430 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.5e-17 93.6 94 55.3
Oeu047812.2 Olea europaea HOM05D003658 ORTHO05D004457 2.6e-17 92.8 94 55.3
SMO116G0226 Selaginella moellendorffii HOM05D003658 ORTHO05D004457 2.6e-17 92.8 94 54.3
Mapoly0126s0034 Marchantia polymorpha HOM05D003658 ORTHO05D004457 3.4e-17 92.4 131 44.3
Glyma.20G148741 Glycine max HOM05D003658 ORTHO05D004457 7.5e-17 91.3 78 60.3
Pp3c1_18250 Physcomitrium patens HOM05D003658 ORTHO05D004457 7.5e-17 91.3 94 51.1
Lj4C607T5 Lonicera japonica HOM05D003658 ORTHO05D004457 1.7e-16 90.1 104 49.0
Cre08.g358580 Chlamydomonas reinhardtii HOM05D003658 ORTHO05D004457 5.9e-14 81.6 94 45.7
arahy.Tifrunner.gnm1.ann1.YNZQ4S Arachis hypogaea HOM05D003658 ORTHO05D004457 2.9e-13 79.3 94 51.1
MCO07G210 Micromonas commoda HOM05D003658 ORTHO05D004457 8.5e-13 77.8 94 43.6
PRCOL_00001523 Prasinoderma coloniale HOM05D003658 ORTHO05D004457 4.2e-12 75.5 94 41.5
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 8.0e-11 71.2 112 38.4
Haze_26812 Corylus avellana HOM05D003658 ORTHO05D004457 6.8e-10 68.2 95 40.0
Nitab4.5_0000816g0110 Nicotiana tabacum HOM05D003658 ORTHO05D004457 4.5e-06 55.5 95 38.9


User provided reference genes

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