Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 0.0e+00 1847.8 987 100.0
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 0.0e+00 1847.8 987 100.0
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 0.0e+00 1790.8 987 96.1
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 0.0e+00 1731.5 987 91.5
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 0.0e+00 1731.1 987 91.5
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 0.0e+00 1559.7 1000 85.7
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 0.0e+00 1528.8 1008 80.4
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 0.0e+00 1528.8 1008 80.4
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 0.0e+00 1466.8 1012 77.6
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 0.0e+00 1436.8 1013 75.4
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 0.0e+00 1431.0 1020 75.9
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 0.0e+00 1431.0 1020 75.9
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 0.0e+00 1408.3 1011 74.4
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 0.0e+00 1399.0 1012 74.9
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 0.0e+00 1368.6 1012 74.9
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 0.0e+00 1333.9 1012 73.3
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 0.0e+00 1324.3 1013 72.6
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 0.0e+00 1324.3 1013 72.6
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 0.0e+00 1264.6 1046 67.5
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 0.0e+00 1179.9 1018 64.9
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 0.0e+00 1167.9 1018 65.0
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 0.0e+00 1084.7 955 63.6
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 1.2e-303 1046.6 677 80.1
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 3.6e-279 965.3 1015 55.1
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 4.8e-268 928.3 1020 52.8
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 1.2e-266 923.7 1026 53.6
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 9.1e-259 897.5 1024 51.7
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 2.5e-256 889.4 1032 51.1
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 4.7e-255 885.2 1022 52.4
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 3.4e-253 879.0 1090 50.3
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 3.4e-253 879.0 1031 51.1
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 4.4e-253 878.6 1031 51.0
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 1.4e-251 873.6 1084 50.4
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 4.1e-251 872.1 1031 50.9
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 9.5e-248 860.9 1022 50.8
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 8.9e-246 854.4 1066 49.4
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 5.8e-245 851.7 1019 49.4
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 2.9e-244 849.4 1062 49.2
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 8.3e-244 847.8 1033 50.2
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 2.4e-243 846.3 1057 50.8
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 1.3e-241 840.5 1021 49.2
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.5e-240 837.0 1037 49.6
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 1.9e-240 836.6 1057 48.0
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 1.6e-239 833.6 1041 50.0
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 2.1e-239 833.2 1106 47.9
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 1.1e-238 830.9 1054 49.6
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 1.8e-238 830.1 1037 49.4
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 8.9e-238 827.8 1094 47.3
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 5.8e-237 825.1 1013 49.2
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 9.8e-237 824.3 1074 47.8
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 9.8e-237 824.3 1026 49.4
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 1.3e-236 823.9 1045 47.8
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 2.2e-236 823.2 1032 49.1
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.1e-235 820.8 1061 48.6
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 1.4e-235 820.5 1031 49.0
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 1.9e-235 820.1 1095 47.2
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 7.0e-235 818.1 1031 49.0
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 7.0e-235 818.1 1138 46.7
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 1.6e-234 817.0 1070 48.1
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 3.0e-233 812.8 964 52.3
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 3.9e-233 812.4 1025 48.4
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 1.4e-230 803.9 1098 46.4
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.3e-230 803.1 1015 49.0
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 2.6e-229 799.7 1108 46.5
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 9.9e-229 797.7 1035 49.1
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 1.3e-228 797.3 1026 49.7
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 1.7e-228 797.0 1035 49.1
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 6.4e-228 795.0 1083 47.2
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 7.1e-227 791.6 1030 48.8
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 6.0e-226 788.5 1104 47.0
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.7e-225 786.9 1034 47.7
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 5.6e-224 781.9 1026 49.2
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 4.0e-222 775.8 1040 49.0
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 1.5e-221 773.9 1022 48.5
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 3.8e-220 769.2 1013 49.6
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 1.4e-219 767.3 1065 47.2
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 3.9e-217 759.2 1017 47.8
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 5.1e-217 758.8 1013 49.7
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 8.4e-212 741.5 1032 46.9
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 5.4e-211 738.8 1019 46.8
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 1.2e-210 737.6 778 55.3
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 4.6e-210 735.7 1029 47.5
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 3.3e-208 729.6 1048 46.6
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 1.3e-207 727.6 1009 48.8
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 1.4e-206 724.2 1107 43.5
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 7.6e-205 718.4 921 48.6
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.7e-204 717.2 1070 44.7
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 3.8e-204 716.1 1019 45.3
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 1.4e-203 714.1 1004 46.6
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 5.4e-203 712.2 932 47.2
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.2e-202 711.1 1064 45.1
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 3.7e-199 699.5 1012 45.3
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 5.3e-198 695.7 1018 45.8
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 4.9e-196 689.1 1011 45.2
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 2.5e-195 686.8 1019 45.6
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 2.7e-194 683.3 1019 44.4
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 2.7e-194 683.3 1168 40.5
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 1.1e-192 677.9 887 47.6
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 1.4e-190 671.0 837 50.4
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 1.3e-188 664.5 1121 43.5
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 7.9e-186 655.2 1164 41.4
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 1.8e-185 654.1 977 45.1
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 4.3e-184 649.4 1056 42.5
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 5.7e-184 649.0 978 43.4
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 5.9e-181 639.0 703 53.5
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 2.8e-175 620.2 1048 41.8
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 5.3e-174 615.9 629 55.2
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 7.2e-171 605.5 590 57.5
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 1.6e-162 577.8 873 44.4
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 4.7e-162 576.2 845 43.6
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.1e-158 565.1 517 60.0
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 1.9e-155 554.3 833 43.5
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 2.6e-152 543.9 847 41.8
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 7.0e-150 535.8 833 42.0
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 6.5e-148 529.3 839 43.6
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 6.8e-145 519.2 1069 39.3
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 2.0e-144 517.7 865 41.6
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 3.7e-135 486.9 972 37.3
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 4.0e-129 466.8 419 61.3
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 4.9e-127 459.9 1015 37.0
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 3.5e-125 453.8 355 67.0
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.9e-123 448.0 356 65.7
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 2.6e-120 437.6 944 37.3
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 2.9e-111 407.5 359 59.1
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 4.3e-107 393.7 723 38.7
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 4.3e-107 393.7 320 64.1
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 9.3e-94 349.4 825 36.0
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.6e-82 312.0 509 40.7
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.4e-73 282.3 381 48.6
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 5.1e-68 263.8 254 54.7
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 9.0e-65 253.1 312 46.8
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 9.4e-62 243.0 332 47.3
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 6.7e-60 236.9 572 35.3
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 4.3e-59 234.2 299 44.8
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 4.8e-58 230.7 449 37.2
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 1.7e-50 205.7 341 36.7
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 3.6e-45 188.0 179 55.9
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 6.1e-45 187.2 155 59.4
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 4.0e-44 184.5 154 59.1
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 6.3e-42 177.2 148 65.5
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 6.3e-42 177.2 547 33.8
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 6.3e-42 177.2 547 33.8
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.4e-41 176.0 129 64.3
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 9.1e-41 173.3 341 37.5
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 4.5e-40 171.0 292 37.7
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.3e-39 169.5 264 42.0
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 5.2e-36 157.5 383 35.5
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 9.8e-35 153.3 136 61.8
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.3e-34 152.9 189 48.7
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 1.0e-31 143.3 134 60.4
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 3.0e-28 131.7 266 41.0
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 4.0e-28 131.3 166 48.2
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 3.1e-25 121.7 97 66.0
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 3.5e-24 118.2 75 78.7
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 1.5e-22 112.8 73 75.3
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 1.8e-20 105.9 74 71.6
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 1.2e-19 103.2 74 70.3
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.8e-17 95.9 396 29.5
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 4.1e-17 94.7 65 72.3
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 7.0e-17 94.0 103 56.3
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 4.3e-14 84.7 160 37.5
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 2.8e-13 82.0 67 58.2
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 1.7e-10 72.8 440 26.6
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 2.2e-10 72.4 97 41.2
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 1.1e-09 70.1 84 48.8
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 9.2e-09 67.0 37 78.4
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 1.2e-08 66.6 45 66.7
CARHR134090 Cardamine hirsuta HOM05D000283 ORTHO05D116263 2.7e-08 65.5 50 64.0
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 1.0e-07 63.5 45 62.2
AUR62035526 Chenopodium quinoa HOM05D002494 ORTHO05D002673 1.3e-07 63.2 299 26.8
AagrBONN_evm.TU.Sc2ySwM_362.842 Anthoceros agrestis HOM05D002494 ORTHO05D002673 3.0e-07 62.0 242 27.3
Ciclev10004135m.g Citrus clementina HOM05D002494 ORTHO05D002673 2.5e-06 58.9 322 24.2
PGR004G0605 Punica granatum HOM05D002494 ORTHO05D002673 2.5e-06 58.9 264 25.8
Zm00001eb329290 Zea mays HOM05D002494 ORTHO05D002673 2.5e-06 58.9 279 25.4
Pp3c3_29590 Physcomitrium patens HOM05D002494 ORTHO05D002673 5.6e-06 57.8 249 25.7
AUR62041649 Chenopodium quinoa HOM05D002494 ORTHO05D002673 7.3e-06 57.4 273 27.5
Thecc.04G272000 Theobroma cacao HOM05D002494 ORTHO05D002673 7.3e-06 57.4 279 25.8


User provided reference genes

Program Settings