Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p37720 Brassica napus HOM05D029378 ORTHO05D014969 3.9e-128 461.5 227 100.0
BolC4t25349H Brassica oleracea HOM05D001696 ORTHO05D014969 5.2e-101 371.3 248 79.0
BcaC02g09044 Brassica carinata HOM05D029378 ORTHO05D014969 5.2e-24 115.5 58 93.1
C05p14900 Brassica napus HOM05D001696 ORTHO05D001746 4.7e-17 92.4 58 74.1
BolC5t30205H Brassica oleracea HOM05D001696 ORTHO05D001746 4.7e-17 92.4 59 71.2
BcaC05g25525 Brassica carinata HOM05D001696 ORTHO05D001746 8.0e-17 91.7 58 72.4
A06p12610 Brassica napus HOM05D001696 ORTHO05D001746 2.2e-14 83.6 60 68.3
BraA06t24422Z Brassica rapa HOM05D001696 ORTHO05D001746 2.2e-14 83.6 60 68.3
CARHR017090 Cardamine hirsuta HOM05D001696 ORTHO05D001746 8.3e-14 81.6 57 71.9
Thhalv10006845m.g Eutrema salsugineum HOM05D001696 ORTHO05D001746 9.2e-13 78.2 57 68.4
Thhalv10018148m.g Eutrema salsugineum HOM05D001696 ORTHO05D001746 2.7e-12 76.6 58 67.2
Sp1g14760 Schrenkiella parvula HOM05D001696 ORTHO05D001746 2.7e-12 76.6 57 70.2
Sp5g34140 Schrenkiella parvula HOM05D001696 ORTHO05D001746 3.5e-12 76.3 61 65.6
BcaC08g45383 Brassica carinata HOM05D001696 ORTHO05D001746 4.6e-12 75.9 59 62.7
C06p30150 Brassica napus HOM05D001696 ORTHO05D001746 4.6e-12 75.9 59 62.7
BolC6t38177H Brassica oleracea HOM05D001696 ORTHO05D001746 4.6e-12 75.9 59 62.7
AL1G28780 Arabidopsis lyrata HOM05D001696 ORTHO05D001746 1.3e-11 74.3 57 64.9
A07p27320 Brassica napus HOM05D001696 ORTHO05D001746 3.9e-11 72.8 58 65.5
Gohir.D12G142500 Gossypium hirsutum HOM05D001696 ORTHO05D014969 3.9e-11 72.8 66 59.1
AT1G79090 Arabidopsis thaliana HOM05D001696 ORTHO05D001746 5.0e-11 72.4 58 63.8
Carub.0002s2596 Capsella rubella HOM05D001696 ORTHO05D001746 5.0e-11 72.4 58 63.8
Hund12465 Selenicereus undatus HOM05D001696 ORTHO05D001746 8.6e-11 71.6 47 72.3
A07p44230 Brassica napus HOM05D001696 ORTHO05D001746 1.1e-10 71.2 50 70.0
BraA07t31931Z Brassica rapa HOM05D001696 ORTHO05D001746 1.1e-10 71.2 50 70.0
Gohir.D02G136950 Gossypium hirsutum HOM05D003953 ORTHO05D004618 3.3e-10 69.7 66 54.5
Gorai.013G178200 Gossypium raimondii HOM05D001696 ORTHO05D001746 3.3e-10 69.7 59 59.3
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 3.3e-10 69.7 79 45.6
Aa31LG4G1910 Aethionema arabicum HOM05D001696 ORTHO05D001746 9.5e-10 68.2 47 68.1
AL2G39550 Arabidopsis lyrata HOM05D001696 ORTHO05D001746 9.5e-10 68.2 46 71.7
BolC6t40314H Brassica oleracea HOM05D001696 ORTHO05D001746 1.6e-09 67.4 59 62.7
Gohir.A13G153033 Gossypium hirsutum HOM05D001696 ORTHO05D001746 1.6e-09 67.4 59 57.6
Eucgr.F03181 Eucalyptus grandis HOM05D001696 ORTHO05D001746 2.1e-09 67.0 49 67.3
BcaC08g47473 Brassica carinata HOM05D001696 ORTHO05D001746 6.2e-09 65.5 59 61.0
C06p52960 Brassica napus HOM05D001696 ORTHO05D001746 6.2e-09 65.5 59 61.0
AUR62022387 Chenopodium quinoa HOM05D001696 ORTHO05D001746 8.0e-09 65.1 55 61.8
Dinv11446 Davidia involucrata HOM05D002010 ORTHO05D001602 8.0e-09 65.1 59 55.9
Sc20g0002980 Simmondsia chinensis HOM05D001696 ORTHO05D001746 1.0e-08 64.7 49 63.3
Gorai.007G247200 Gossypium raimondii HOM05D001696 ORTHO05D014969 1.4e-08 64.3 66 57.6
vmacro11659 Vaccinium macrocarpon HOM05D001696 ORTHO05D001746 1.4e-08 64.3 66 51.5
CARHR072760 Cardamine hirsuta HOM05D001696 ORTHO05D001746 2.3e-08 63.5 60 53.3
Oeu003833.1 Olea europaea HOM05D001696 ORTHO05D001746 2.3e-08 63.5 53 62.3
QL04p073937 Quercus lobata HOM05D001696 ORTHO05D001746 2.3e-08 63.5 73 49.3
Atru.chr12.2178 Acer truncatum HOM05D001696 ORTHO05D001746 4.0e-08 62.8 59 61.0
Actinidia04133 Actinidia chinensis HOM05D001696 ORTHO05D001746 4.0e-08 62.8 50 62.0
Lsat_1_v5_gn_7_112280 Lactuca sativa HOM05D001696 ORTHO05D001746 4.0e-08 62.8 57 54.4
SGA_v2.0_scaffold92G28145 Striga asiatica HOM05D001696 ORTHO05D001746 4.0e-08 62.8 61 57.4
Thecc.07G153500 Theobroma cacao HOM05D001696 ORTHO05D001746 4.0e-08 62.8 49 61.2
CSS0017391 Camellia sinensis var. sinensis HOM05D001696 ORTHO05D001746 5.2e-08 62.4 47 66.0
Cc05_g16020 Coffea canephora HOM05D001696 ORTHO05D001746 5.2e-08 62.4 49 59.2
Actinidia37111 Actinidia chinensis HOM05D001696 ORTHO05D001746 6.8e-08 62.0 57 61.4
CSS0031562 Camellia sinensis var. sinensis HOM05D001696 ORTHO05D001746 6.8e-08 62.0 57 54.4
CSS0050378 Camellia sinensis var. sinensis HOM05D001696 ORTHO05D001746 6.8e-08 62.0 57 54.4
Rhsim06G0238500 Rhododendron simsii HOM05D001696 ORTHO05D001746 8.9e-08 61.6 47 63.8
Oeu052010.1 Olea europaea HOM05D001696 ORTHO05D001746 1.2e-07 61.2 49 61.2
Sabra11G0128200 Salix brachista HOM05D001696 ORTHO05D001746 1.2e-07 61.2 47 63.8
BcaB02g07196 Brassica carinata HOM05D001696 ORTHO05D001746 1.5e-07 60.8 50 64.0
Ciclev10018922m.g Citrus clementina HOM05D001696 ORTHO05D001746 1.5e-07 60.8 47 66.0
BcaC02g08728 Brassica carinata HOM05D029378 ORTHO05D014969 2.0e-07 60.5 42 73.8
Nitab4.5_0000134g0040 Nicotiana tabacum HOM05D001696 ORTHO05D001746 2.0e-07 60.5 55 56.4
MELO3C010566.2 Cucumis melo HOM05D001696 ORTHO05D001746 3.4e-07 59.7 46 67.4
Gohir.A01G038600 Gossypium hirsutum HOM05D001696 ORTHO05D001746 3.4e-07 59.7 60 53.3
CANSAT80G0895 Cannabis sativa HOM05D001696 ORTHO05D001746 4.4e-07 59.3 55 60.0
ClCG11G016390 Citrullus lanatus HOM05D001696 ORTHO05D001746 4.4e-07 59.3 46 67.4
SGA_v2.0_scaffold49G18170 Striga asiatica HOM05D001696 ORTHO05D001746 4.4e-07 59.3 49 61.2
MSTRG.13061 Avicennia marina HOM05D001696 ORTHO05D001746 7.5e-07 58.5 49 57.1
TAR626G0259 Trochodendron aralioides HOM05D001696 ORTHO05D001746 7.5e-07 58.5 53 58.5
TAR627G0005 Trochodendron aralioides HOM05D001696 ORTHO05D001746 7.5e-07 58.5 51 56.9
Actinidia07347 Actinidia chinensis HOM05D001696 ORTHO05D001746 9.8e-07 58.2 57 50.9
BcaB01g00189 Brassica carinata HOM05D004414 ORTHO05D001824 9.8e-07 58.2 39 66.7
BcaC07g39819 Brassica carinata HOM05D004414 ORTHO05D001824 9.8e-07 58.2 39 66.7
Gohir.D08G253100 Gossypium hirsutum HOM05D001696 ORTHO05D001746 9.8e-07 58.2 60 56.7
Gorai.004G270000 Gossypium raimondii HOM05D001696 ORTHO05D001746 9.8e-07 58.2 60 56.7
Haze_08557 Corylus avellana HOM05D001696 ORTHO05D001746 1.3e-06 57.8 59 54.2
Gohir.A08G232900 Gossypium hirsutum HOM05D001696 ORTHO05D001746 1.3e-06 57.8 59 57.6
Gohir.D01G026500 Gossypium hirsutum HOM05D001696 ORTHO05D001746 1.3e-06 57.8 60 53.3
PGR031G3154 Punica granatum HOM05D001696 ORTHO05D001746 1.3e-06 57.8 49 59.2
SalBow8G3399 Salvia bowleyana HOM05D001696 ORTHO05D001746 1.3e-06 57.8 49 59.2
Sp5g07920 Schrenkiella parvula HOM05D004414 ORTHO05D001824 1.3e-06 57.8 88 38.6
Actinidia17323 Actinidia chinensis HOM05D001696 ORTHO05D001746 1.7e-06 57.4 49 55.1
Cfa019420 Carpinus fangiana HOM05D001696 ORTHO05D001746 1.7e-06 57.4 47 63.8
CiPaw.12G006400 Carya illinoinensis HOM05D001696 ORTHO05D001746 1.7e-06 57.4 47 61.7
GSVIVG01020437001 Vitis vinifera HOM05D001696 ORTHO05D001746 1.7e-06 57.4 47 66.0
BolC6t37405H Brassica oleracea HOM05D004414 ORTHO05D001824 2.2e-06 57.0 76 43.4
Oeu056981.1 Olea europaea HOM05D001696 ORTHO05D001746 2.2e-06 57.0 53 54.7
Peaxi162Scf00006g00148 Petunia axillaris HOM05D001696 ORTHO05D001746 2.2e-06 57.0 48 62.5
Hund06723 Selenicereus undatus HOM05D001696 ORTHO05D001746 2.2e-06 57.0 50 58.0
vmacro06022 Vaccinium macrocarpon HOM05D001696 ORTHO05D001746 2.2e-06 57.0 49 53.1
vmacro09785 Vaccinium macrocarpon HOM05D001696 ORTHO05D001746 2.2e-06 57.0 85 41.2
BcaB02g07735 Brassica carinata HOM05D004414 ORTHO05D001824 2.9e-06 56.6 83 41.0
A07p22140 Brassica napus HOM05D004414 ORTHO05D001824 2.9e-06 56.6 76 43.4
BraA07t29897Z Brassica rapa HOM05D004414 ORTHO05D001824 2.9e-06 56.6 76 43.4
Nitab4.5_0001791g0010 Nicotiana tabacum HOM05D001696 ORTHO05D001746 2.9e-06 56.6 53 56.6
DCAR_023037 Daucus carota HOM05D001696 ORTHO05D001746 3.7e-06 56.2 64 46.9
Migut.H01696 Erythranthe guttata HOM05D001696 ORTHO05D001746 3.7e-06 56.2 49 55.1
Gorai.002G035800 Gossypium raimondii HOM05D001696 ORTHO05D014969 3.7e-06 56.2 66 50.0
Eucgr.K01336 Eucalyptus grandis HOM05D001696 ORTHO05D001746 4.9e-06 55.8 60 53.3
Hma1.2p1_0637F.1_g193570 Hydrangea macrophylla HOM05D001696 ORTHO05D001746 4.9e-06 55.8 47 66.0
Solyc12g017260.2 Solanum lycopersicum HOM05D001696 ORTHO05D001746 4.9e-06 55.8 46 65.2
EL10Ac1g00207 Beta vulgaris HOM05D001696 ORTHO05D001746 6.4e-06 55.5 42 61.9
CsaV3_4G031830 Cucumis sativus L. HOM05D001696 ORTHO05D001746 8.3e-06 55.1 45 60.0
TAR624G1076 Trochodendron aralioides HOM05D001696 ORTHO05D001746 8.3e-06 55.1 60 55.0


User provided reference genes

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