Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 8.3e-241 836.6 426 100.0
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 8.3e-241 836.6 426 100.0
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 5.0e-238 827.4 426 99.1
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 4.0e-227 791.2 426 96.0
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 6.8e-227 790.4 426 95.5
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 6.8e-227 790.4 426 95.5
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 3.4e-226 788.1 426 95.3
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 5.7e-226 787.3 426 95.8
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 3.5e-223 778.1 426 93.9
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 6.6e-222 773.9 426 93.4
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.6e-221 770.8 426 93.0
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 2.8e-220 768.5 426 93.0
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 3.6e-220 768.1 426 92.7
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.7e-217 759.2 426 91.3
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 7.3e-213 743.8 426 90.1
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 7.1e-208 727.2 426 86.6
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 7.1e-208 727.2 426 87.6
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 6.0e-207 724.2 428 88.8
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 3.0e-198 695.3 426 83.6
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 7.3e-197 690.6 426 82.9
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 8.1e-196 687.2 426 83.1
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 1.2e-194 683.3 421 82.9
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 7.6e-194 680.6 426 81.2
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 2.2e-193 679.1 426 80.3
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 3.5e-191 671.8 426 80.5
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 1.7e-190 669.5 426 80.8
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 1.7e-190 669.5 426 80.8
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.0e-190 668.7 426 79.1
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 3.9e-190 668.3 426 78.9
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 6.6e-190 667.5 428 80.6
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 8.7e-190 667.2 426 80.0
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 8.7e-190 667.2 426 78.6
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.1e-189 666.8 426 79.1
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-189 666.0 430 82.6
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.9e-189 666.0 426 78.6
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 2.5e-189 665.6 426 79.6
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 2.5e-189 665.6 422 80.3
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 7.3e-189 664.1 426 79.3
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 4.8e-188 661.4 426 79.1
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 4.8e-188 661.4 426 78.9
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 6.2e-188 661.0 425 79.3
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 2.4e-187 659.1 423 79.9
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 2.4e-187 659.1 426 78.2
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 9.9e-186 653.7 425 77.9
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 2.9e-185 652.1 425 78.4
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 4.9e-185 651.4 426 78.9
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 8.4e-185 650.6 421 77.7
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 8.4e-185 650.6 426 78.6
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 1.1e-184 650.2 426 78.2
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 1.4e-184 649.8 426 78.2
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 1.9e-184 649.4 425 78.1
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 4.2e-184 648.3 426 77.2
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 9.3e-184 647.1 423 78.3
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 9.3e-184 647.1 426 77.7
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 1.6e-183 646.4 426 77.2
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 2.1e-183 646.0 457 73.7
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 3.5e-183 645.2 423 77.5
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 3.5e-183 645.2 425 77.4
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.3e-182 643.3 421 78.9
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 1.8e-182 642.9 423 77.8
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 2.3e-182 642.5 423 77.3
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 5.1e-182 641.3 425 76.9
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 3.3e-181 638.6 426 76.3
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 3.3e-181 638.6 425 77.6
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 9.6e-181 637.1 427 77.0
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 2.1e-180 636.0 426 76.5
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 2.8e-180 635.6 426 76.1
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 8.1e-180 634.0 426 76.1
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.1e-179 633.6 425 76.5
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 1.4e-179 633.3 426 76.1
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 5.3e-179 631.3 425 75.8
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 9.0e-179 630.6 425 75.1
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 1.5e-178 629.8 425 77.4
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 2.6e-178 629.0 422 75.6
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 4.5e-178 628.2 425 74.8
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.2e-177 625.9 426 75.1
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 3.8e-177 625.2 428 75.5
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 4.9e-177 624.8 426 75.1
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 7.1e-176 620.9 424 75.0
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.7e-175 619.0 432 74.3
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 4.6e-175 618.2 432 73.8
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 1.8e-174 616.3 427 75.6
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 3.9e-174 615.1 387 81.4
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 3.9e-174 615.1 383 82.2
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 1.1e-173 613.6 442 72.2
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 5.6e-173 611.3 451 71.2
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 3.7e-172 608.6 422 74.9
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 1.7e-169 599.7 427 72.1
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 2.2e-169 599.4 427 72.4
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 5.1e-166 588.2 426 72.3
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 6.7e-166 587.8 425 67.8
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 3.1e-163 578.9 427 70.3
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 5.3e-163 578.2 317 93.7
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 2.9e-161 572.4 422 72.0
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.9e-160 569.7 418 71.5
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 2.5e-157 559.3 426 69.0
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 2.6e-154 549.3 423 70.0
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 3.4e-154 548.9 383 74.7
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 2.3e-150 536.2 422 64.5
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 3.9e-150 535.4 422 64.5
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 2.0e-146 523.1 497 60.4
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 3.4e-146 522.3 335 79.4
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 1.1e-144 517.3 424 66.0
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 7.7e-138 494.6 410 62.2
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 6.5e-137 491.5 325 80.6
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 3.6e-135 485.7 417 57.1
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 4.7e-135 485.3 424 58.5
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.2e-132 476.5 294 82.0
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-131 474.2 294 81.6
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 1.0e-129 467.6 308 76.6
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.3e-121 440.7 296 79.4
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 6.1e-119 431.8 268 81.7
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 2.3e-113 413.3 304 76.3
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.5e-109 400.6 268 73.9
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 7.8e-106 388.3 326 63.5
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 1.9e-104 383.6 297 68.0
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 8.6e-97 358.2 355 51.5
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.7e-89 334.0 238 72.7
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 8.4e-84 315.1 191 81.7
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.3e-80 302.8 199 77.4
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 2.4e-75 287.0 217 70.0
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 2.5e-72 276.9 196 72.4
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.9e-69 265.0 215 66.5
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 9.9e-69 265.0 173 75.7
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 5.8e-61 239.2 409 35.7
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.2e-59 233.4 210 66.7
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.6e-58 229.6 126 88.9
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 1.5e-56 224.6 412 33.0
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.3e-55 221.5 139 80.6
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.8e-55 220.3 161 76.4
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 9.0e-54 215.3 232 51.3
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.4e-53 213.4 163 74.2
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 3.4e-53 213.4 333 34.5
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 8.2e-47 192.2 114 86.0
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 1.3e-44 184.9 133 69.9
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 6.3e-39 166.0 114 73.7
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 8.8e-33 145.6 426 29.6
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.8e-31 140.6 95 73.7
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 4.8e-31 139.8 80 82.5
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.5e-27 128.3 107 58.9
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 2.1e-26 124.4 115 60.9
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 3.0e-25 120.6 127 62.2
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 1.1e-24 118.6 143 54.5
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 4.8e-23 113.2 146 53.4
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 5.5e-19 99.8 99 57.6
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.0e-18 95.9 72 75.0
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.6e-16 90.9 51 84.3
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 9.8e-16 89.0 165 35.8
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 6.3e-15 86.3 75 62.7
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 5.0e-12 76.6 54 75.9
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 2.0e-08 64.7 38 81.6
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 3.7e-07 60.5 66 53.0
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 3.1e-06 57.4 74 47.3


User provided reference genes

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