Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 6.5e-55 217.2 116 100.0
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 1.9e-54 215.7 115 99.1
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 9.1e-41 170.2 116 83.6
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 3.2e-38 161.8 117 80.3
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 3.2e-38 161.8 117 80.3
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 3.2e-38 161.8 117 80.3
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 3.2e-38 161.8 117 80.3
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 3.2e-38 161.8 117 80.3
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 3.2e-38 161.8 117 80.3
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 2.2e-34 149.1 128 71.9
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 1.4e-33 146.4 123 73.2
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 2.4e-33 145.6 127 70.9
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 3.1e-33 145.2 128 70.3
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 3.1e-33 145.2 128 70.3
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 4.1e-33 144.8 127 70.9
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 5.3e-33 144.4 128 69.5
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 7.0e-33 144.1 124 71.8
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 7.0e-33 144.1 124 71.8
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 9.1e-33 143.7 127 70.1
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 2.0e-32 142.5 127 70.1
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 1.0e-31 140.2 126 69.8
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 3.8e-31 138.3 128 68.0
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 5.2e-28 127.9 121 64.5
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 6.5e-23 110.9 127 55.1
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 1.5e-22 109.8 129 55.0
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 9.4e-22 107.1 129 53.5
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 1.6e-21 106.3 121 58.7
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 6.1e-21 104.4 121 57.0
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 8.0e-21 104.0 125 56.0
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.0e-20 103.6 129 52.7
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 1.0e-20 103.6 129 52.7
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.0e-20 103.6 129 54.3
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 4.0e-20 101.7 129 51.9
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 4.0e-20 101.7 127 54.3
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 5.2e-20 101.3 129 51.9
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 6.8e-20 100.9 129 52.7
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 6.8e-20 100.9 120 55.8
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 8.8e-20 100.5 129 51.9
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 2.0e-19 99.4 124 51.6
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 3.4e-19 98.6 127 52.8
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 4.4e-19 98.2 125 52.8
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 5.7e-19 97.8 128 53.1
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.4e-17 93.2 127 50.4
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 1.8e-17 92.8 128 50.0
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 1.8e-17 92.8 122 50.8
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 9.1e-17 90.5 120 50.8
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 9.1e-17 90.5 120 50.8
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 1.2e-16 90.1 120 52.5
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 1.7e-15 86.3 129 48.1
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 1.7e-15 86.3 128 46.9
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 2.2e-15 85.9 127 48.8
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 6.5e-15 84.3 127 49.6
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 6.5e-15 84.3 125 48.8
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 8.5e-15 84.0 121 53.7
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.1e-14 83.6 129 47.3
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 1.1e-14 83.6 123 51.2
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.5e-14 83.2 119 47.9
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 1.5e-14 83.2 129 46.5
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 1.9e-14 82.8 121 52.9
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 1.9e-14 82.8 126 45.2
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.9e-14 82.8 129 46.5
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 2.5e-14 82.4 120 47.5
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 2.5e-14 82.4 121 46.3
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 2.5e-14 82.4 126 46.0
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 3.2e-14 82.0 118 45.8
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 3.2e-14 82.0 129 45.7
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 3.2e-14 82.0 135 45.9
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 4.2e-14 81.6 129 45.0
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 4.2e-14 81.6 118 47.5
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 5.5e-14 81.3 129 46.5
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 5.5e-14 81.3 135 48.1
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 7.2e-14 80.9 125 46.4
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 9.4e-14 80.5 121 48.8
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 9.4e-14 80.5 121 43.8
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 1.2e-13 80.1 125 44.0
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 1.2e-13 80.1 120 44.2
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 1.2e-13 80.1 119 48.7
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.1e-13 79.3 129 44.2
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.1e-13 79.3 129 44.2
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 2.1e-13 79.3 119 43.7
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.1e-13 79.3 119 43.7
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.7e-13 79.0 119 42.9
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 3.6e-13 78.6 121 47.1
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 3.6e-13 78.6 121 47.1
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.6e-13 78.6 128 44.5
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 3.6e-13 78.6 122 45.9
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 3.6e-13 78.6 122 43.4
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.6e-13 78.6 119 45.4
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 3.6e-13 78.6 120 43.3
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 8.0e-13 77.4 122 45.9
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 8.0e-13 77.4 122 45.9
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 1.4e-12 76.6 120 46.7
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 1.8e-12 76.3 117 47.0
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 2.3e-12 75.9 122 46.7
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 2.3e-12 75.9 122 46.7
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 3.0e-12 75.5 120 45.8
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 3.0e-12 75.5 129 43.4
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 4.0e-12 75.1 119 44.5
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 4.0e-12 75.1 121 42.1
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 4.0e-12 75.1 126 42.9
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 5.2e-12 74.7 125 44.0
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 5.2e-12 74.7 119 47.1
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 6.8e-12 74.3 128 43.8
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 6.8e-12 74.3 122 46.7
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 8.8e-12 73.9 123 43.1
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 2.0e-11 72.8 121 42.1
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 2.6e-11 72.4 125 44.0
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 2.6e-11 72.4 119 46.2
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 4.4e-11 71.6 121 47.1
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 5.7e-11 71.2 118 41.5
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 7.5e-11 70.9 125 44.0
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 9.8e-11 70.5 120 41.7
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 9.8e-11 70.5 126 42.9
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 1.3e-10 70.1 127 40.2
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 1.3e-10 70.1 119 46.2
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 3.7e-10 68.6 129 39.5
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 1.8e-09 66.2 133 39.8
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 1.8e-09 66.2 121 43.0
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 5.4e-09 64.7 69 58.0
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 9.1e-09 63.9 115 40.0
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 1.2e-08 63.5 119 40.3
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 4.5e-08 61.6 64 59.4
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 6.6e-07 57.8 126 34.9
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 1.9e-06 56.2 127 37.0
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 2.5e-06 55.8 123 38.2
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 7.2e-06 54.3 116 37.9


User provided reference genes

Program Settings