Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 1.5e-101 372.9 183 100.0
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 2.0e-98 362.5 184 97.8
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 2.0e-87 325.9 184 89.7
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 4.2e-85 318.2 174 90.8
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 2.2e-73 279.3 175 81.1
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 5.4e-72 274.6 181 78.5
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 9.2e-72 273.9 181 78.5
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 1.6e-71 273.1 181 78.5
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 2.7e-71 272.3 181 77.9
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 3.5e-71 271.9 181 77.9
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 6.0e-71 271.2 181 77.9
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 1.0e-70 270.4 175 80.0
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 1.1e-69 266.9 181 75.7
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 2.1e-68 262.7 181 74.6
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 8.0e-68 260.8 181 74.0
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 3.1e-67 258.8 181 72.9
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 8.9e-67 257.3 181 74.6
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 1.5e-66 256.5 181 72.4
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 1.5e-66 256.5 181 72.4
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 4.4e-66 255.0 181 73.5
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 8.3e-65 250.8 181 70.7
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 1.4e-64 250.0 180 71.1
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 2.4e-64 249.2 180 71.1
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 7.0e-64 247.7 180 70.6
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 3.5e-63 245.4 179 69.8
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 6.0e-63 244.6 207 63.8
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 8.9e-59 230.7 177 67.2
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.5e-58 229.9 177 66.1
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.5e-58 229.9 177 66.1
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 1.5e-58 229.9 177 66.1
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 7.5e-58 227.6 177 65.5
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.3e-57 226.9 178 64.6
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.7e-57 226.5 178 64.6
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 3.7e-57 225.3 183 62.3
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 4.9e-57 224.9 178 63.5
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 6.4e-57 224.6 177 65.5
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 6.4e-57 224.6 177 65.0
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 8.3e-57 224.2 177 65.0
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 1.9e-56 223.0 177 63.3
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.9e-56 223.0 177 65.5
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 2.4e-56 222.6 177 64.4
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 4.1e-56 221.9 176 63.6
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 7.1e-56 221.1 177 63.8
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 9.2e-56 220.7 177 63.3
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 1.2e-55 220.3 177 64.4
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.6e-55 219.9 178 64.6
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 1.6e-55 219.9 177 63.8
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 2.7e-55 219.2 178 62.4
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 3.5e-55 218.8 177 63.3
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.5e-55 218.8 177 63.3
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 6.0e-55 218.0 178 62.9
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 7.8e-55 217.6 177 63.8
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 1.0e-54 217.2 177 62.7
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.7e-54 216.5 177 62.7
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 1.7e-54 216.5 178 62.9
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 2.3e-54 216.1 177 64.4
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 5.1e-54 214.9 178 62.9
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 6.6e-54 214.5 175 61.7
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 8.6e-54 214.2 178 62.4
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 1.1e-53 213.8 177 63.3
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 1.5e-53 213.4 177 63.3
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 1.5e-53 213.4 178 62.9
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 1.5e-53 213.4 178 62.4
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.9e-53 213.0 179 62.0
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 1.9e-53 213.0 177 63.8
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 2.5e-53 212.6 178 61.2
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 3.3e-53 212.2 178 61.2
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 3.3e-53 212.2 178 61.2
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 4.3e-53 211.8 177 62.1
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.6e-52 209.9 177 62.7
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 1.6e-52 209.9 178 60.7
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 1.6e-52 209.9 176 61.9
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.1e-52 209.5 187 59.9
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 2.8e-52 209.1 174 63.2
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 4.7e-52 208.4 175 62.9
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 6.2e-52 208.0 178 60.7
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 6.2e-52 208.0 177 60.5
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 6.2e-52 208.0 177 60.5
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 6.2e-52 208.0 178 60.7
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 1.4e-51 206.8 188 62.2
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.4e-51 206.8 190 58.4
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 1.4e-51 206.8 175 62.9
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 1.4e-51 206.8 177 61.0
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 1.4e-51 206.8 178 61.8
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.8e-51 206.5 174 61.5
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 1.8e-51 206.5 177 59.3
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 2.4e-51 206.1 179 63.1
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 2.4e-51 206.1 179 63.1
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 2.4e-51 206.1 175 62.3
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 2.4e-51 206.1 174 63.2
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 2.4e-51 206.1 175 58.9
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 3.1e-51 205.7 178 59.6
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 4.0e-51 205.3 180 60.0
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 6.8e-51 204.5 174 60.9
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 8.9e-51 204.1 177 59.9
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 1.2e-50 203.8 177 60.5
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 1.2e-50 203.8 178 59.6
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.5e-50 203.4 190 55.3
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 1.5e-50 203.4 178 59.6
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 2.0e-50 203.0 178 59.0
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 2.0e-50 203.0 176 60.2
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 9.9e-50 200.7 178 59.6
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 9.9e-50 200.7 172 61.0
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 1.3e-49 200.3 174 60.3
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 1.7e-49 199.9 179 58.7
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 3.8e-49 198.7 176 58.5
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 4.9e-49 198.4 181 60.2
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 4.9e-49 198.4 174 58.0
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 6.4e-49 198.0 180 57.2
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 1.1e-48 197.2 178 56.7
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 1.9e-48 196.4 183 59.6
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 2.4e-48 196.1 179 58.7
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 3.2e-48 195.7 178 56.7
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 6.0e-47 191.4 180 57.8
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 7.8e-47 191.0 180 57.2
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 6.6e-46 188.0 162 59.9
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 3.3e-45 185.7 175 57.1
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 9.0e-43 177.6 116 69.8
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 9.0e-43 177.6 158 58.9
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 1.5e-42 176.8 176 54.0
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 3.4e-42 175.6 184 54.3
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 1.7e-41 173.3 175 51.4
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 4.9e-41 171.8 176 52.8
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 1.4e-40 170.2 122 67.2
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 1.4e-40 170.2 119 67.2
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 3.2e-40 169.1 177 53.7
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 5.4e-40 168.3 181 49.2
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 5.4e-40 168.3 107 72.0
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 3.9e-38 162.2 175 50.9
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 4.3e-37 158.7 177 52.5
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 6.2e-36 154.8 175 54.3
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 1.2e-34 150.6 133 60.2
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 3.4e-34 149.1 176 49.4
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 9.3e-32 141.0 181 45.9
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 9.3e-32 141.0 136 55.9
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 2.7e-31 139.4 175 45.1
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.8e-30 136.7 215 43.3
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 1.9e-29 133.3 134 56.7
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 9.6e-29 131.0 134 56.0
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 1.6e-28 130.2 131 53.4
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 4.8e-28 128.6 86 69.8
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 4.0e-27 125.6 172 45.9
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 7.1e-24 114.8 65 75.4
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 1.2e-23 114.0 122 51.6
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.1e-21 107.5 258 32.9
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 2.4e-19 99.8 96 52.1
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 3.1e-19 99.4 111 52.3
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 3.4e-18 95.9 119 44.5
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 3.4e-18 95.9 182 35.7
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 1.4e-16 90.5 169 40.2
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 1.4e-16 90.5 195 35.4
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 5.5e-16 88.6 178 36.0
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 3.0e-14 82.8 97 43.3
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 2.0e-10 70.1 93 47.3
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 5.9e-10 68.6 63 54.0
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 1.9e-08 63.5 57 50.9
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 9.4e-08 61.2 239 25.5
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 6.7e-06 55.1 110 29.1
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 8.8e-06 54.7 40 72.5


User provided reference genes

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