Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 2.3e-102 375.6 184 100.0
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 2.6e-98 362.1 184 97.8
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 2.3e-91 339.0 184 91.8
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 1.2e-82 310.1 175 89.1
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 1.7e-73 279.6 175 81.7
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 6.0e-71 271.2 176 79.5
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 1.3e-70 270.0 182 78.0
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 2.3e-70 269.2 182 78.0
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 3.9e-70 268.5 182 78.0
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 6.6e-70 267.7 182 77.5
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 8.6e-70 267.3 182 77.5
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 1.5e-69 266.5 182 77.5
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 2.8e-68 262.3 182 75.3
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 2.0e-66 256.1 182 73.6
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 2.0e-66 256.1 182 73.6
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 1.7e-65 253.1 182 74.2
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 2.9e-65 252.3 182 72.0
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 3.8e-65 251.9 182 72.0
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 3.8e-65 251.9 182 72.0
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 8.4e-65 250.8 182 73.1
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 1.6e-63 246.5 182 70.3
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 3.5e-63 245.4 181 70.7
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 6.0e-63 244.6 181 70.7
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 1.7e-62 243.0 181 70.2
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 8.7e-62 240.7 180 69.4
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 5.6e-61 238.0 208 63.0
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 2.2e-57 226.1 178 66.9
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.4e-56 223.4 178 65.2
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.4e-56 223.4 178 65.2
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 1.4e-56 223.4 178 65.2
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 1.9e-56 223.0 178 65.2
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 9.3e-56 220.7 184 62.0
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.2e-55 220.3 179 63.7
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 1.2e-55 220.3 178 63.5
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.6e-55 219.9 179 63.7
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.6e-55 219.9 179 63.1
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 1.6e-55 219.9 178 65.2
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 1.6e-55 219.9 178 64.6
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 2.1e-55 219.5 178 64.6
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 4.6e-55 218.4 178 64.0
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.7e-54 216.5 178 64.6
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 2.3e-54 216.1 178 63.5
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 3.0e-54 215.7 178 62.9
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 5.1e-54 214.9 178 64.0
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 6.6e-54 214.5 178 63.5
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 1.1e-53 213.8 178 63.5
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 1.1e-53 213.8 177 62.1
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 1.1e-53 213.8 178 62.9
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.1e-53 213.8 178 62.9
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.5e-53 213.4 179 63.7
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 1.9e-53 213.0 178 64.0
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 2.5e-53 212.6 179 61.5
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 3.3e-53 212.2 179 62.0
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 3.3e-53 212.2 179 62.0
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 5.6e-53 211.5 178 62.4
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 5.6e-53 211.5 180 61.1
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 5.6e-53 211.5 179 62.0
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 7.3e-53 211.1 178 62.4
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 9.6e-53 210.7 179 62.0
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 9.6e-53 210.7 178 61.8
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 9.6e-53 210.7 179 60.9
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 1.3e-52 210.3 179 60.9
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 1.3e-52 210.3 179 60.9
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 2.1e-52 209.5 178 62.4
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 3.6e-52 208.8 178 62.4
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 4.8e-52 208.4 179 62.0
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 6.2e-52 208.0 176 60.8
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 6.2e-52 208.0 178 62.9
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 6.2e-52 208.0 179 62.0
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 1.1e-51 207.2 175 62.9
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 1.1e-51 207.2 176 62.5
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 1.4e-51 206.8 176 63.1
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 1.4e-51 206.8 179 61.5
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 1.8e-51 206.5 178 61.8
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 3.1e-51 205.7 188 61.2
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 6.9e-51 204.5 188 59.6
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 6.9e-51 204.5 176 61.9
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 6.9e-51 204.5 177 61.6
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 1.2e-50 203.8 175 62.3
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 1.2e-50 203.8 191 58.1
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 1.5e-50 203.4 179 59.8
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.5e-50 203.4 179 60.3
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 2.6e-50 202.6 179 59.8
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 2.6e-50 202.6 180 62.2
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 2.6e-50 202.6 180 62.2
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 2.6e-50 202.6 179 60.3
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 2.6e-50 202.6 175 60.0
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 2.6e-50 202.6 178 60.7
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.6e-50 202.6 178 60.1
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 3.4e-50 202.2 179 58.1
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 4.5e-50 201.8 191 58.1
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 4.5e-50 201.8 179 58.7
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 5.8e-50 201.4 178 59.0
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 9.9e-50 200.7 176 58.5
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 1.3e-49 200.3 179 59.2
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 2.2e-49 199.5 175 60.6
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 2.9e-49 199.1 179 59.8
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 3.8e-49 198.7 181 59.1
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 3.8e-49 198.7 181 59.7
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 4.9e-49 198.4 178 59.6
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 4.9e-49 198.4 178 60.7
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 6.4e-49 198.0 191 55.0
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 8.4e-49 197.6 179 58.7
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 4.2e-48 195.3 173 60.1
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 5.4e-48 194.9 175 59.4
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 7.1e-48 194.5 179 57.5
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 1.2e-47 193.7 179 57.0
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 1.6e-47 193.4 177 57.6
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 1.6e-47 193.4 175 57.7
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 2.7e-47 192.6 180 56.7
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 2.7e-47 192.6 181 56.9
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 2.7e-47 192.6 179 56.4
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 7.9e-47 191.0 179 56.4
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 1.8e-46 189.9 184 58.7
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 2.5e-45 186.0 162 59.3
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 5.6e-45 184.9 181 55.2
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 8.1e-44 181.0 176 56.8
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 9.0e-43 177.6 116 69.8
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 1.2e-42 177.2 158 58.9
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 2.6e-42 176.0 176 53.4
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 7.6e-42 174.5 177 53.1
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 1.4e-40 170.2 122 67.2
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 1.4e-40 170.2 119 67.2
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 3.2e-40 169.1 185 53.5
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 3.2e-40 169.1 177 52.5
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 5.5e-40 168.3 107 72.0
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.2e-39 167.2 181 49.2
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 6.0e-39 164.9 178 53.4
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 3.0e-38 162.5 175 55.4
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 1.5e-37 160.2 178 52.2
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 4.3e-37 158.7 176 50.6
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 1.7e-33 146.7 178 49.4
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 2.9e-33 146.0 134 59.7
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 6.1e-31 138.3 181 45.3
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 2.3e-30 136.3 137 55.5
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 2.3e-30 136.3 212 42.0
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 6.7e-30 134.8 176 44.3
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 3.7e-28 129.0 86 69.8
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 4.8e-28 128.6 135 54.8
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 8.2e-28 127.9 135 56.3
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 1.5e-26 123.6 132 52.3
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 7.2e-24 114.8 65 75.4
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 1.0e-22 110.9 68 73.5
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 3.0e-22 109.4 123 51.2
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.7e-20 103.6 260 32.7
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 2.4e-19 99.8 96 52.1
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 2.4e-19 99.8 120 50.0
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 6.9e-19 98.2 182 35.2
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 3.4e-18 95.9 119 44.5
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 7.7e-18 94.7 195 35.9
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 2.1e-15 86.7 170 40.0
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 2.7e-15 86.3 178 35.4
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 3.0e-14 82.8 97 43.3
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 5.9e-10 68.6 63 54.0
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 1.3e-09 67.4 94 47.9
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 1.9e-08 63.5 57 50.9
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 4.7e-07 58.9 240 25.0
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 6.7e-06 55.1 110 29.1


User provided reference genes

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