Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 4.1e-170 601.3 301 100.0
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 5.0e-168 594.3 301 99.0
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 1.1e-167 593.2 301 98.3
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 9.5e-167 590.1 301 97.7
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 6.2e-166 587.4 303 98.0
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 5.8e-164 580.9 301 96.7
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 1.1e-159 566.6 301 94.0
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 9.2e-154 547.0 301 90.0
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 6.0e-153 544.3 302 90.4
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 4.3e-151 538.1 304 89.1
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 9.0e-149 530.4 302 87.4
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 9.9e-148 526.9 302 86.4
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 1.4e-146 523.1 302 87.4
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 2.1e-145 519.2 295 88.5
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 4.6e-145 518.1 298 87.6
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 1.3e-144 516.5 301 85.4
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 1.7e-144 516.2 295 88.1
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 1.7e-144 516.2 302 84.8
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 4.9e-139 498.0 301 83.7
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 7.1e-138 494.2 300 81.7
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 1.5e-132 476.5 301 80.1
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 2.3e-128 462.6 301 75.7
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 5.1e-128 461.5 301 76.4
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 2.1e-126 456.1 301 76.4
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 3.7e-126 455.3 301 75.1
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 2.4e-125 452.6 302 75.2
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 1.0e-123 447.2 303 75.2
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 4.9e-123 444.9 301 73.8
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 5.5e-122 441.4 302 72.5
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 9.3e-122 440.7 301 73.8
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 1.6e-121 439.9 302 72.5
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 6.0e-121 438.0 293 74.4
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 5.1e-120 434.9 302 73.5
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 4.3e-119 431.8 301 71.8
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 7.4e-119 431.0 303 71.6
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 1.6e-118 429.9 301 71.1
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 2.8e-118 429.1 301 72.4
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 3.7e-118 428.7 297 71.4
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 2.4e-117 426.0 316 70.6
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 2.6e-116 422.5 303 70.3
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 4.5e-116 421.8 293 71.7
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 4.5e-116 421.8 303 69.6
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 1.7e-115 419.9 304 70.1
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 6.5e-115 417.9 304 71.1
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 5.5e-114 414.8 304 70.7
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 9.3e-114 414.1 276 73.9
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 2.1e-113 412.9 336 64.0
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 2.1e-113 412.9 303 71.3
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 2.7e-113 412.5 296 68.6
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 4.6e-113 411.8 299 69.2
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 3.0e-112 409.1 306 69.0
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 6.7e-112 407.9 261 78.2
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 8.8e-112 407.5 300 70.7
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 8.8e-112 407.5 313 66.8
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 1.5e-111 406.8 298 69.1
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 1.5e-111 406.8 300 70.0
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 2.5e-111 406.0 305 70.2
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.5e-111 406.0 304 69.1
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 1.3e-110 403.7 304 68.4
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 2.8e-110 402.5 297 68.4
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 6.3e-110 401.4 302 67.2
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 1.4e-109 400.2 298 66.4
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 1.8e-109 399.8 298 66.4
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.4e-109 399.4 319 65.2
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 3.1e-109 399.1 297 67.3
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 4.1e-109 398.7 292 66.8
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 4.1e-109 398.7 297 67.7
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 6.9e-109 397.9 300 67.3
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 2.0e-108 396.4 303 68.6
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.0e-108 396.4 319 64.6
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 2.6e-108 396.0 298 66.1
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 5.9e-108 394.8 291 68.4
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.3e-107 393.7 269 72.1
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 2.2e-107 392.9 322 64.3
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 2.9e-107 392.5 287 68.6
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 6.5e-107 391.3 291 68.0
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.4e-106 390.2 282 70.9
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 2.5e-106 389.4 301 67.4
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 4.7e-105 385.2 293 67.2
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 9.7e-103 377.5 286 68.9
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 2.2e-102 376.3 299 65.9
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 1.0e-99 367.5 291 62.9
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 1.4e-98 363.6 277 64.6
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 2.5e-98 362.8 221 83.7
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 2.7e-97 359.4 328 61.3
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 3.6e-97 359.0 293 62.8
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 2.3e-96 356.3 244 73.8
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 1.1e-93 347.4 298 60.1
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 1.0e-91 340.9 214 76.6
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 2.9e-91 339.3 249 69.1
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 9.4e-90 334.3 247 70.0
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 9.4e-90 334.3 247 70.0
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 8.0e-89 331.3 244 71.3
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 1.0e-88 330.9 253 67.6
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 3.1e-85 319.3 213 73.2
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 4.1e-85 318.9 308 54.2
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 6.5e-83 311.6 246 66.7
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 1.9e-82 310.1 299 52.5
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 9.8e-79 297.7 276 60.1
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 2.3e-75 286.6 218 67.9
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.5e-71 273.9 249 59.0
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 9.2e-69 264.6 217 65.9
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 1.2e-68 264.2 291 53.3
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 2.3e-67 260.0 241 61.0
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 3.8e-67 259.2 437 40.7
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 7.3e-66 255.0 315 45.7
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 1.4e-64 250.8 149 76.5
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 1.2e-60 237.7 253 53.4
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 6.0e-60 235.3 223 59.2
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 1.0e-59 234.6 181 69.6
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 1.6e-57 227.3 184 62.0
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.1e-53 214.5 235 54.9
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 3.2e-53 213.0 210 58.6
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 3.0e-51 206.5 178 62.4
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 4.4e-47 192.6 164 62.8
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 6.4e-46 188.7 125 71.2
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 1.4e-45 187.6 111 73.9
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 5.4e-45 185.7 135 66.7
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 9.9e-39 164.9 95 81.1
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 5.4e-37 159.1 290 36.9
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 1.7e-35 154.1 96 72.9
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 1.4e-32 144.4 86 76.7
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 2.9e-30 136.7 138 58.7
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 2.1e-28 130.6 349 30.4
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 5.1e-27 125.9 158 48.1
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 8.7e-27 125.2 246 33.7
QL09p036498 Quercus lobata HOM05D005614 ORTHO05D006759 1.3e-25 121.3 70 80.0
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 3.6e-25 119.8 160 44.4
PRCOL_00005856 Prasinoderma coloniale HOM05D005614 ORTHO05D006759 7.6e-23 112.1 133 41.4
CAN.G964.16 Capsicum annuum HOM05D005614 ORTHO05D006759 5.6e-18 95.9 108 53.7
Ca_31116_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 2.6e-15 87.0 95 55.8
RhsimUnG0102200 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.3e-11 73.9 91 53.8
TPR.G32 Trifolium pratense HOM05D005614 ORTHO05D006759 5.1e-11 72.8 31 93.5
Rhsim02G0185400 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.3e-09 68.2 88 53.4
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 5.3e-08 62.8 57 54.4


User provided reference genes

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