Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 2.7e-257 891.7 530 100.0
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 2.7e-257 891.7 530 100.0
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 8.1e-238 827.0 468 93.6
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 3.4e-228 795.0 460 91.1
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 2.5e-223 778.9 466 89.5
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 2.9e-203 712.2 449 84.0
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 9.2e-165 584.3 469 70.1
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 4.7e-145 518.8 455 63.5
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.3e-131 474.2 486 56.6
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 9.6e-130 468.0 476 57.6
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 1.1e-128 464.5 466 57.7
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 1.1e-128 464.5 466 57.7
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 5.3e-128 462.2 506 54.9
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 9.0e-128 461.5 480 55.8
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 1.5e-127 460.7 466 57.3
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 1.2e-124 451.1 459 58.6
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 6.0e-124 448.7 466 56.7
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.3e-123 447.6 454 56.6
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 3.0e-123 446.4 461 56.8
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.1e-122 444.5 464 56.5
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 4.5e-119 432.6 465 55.3
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 1.0e-118 431.4 455 55.4
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 2.9e-118 429.9 455 55.6
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 9.3e-117 424.9 458 55.7
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 2.7e-116 423.3 465 54.8
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 6.3e-113 412.1 469 53.1
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 4.5e-111 406.0 398 59.3
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 7.6e-111 405.2 378 57.9
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 9.3e-109 398.3 459 51.2
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 7.9e-108 395.2 454 52.0
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 5.1e-107 392.5 356 60.7
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 2.5e-106 390.2 388 55.4
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 1.3e-105 387.9 415 54.2
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 1.1e-104 384.8 458 49.8
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 1.4e-104 384.4 388 54.9
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 1.8e-104 384.0 386 55.4
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 3.1e-104 383.3 459 48.8
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 3.1e-104 383.3 462 50.9
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 5.3e-104 382.5 455 50.1
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 2.0e-103 380.6 482 49.8
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 1.6e-100 370.9 331 57.7
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 3.0e-99 366.7 461 47.5
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 5.1e-99 365.9 376 54.0
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 6.7e-99 365.5 394 54.1
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 8.8e-99 365.2 388 52.8
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 2.6e-98 363.6 311 60.8
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 9.7e-98 361.7 345 56.2
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 8.2e-97 358.6 296 60.5
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 1.8e-96 357.5 460 48.3
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 2.4e-96 357.1 297 59.3
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 4.1e-96 356.3 484 44.6
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 9.1e-96 355.1 297 59.6
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 1.5e-95 354.4 393 52.2
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 4.5e-95 352.8 556 41.7
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 7.7e-95 352.1 381 52.2
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 1.3e-94 351.3 453 46.6
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 1.7e-94 350.9 383 50.9
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.7e-94 350.9 472 47.0
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 3.8e-94 349.7 445 47.4
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 5.0e-94 349.4 466 45.7
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 6.5e-94 349.0 303 59.4
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 6.5e-94 349.0 397 49.9
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 3.2e-93 346.7 309 58.6
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 7.2e-93 345.5 380 51.1
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 7.2e-93 345.5 471 45.4
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 2.7e-92 343.6 408 50.2
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 3.6e-92 343.2 459 44.9
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 8.0e-92 342.0 297 59.3
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 1.0e-91 341.7 376 50.5
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 1.4e-91 341.3 385 50.4
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 1.8e-91 340.9 402 50.0
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 1.1e-90 338.2 490 42.2
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 1.1e-90 338.2 411 47.7
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 1.1e-90 338.2 348 54.9
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 2.0e-90 337.4 346 52.0
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 3.3e-90 336.7 396 49.7
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 7.4e-90 335.5 383 50.1
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 9.7e-90 335.1 344 53.2
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 1.3e-89 334.7 441 45.6
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 1.3e-89 334.7 445 46.5
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 1.3e-89 334.7 394 47.2
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 1.7e-89 334.3 297 56.6
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 2.8e-89 333.6 429 46.9
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 2.4e-88 330.5 461 45.6
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 3.1e-88 330.1 461 45.6
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 1.2e-87 328.2 370 50.0
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.2e-87 328.2 453 45.3
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 3.5e-87 326.6 442 46.8
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 5.9e-87 325.9 420 47.6
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 5.5e-85 319.3 390 47.2
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 9.4e-85 318.5 347 51.9
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 1.6e-84 317.8 395 47.8
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 6.1e-84 315.8 396 46.0
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 8.0e-84 315.5 469 43.1
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 7.5e-82 308.9 266 57.9
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 1.3e-81 308.1 417 45.8
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 3.7e-81 306.6 472 40.7
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 6.3e-81 305.8 388 49.0
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 2.2e-78 297.4 344 48.8
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 2.5e-77 293.9 548 39.8
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 1.0e-75 288.5 414 42.0
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 1.5e-74 284.6 297 50.8
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 7.0e-72 275.8 298 54.0
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 1.0e-70 271.9 413 42.6
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 8.6e-70 268.9 428 40.4
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 3.4e-66 256.9 293 47.1
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 2.8e-65 253.8 370 44.6
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 2.7e-63 247.3 329 41.6
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 3.8e-62 243.4 344 45.1
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 7.3e-61 239.2 378 42.6
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 2.0e-58 231.1 332 37.7
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 4.6e-55 219.9 501 32.9
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 3.9e-54 216.9 376 40.7
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 4.1e-48 196.8 203 50.2
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 7.0e-48 196.1 282 45.0
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 2.5e-45 187.6 279 40.1
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 3.6e-44 183.7 272 43.0
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 1.7e-41 174.9 134 64.2
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 2.7e-39 167.5 383 31.1
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 7.6e-34 149.4 116 63.8
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 5.8e-26 123.2 294 31.0
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 6.6e-22 109.8 113 59.3
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.6e-20 105.1 110 58.2
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 6.9e-19 99.8 86 58.1
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 1.1e-13 82.4 75 53.3
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.1e-11 75.9 177 29.4
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.1e-11 75.9 62 53.2
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.4e-11 75.5 71 54.9
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 6.4e-09 66.6 56 42.9


User provided reference genes

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