Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 0.0e+00 1244.6 635 100.0
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 0.0e+00 1240.3 635 99.7
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 0.0e+00 1155.2 593 99.7
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 0.0e+00 1139.0 594 98.3
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 0.0e+00 1138.3 605 97.0
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 0.0e+00 1091.3 602 94.2
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 4.3e-312 1073.9 607 91.9
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 6.2e-301 1036.9 599 90.2
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 8.4e-290 1000.0 593 87.7
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 4.2e-289 997.7 594 87.7
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 2.1e-288 995.3 593 86.0
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 4.3e-286 987.6 594 86.0
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 2.3e-271 938.7 576 84.9
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 1.7e-250 869.4 598 75.6
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 4.3e-225 785.0 604 69.9
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 6.1e-224 781.2 596 68.1
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 2.0e-222 776.2 600 66.8
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.0e-222 776.2 561 70.8
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 2.2e-221 772.7 533 73.0
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 3.7e-221 771.9 577 68.8
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.1e-220 770.4 600 68.3
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 3.5e-219 765.4 556 70.1
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 3.5e-219 765.4 556 70.1
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.5e-219 765.4 618 64.6
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 4.6e-219 765.0 592 68.8
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 6.6e-218 761.1 610 65.9
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 6.6e-218 761.1 581 68.5
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 6.6e-218 761.1 598 68.2
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 8.6e-218 760.8 602 67.8
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 1.5e-217 760.0 597 65.8
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 3.3e-217 758.8 599 66.6
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 4.3e-217 758.4 603 66.2
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 4.3e-217 758.4 607 66.9
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 5.6e-217 758.1 594 68.0
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 1.2e-216 756.9 509 73.7
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 2.8e-216 755.7 545 70.8
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 6.2e-216 754.6 596 65.3
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 6.2e-216 754.6 582 68.2
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 6.2e-216 754.6 596 66.6
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 2.3e-215 752.7 596 66.1
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 4.0e-215 751.9 542 70.3
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 5.2e-215 751.5 542 71.4
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.5e-214 750.0 544 70.4
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 1.5e-214 750.0 507 72.6
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 2.6e-214 749.2 597 65.8
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 5.8e-214 748.0 596 65.6
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 1.3e-213 746.9 602 66.3
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.7e-213 746.5 597 65.8
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 2.9e-213 745.7 622 65.4
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 2.9e-213 745.7 598 67.4
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 6.4e-213 744.6 595 65.7
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 4.1e-212 741.9 572 68.2
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.2e-211 740.3 604 65.4
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.6e-211 740.0 510 71.6
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 2.0e-211 739.6 545 68.6
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.7e-211 739.2 499 74.3
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 2.7e-211 739.2 580 66.0
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 2.7e-211 739.2 564 68.4
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.7e-211 739.2 597 64.7
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 7.8e-211 737.6 581 65.4
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 1.0e-210 737.3 570 67.0
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 2.3e-210 736.1 599 65.8
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 3.0e-210 735.7 500 73.6
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.1e-209 733.8 599 65.9
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 3.3e-209 732.3 603 65.2
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 5.6e-209 731.5 599 64.6
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 5.6e-209 731.5 503 73.0
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 7.3e-209 731.1 598 65.9
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.6e-208 729.9 590 65.3
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 1.6e-208 729.9 619 64.3
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.1e-208 727.6 609 63.9
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 3.1e-207 725.7 595 64.7
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 3.1e-207 725.7 568 66.0
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 8.9e-207 724.2 593 63.9
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 2.6e-206 722.6 570 65.3
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 9.2e-204 714.1 513 68.8
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 9.2e-204 714.1 509 70.5
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.5e-201 706.8 639 60.1
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.5e-201 706.1 622 60.6
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 4.3e-201 705.3 579 65.5
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 1.6e-200 703.4 608 63.5
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 9.9e-198 694.1 671 57.2
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 2.2e-197 693.0 610 63.0
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 7.1e-196 688.0 511 66.7
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 1.2e-195 687.2 548 65.9
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 2.1e-195 686.4 574 64.8
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 6.0e-195 684.9 567 63.3
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 1.5e-193 680.2 607 59.6
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 2.0e-190 669.8 460 73.5
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 1.3e-189 667.2 575 61.0
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 2.9e-189 666.0 506 67.4
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 9.3e-188 661.0 604 60.1
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 2.1e-187 659.8 652 57.7
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.1e-184 647.9 600 57.8
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 1.3e-181 640.6 585 60.7
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 3.2e-180 636.0 459 68.6
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 6.0e-179 631.7 491 62.5
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 7.4e-177 624.8 576 57.8
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 3.8e-173 612.5 560 59.1
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 1.9e-172 610.1 649 54.1
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 6.0e-163 578.6 480 64.0
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 4.3e-161 572.4 439 65.4
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 2.8e-160 569.7 372 75.0
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 4.5e-158 562.4 559 55.1
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.9e-157 559.7 611 52.7
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 6.5e-157 558.5 440 61.4
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 3.2e-132 476.5 526 51.5
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 2.6e-129 466.8 345 68.7
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.2e-128 463.8 443 51.2
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 1.1e-127 461.5 488 50.6
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 4.1e-127 459.5 484 50.4
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 5.9e-126 455.7 450 50.4
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 1.2e-123 448.0 409 64.5
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 1.3e-120 438.0 422 60.0
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 9.1e-119 431.8 441 53.3
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 2.5e-116 423.7 509 49.7
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.1e-111 408.3 459 53.2
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 2.9e-104 383.6 486 44.9
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 6.0e-102 375.9 266 72.2
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.9e-92 344.4 283 60.1
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 6.6e-85 319.3 204 74.0
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 9.0e-74 282.3 173 78.0
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 4.2e-71 273.5 288 51.4
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 2.7e-70 270.8 261 51.3
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.5e-68 264.2 202 62.4
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 7.3e-68 262.7 210 65.7
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.8e-66 258.1 390 39.2
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.9e-64 250.8 276 50.4
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.3e-58 229.9 281 47.7
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 4.5e-57 226.9 178 62.4
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 2.9e-56 224.2 289 43.9
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 9.3e-55 219.2 133 77.4
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 5.1e-45 186.8 126 71.4
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 2.5e-44 184.5 113 77.0
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.4e-42 177.9 177 55.9
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.7e-40 171.8 271 39.9
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.7e-35 155.2 122 64.8
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 2.2e-32 144.8 269 35.3
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.9e-31 141.7 122 58.2
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 3.9e-29 134.0 106 61.3
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.8e-26 125.2 95 67.4
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 5.9e-25 120.2 120 51.7
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 8.5e-24 116.3 267 32.2
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.1e-23 115.9 105 54.3
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.6e-20 104.8 96 55.2
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 7.4e-20 103.2 77 64.9
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 9.7e-20 102.8 112 47.3
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 6.3e-19 100.1 83 55.4
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 5.3e-18 97.1 232 34.9
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 7.0e-18 96.7 56 85.7
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 1.7e-16 92.0 59 76.3
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 3.8e-16 90.9 57 78.9
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 4.7e-14 84.0 69 59.4
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.8e-13 82.0 52 76.9
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 6.8e-13 80.1 69 56.5
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.0e-12 78.6 246 28.9
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 1.8e-10 72.0 109 39.4
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 4.1e-10 70.9 278 25.5
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.1e-07 62.8 40 77.5
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 2.1e-06 58.5 34 79.4


User provided reference genes

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