Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 1.3e-172 609.8 335 100.0
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 1.3e-172 609.8 335 100.0
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 3.0e-161 572.0 338 93.8
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 5.1e-161 571.2 338 95.0
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 3.6e-159 565.1 338 91.4
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 4.0e-158 561.6 338 90.5
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 6.9e-158 560.8 338 89.9
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 6.9e-158 560.8 338 92.6
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 5.8e-157 557.8 345 91.3
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 3.8e-156 555.1 347 90.2
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 6.4e-156 554.3 347 90.2
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 1.2e-154 550.1 365 87.1
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 2.3e-153 545.8 331 92.7
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 1.6e-151 539.7 328 91.8
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.2e-149 533.5 335 91.3
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 7.1e-147 524.2 338 87.0
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 2.5e-144 515.8 338 84.9
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 2.1e-143 512.7 338 84.6
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 4.8e-143 511.5 338 84.9
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 1.1e-142 510.4 338 85.5
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 1.1e-142 510.4 338 84.0
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.8e-142 509.6 339 84.1
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 2.4e-142 509.2 338 80.5
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 2.4e-142 509.2 338 84.9
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 3.1e-142 508.8 513 63.5
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 5.3e-142 508.1 338 84.0
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 9.0e-142 507.3 338 85.2
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 9.0e-142 507.3 338 84.3
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 9.0e-142 507.3 338 84.3
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.2e-141 506.9 338 84.0
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 1.5e-141 506.5 338 83.7
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 2.0e-141 506.1 340 84.1
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 2.0e-141 506.1 338 84.0
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 3.4e-141 505.4 338 83.7
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 3.4e-141 505.4 338 83.7
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 4.5e-141 505.0 338 84.0
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 5.9e-141 504.6 338 83.7
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 1.7e-140 503.1 338 84.0
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 1.7e-140 503.1 339 83.5
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 2.2e-140 502.7 338 83.7
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 2.2e-140 502.7 338 82.5
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 2.2e-140 502.7 338 84.0
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 3.8e-140 501.9 338 82.8
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.8e-140 501.9 339 83.2
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 3.8e-140 501.9 338 83.4
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 2.5e-139 499.2 338 82.8
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 9.3e-139 497.3 342 82.7
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 1.2e-138 496.9 354 80.2
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.2e-138 496.9 340 82.9
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 1.2e-138 496.9 338 82.5
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 2.1e-138 496.1 339 82.6
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.7e-138 495.7 335 81.2
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 3.6e-138 495.4 338 82.0
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 3.6e-138 495.4 350 81.1
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 3.6e-138 495.4 338 83.7
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 4.6e-138 495.0 338 82.5
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 4.6e-138 495.0 338 82.5
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 1.0e-137 493.8 341 82.4
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 3.0e-137 492.3 338 81.1
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 3.9e-137 491.9 338 82.8
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 5.1e-137 491.5 338 82.8
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 5.1e-137 491.5 338 75.4
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 8.7e-137 490.7 339 82.0
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 8.7e-137 490.7 341 82.4
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 4.3e-136 488.4 363 77.7
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 5.7e-136 488.0 340 82.9
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 5.7e-136 488.0 337 81.3
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 5.7e-136 488.0 337 81.3
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 7.4e-136 487.6 338 83.1
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 9.7e-136 487.3 338 82.0
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 9.7e-136 487.3 338 80.2
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 9.7e-136 487.3 338 82.0
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 9.7e-136 487.3 338 82.5
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 1.6e-135 486.5 339 81.4
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 6.3e-135 484.6 338 82.2
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 6.3e-135 484.6 338 82.2
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 8.2e-135 484.2 338 82.0
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 8.2e-135 484.2 338 82.2
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 8.2e-135 484.2 338 82.2
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 1.4e-134 483.4 373 76.1
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 3.1e-134 482.3 341 81.8
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 4.1e-134 481.9 356 78.1
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 4.1e-134 481.9 356 78.1
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 4.5e-133 478.4 360 77.8
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 7.7e-133 477.6 338 80.5
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 1.0e-132 477.2 353 78.2
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 1.3e-132 476.9 333 82.9
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 1.7e-132 476.5 322 82.6
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 4.2e-131 471.9 338 79.0
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.2e-130 470.3 338 78.1
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 2.7e-130 469.2 322 83.2
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 3.6e-130 468.8 338 78.7
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 1.0e-129 467.2 340 80.9
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 5.1e-129 464.9 341 75.4
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 6.7e-129 464.5 338 79.9
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 1.5e-128 463.4 350 78.0
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 5.7e-128 461.5 338 77.8
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 9.7e-128 460.7 338 73.4
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 1.3e-127 460.3 322 81.7
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.8e-127 459.1 326 81.6
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.8e-127 459.1 326 81.6
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 4.1e-126 455.3 379 72.0
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.5e-125 451.8 335 77.0
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 3.2e-123 445.7 335 75.8
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.7e-122 442.6 366 71.0
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.7e-122 442.6 366 71.0
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 2.7e-122 442.6 306 84.6
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 1.1e-120 437.2 338 68.9
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 1.0e-113 414.1 353 71.1
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 2.3e-113 412.9 285 82.8
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 2.2e-108 396.4 335 73.4
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 2.1e-106 389.8 225 84.4
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.3e-100 370.5 339 68.4
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 2.3e-100 369.8 275 80.0
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 1.2e-96 357.5 318 71.4
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 5.4e-94 348.6 322 68.9
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 8.6e-92 341.3 335 63.6
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.2e-90 337.4 256 82.0
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 4.7e-90 335.5 335 63.9
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 7.5e-88 328.2 278 69.8
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 1.5e-83 313.9 383 47.5
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 2.4e-78 296.6 331 52.3
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 2.0e-77 293.5 147 93.2
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 1.2e-61 241.1 175 71.4
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 2.7e-61 240.0 327 45.9
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 6.2e-58 228.8 165 79.4
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 5.2e-57 225.7 210 70.5
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 1.7e-52 210.7 116 85.3
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.6e-42 177.6 82 96.3
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.3e-36 157.1 91 87.9
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 4.0e-33 146.4 90 86.7
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 1.3e-31 141.4 90 82.2
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 3.2e-22 110.2 55 92.7
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.5e-19 100.5 45 100.0
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 8.2e-18 95.5 203 29.1
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 3.1e-17 93.6 242 29.8
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 5.5e-14 82.8 61 63.9
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 6.1e-13 79.3 39 89.7
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.8e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.8e-12 75.5 41 90.2
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 3.7e-10 70.1 45 73.3
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.8e-10 69.7 84 76.2
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 2.4e-09 67.4 30 90.0


User provided reference genes

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